Wall clock time and date at job start Tue Mar 31 2020 13:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47036 * 2 1 4 4 P 1.61004 * 122.99671 * 180.02562 * 3 2 1 5 5 O 1.47991 * 109.47130 * 305.00061 * 4 3 2 6 6 C 1.82308 * 109.46661 * 185.00209 * 4 3 2 7 7 C 1.52996 * 109.46870 * 65.00506 * 6 4 3 8 8 O 1.42905 * 109.47093 * 179.97438 * 7 6 4 9 9 C 1.42896 * 114.00172 * 179.97438 * 8 7 6 10 10 H 1.08994 * 110.64626 * 333.14208 * 9 8 7 11 11 C 1.55159 * 110.71921 * 209.99762 * 9 8 7 12 12 C 1.54909 * 101.58258 * 206.13645 * 11 9 8 13 13 N 1.47424 * 104.82994 * 37.01247 * 12 11 9 14 14 C 1.36945 * 125.64982 * 155.83442 * 13 12 11 15 15 H 1.07996 * 120.00086 * 180.02562 * 14 13 12 16 16 C 1.38811 * 119.99684 * 0.02562 * 14 13 12 17 17 N 1.31614 * 120.00319 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99844 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47339 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47055 * 120.00170 * 18 16 14 21 21 H 1.48500 * 109.47706 * 239.99853 * 18 16 14 22 22 C 1.47016 * 108.70582 * 335.87160 * 13 12 11 23 23 O 1.60999 * 109.47171 * 65.00493 * 4 3 2 24 24 C 1.42901 * 122.99677 * 294.99794 * 23 4 3 25 25 C 1.52994 * 109.46817 * 179.97438 * 24 23 4 26 26 H 1.09001 * 109.47002 * 299.99477 * 1 2 3 27 27 H 1.08993 * 109.46955 * 59.99914 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46801 * 120.00369 * 2 1 3 30 30 H 1.09001 * 109.46998 * 239.99965 * 2 1 3 31 31 H 1.09007 * 109.46773 * 185.00062 * 6 4 3 32 32 H 1.08994 * 109.47358 * 305.00221 * 6 4 3 33 33 H 1.09005 * 109.47007 * 299.98844 * 7 6 4 34 34 H 1.08998 * 109.47797 * 59.99930 * 7 6 4 35 35 H 1.09000 * 111.00728 * 324.21276 * 11 9 8 36 36 H 1.08998 * 111.00388 * 88.06553 * 11 9 8 37 37 H 1.08999 * 110.37199 * 155.84844 * 12 11 9 38 38 H 1.08997 * 110.37240 * 278.17587 * 12 11 9 39 39 H 0.97003 * 120.00616 * 179.97438 * 17 16 14 40 40 H 1.09003 * 109.88302 * 241.64358 * 22 13 12 41 41 H 1.08997 * 109.88406 * 120.47735 * 22 13 12 42 42 H 1.08992 * 109.47147 * 299.99734 * 24 23 4 43 43 H 1.08995 * 109.47075 * 59.99922 * 24 23 4 44 44 H 1.09000 * 109.47463 * 179.97438 * 25 24 23 45 45 H 1.09003 * 109.47578 * 299.99882 * 25 24 23 46 46 H 1.09008 * 109.47510 * 59.99860 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 15 3.5717 1.7238 -0.0006 5 8 4.2390 1.0609 1.1419 6 6 3.7620 3.5307 0.1495 7 6 3.2364 3.9874 1.5118 8 8 3.3861 5.4037 1.6297 9 6 2.9224 5.9357 2.8722 10 1 2.1428 5.3020 3.2946 11 6 2.4099 7.3889 2.6901 12 6 2.6181 7.9724 4.1099 13 7 3.8742 7.3657 4.5867 14 6 4.7015 7.8911 5.5433 15 1 5.6034 7.3675 5.8239 16 6 4.3808 9.0966 6.1521 17 7 3.2814 9.7344 5.8106 18 14 5.5089 9.8129 7.4574 19 1 6.6698 8.9090 7.6586 20 1 5.9911 11.1466 7.0171 21 1 4.7630 9.9529 8.7338 22 6 4.0922 6.1038 3.8647 23 8 4.2430 1.2260 -1.3767 24 6 4.3502 -0.1530 -1.7360 25 6 5.0347 -0.2730 -3.0990 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 4.8161 3.7937 0.0599 32 1 3.1963 4.0226 -0.6418 33 1 2.1823 3.7245 1.6013 34 1 3.8021 3.4956 2.3031 35 1 3.0100 7.9256 1.9553 36 1 1.3555 7.3996 2.4140 37 1 2.7142 9.0571 4.0640 38 1 1.7901 7.6913 4.7607 39 1 3.0570 10.5767 6.2363 40 1 4.1039 5.2713 4.5683 41 1 5.0362 6.1458 3.3214 42 1 4.9398 -0.6792 -0.9854 43 1 3.3545 -0.5929 -1.7898 44 1 5.1170 -1.3248 -3.3730 45 1 4.4447 0.2531 -3.8495 46 1 6.0305 0.1671 -3.0457 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224726180.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:46 Heat of formation + Delta-G solvation = -231.589039 kcal Electronic energy + Delta-G solvation = -25213.631206 eV Core-core repulsion = 21409.065814 eV Total energy + Delta-G solvation = -3804.565392 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.158 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.10991 -38.76794 -37.95242 -37.81197 -34.50255 -34.18462 -32.48352 -32.03980 -31.84970 -30.99434 -28.88587 -26.47379 -24.72925 -24.02769 -23.70808 -22.17638 -21.97781 -20.22410 -19.07331 -18.71582 -18.26391 -17.15291 -16.98342 -16.83661 -16.29410 -16.26385 -16.19117 -15.86726 -15.25449 -15.18953 -14.98243 -14.46057 -14.18876 -13.78117 -13.65402 -13.54591 -13.41959 -13.32260 -13.10295 -13.04159 -12.97282 -12.89721 -12.70030 -12.50835 -12.46084 -12.20352 -12.15011 -12.01956 -11.87240 -11.56003 -11.48554 -11.46491 -11.25172 -11.15220 -10.83645 -10.73397 -9.00369 -7.85182 -5.31414 0.08076 1.43426 1.45306 1.56187 2.29712 2.45497 2.66851 3.25136 3.38340 3.46869 3.58749 3.70433 3.77250 3.89593 3.95595 4.02313 4.02993 4.12394 4.18482 4.22744 4.33317 4.38025 4.46575 4.52649 4.56414 4.56627 4.65787 4.84920 4.85466 4.90282 4.95203 5.04288 5.08227 5.14193 5.37262 5.38202 5.42745 5.49741 5.67874 6.02975 6.21224 6.23881 6.46193 7.02067 7.66578 8.30775 9.17580 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.024070 B = 0.002346 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.017228 B =11934.845669 C =12410.414982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.081 3.919 3 O -0.755 6.755 4 P 2.442 2.558 5 O -1.066 7.066 6 C -0.732 4.732 7 C 0.062 3.938 8 O -0.389 6.389 9 C 0.084 3.916 10 H 0.090 0.910 11 C -0.126 4.126 12 C 0.155 3.845 13 N -0.625 5.625 14 C -0.247 4.247 15 H 0.079 0.921 16 C -0.066 4.066 17 N -0.949 5.949 18 Si 0.988 3.012 19 H -0.269 1.269 20 H -0.288 1.288 21 H -0.286 1.286 22 C 0.112 3.888 23 O -0.755 6.755 24 C 0.080 3.920 25 C -0.161 4.161 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.002 0.998 39 H 0.251 0.749 40 H 0.029 0.971 41 H 0.021 0.979 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.102 0.898 45 H 0.067 0.933 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.709 -26.129 -20.788 33.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.009 3.991 3 O -0.778 6.778 4 P 2.647 2.353 5 O -1.163 7.163 6 C -0.758 4.758 7 C -0.014 4.014 8 O -0.309 6.309 9 C 0.026 3.974 10 H 0.108 0.892 11 C -0.165 4.165 12 C 0.031 3.969 13 N -0.352 5.352 14 C -0.375 4.375 15 H 0.096 0.904 16 C -0.258 4.258 17 N -0.598 5.598 18 Si 0.816 3.184 19 H -0.193 1.193 20 H -0.214 1.214 21 H -0.213 1.213 22 C -0.014 4.014 23 O -0.779 6.779 24 C 0.008 3.992 25 C -0.218 4.218 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.120 0.880 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.131 0.869 32 H 0.135 0.865 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.115 0.885 37 H 0.099 0.901 38 H 0.020 0.980 39 H 0.061 0.939 40 H 0.047 0.953 41 H 0.039 0.961 42 H 0.098 0.902 43 H 0.107 0.893 44 H 0.121 0.879 45 H 0.087 0.913 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.601 -24.835 -20.899 32.938 hybrid contribution 0.621 1.496 0.919 1.862 sum -4.981 -23.340 -19.980 31.125 Atomic orbital electron populations 1.21973 0.92315 1.04152 1.03395 1.22906 0.97917 0.75114 1.03114 1.88036 1.54874 1.39615 1.95303 0.87964 0.47751 0.49539 0.50085 1.95106 1.80086 1.80049 1.61038 1.31529 1.09688 1.31160 1.03374 1.22259 1.00951 0.82756 0.95438 1.87920 1.84875 1.21454 1.36626 1.23137 0.94850 0.95851 0.83585 0.89241 1.23020 1.01458 0.93524 0.98464 1.21770 0.86108 0.99845 0.89227 1.44707 1.24518 1.21398 1.44567 1.19506 1.02366 1.03224 1.12424 0.90359 1.25724 0.99571 0.97893 1.02641 1.70018 1.26275 1.17532 1.45974 0.84873 0.77848 0.77827 0.77898 1.19305 1.21438 1.21297 1.21833 0.97051 0.88986 0.93572 1.88015 1.86991 1.37259 1.65641 1.22926 1.02685 0.73798 0.99746 1.21977 1.01225 1.04058 0.94550 0.92315 0.91355 0.88043 0.90261 0.89300 0.86854 0.86459 0.90449 0.91982 0.92003 0.88546 0.90066 0.98044 0.93947 0.95271 0.96112 0.90232 0.89302 0.87949 0.91345 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 10.28 71.98 0.74 -0.54 16 2 C 0.08 0.82 6.99 71.98 0.50 1.33 16 3 O -0.75 -12.34 10.19 -18.20 -0.19 -12.53 16 4 P 2.44 50.37 5.36 -40.88 -0.22 50.15 16 5 O -1.07 -31.20 18.54 -11.83 -0.22 -31.42 16 6 C -0.73 -19.38 6.71 71.98 0.48 -18.90 16 7 C 0.06 2.00 5.77 71.98 0.41 2.41 16 8 O -0.39 -15.23 10.07 -148.98 -1.50 -16.73 16 9 C 0.08 3.43 3.45 31.79 0.11 3.53 16 10 H 0.09 3.25 7.82 -2.39 -0.02 3.23 16 11 C -0.13 -5.34 6.81 31.99 0.22 -5.13 16 12 C 0.16 8.20 5.89 86.86 0.51 8.72 16 13 N -0.62 -35.44 3.39 -692.00 -2.35 -37.79 16 14 C -0.25 -14.85 10.27 84.03 0.86 -13.98 16 15 H 0.08 4.57 7.83 -2.91 -0.02 4.54 16 16 C -0.07 -3.90 5.49 84.86 0.47 -3.43 16 17 N -0.95 -58.26 10.09 21.65 0.22 -58.04 16 18 Si 0.99 47.41 29.55 68.60 2.03 49.44 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 21 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 22 C 0.11 5.41 7.02 86.73 0.61 6.02 16 23 O -0.76 -12.07 10.19 -18.20 -0.19 -12.25 16 24 C 0.08 0.78 6.99 71.98 0.50 1.28 16 25 C -0.16 -1.13 10.28 71.98 0.74 -0.39 16 26 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.09 0.29 5.60 -2.39 -0.01 0.28 16 31 H 0.11 3.19 8.14 -2.38 -0.02 3.17 16 32 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.08 2.09 8.11 -2.38 -0.02 2.07 16 34 H 0.06 2.07 8.14 -2.39 -0.02 2.06 16 35 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 36 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 37 H 0.08 4.79 5.87 -2.39 -0.01 4.78 16 38 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 39 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 40 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.02 1.05 8.06 -2.39 -0.02 1.03 16 42 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.09 0.27 5.60 -2.39 -0.01 0.26 16 44 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 45 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 Total: -1.00 -80.63 383.99 4.69 -75.95 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.94 Total: 12.30 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: 6.16 Total: -19.07 kcal Atomic # 7 Polarization: -93.70 SS G_CDS: -2.13 Total: -95.83 kcal Atomic # 8 Polarization: -70.84 SS G_CDS: -2.09 Total: -72.93 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Atomic # 15 Polarization: 50.37 SS G_CDS: -0.22 Total: 50.15 kcal Total: -80.63 4.69 -75.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224726180.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.642 kcal (2) G-P(sol) polarization free energy of solvation -80.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds