Wall clock time and date at job start Tue Mar 31 2020 13:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42888 * 109.47121 * 2 1 4 4 P 1.61003 * 123.00160 * 180.02562 * 3 2 1 5 5 O 1.48005 * 109.46661 * 304.99850 * 4 3 2 6 6 C 1.82298 * 109.47574 * 185.00111 * 4 3 2 7 7 C 1.52996 * 109.47450 * 175.00034 * 6 4 3 8 8 O 1.42895 * 109.47194 * 179.97438 * 7 6 4 9 9 C 1.42900 * 114.00206 * 179.97438 * 8 7 6 10 10 H 1.09008 * 110.88137 * 32.42926 * 9 8 7 11 11 C 1.55154 * 111.03913 * 156.33029 * 9 8 7 12 12 C 1.54325 * 102.94303 * 153.59305 * 11 9 8 13 13 N 1.47290 * 107.30599 * 337.81911 * 12 11 9 14 14 C 1.36938 * 125.79079 * 178.92205 * 13 12 11 15 15 H 1.08005 * 119.99558 * 180.02562 * 14 13 12 16 16 C 1.38811 * 120.00146 * 0.02562 * 14 13 12 17 17 N 1.31620 * 120.00086 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99779 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47294 * 89.99594 * 18 16 14 20 20 H 1.48503 * 109.46797 * 209.99511 * 18 16 14 21 21 H 1.48500 * 109.47035 * 329.99310 * 18 16 14 22 22 C 1.47425 * 108.55742 * 358.92448 * 13 12 11 23 23 O 1.61004 * 109.47091 * 64.99653 * 4 3 2 24 24 C 1.42896 * 123.00024 * 295.00064 * 23 4 3 25 25 C 1.52996 * 109.46977 * 179.97438 * 24 23 4 26 26 H 1.09002 * 109.46716 * 299.99876 * 1 2 3 27 27 H 1.08995 * 109.47042 * 60.00230 * 1 2 3 28 28 H 1.08999 * 109.46867 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46757 * 239.99569 * 2 1 3 30 30 H 1.09004 * 109.46911 * 120.00007 * 2 1 3 31 31 H 1.08998 * 109.47174 * 54.99106 * 6 4 3 32 32 H 1.09004 * 109.46819 * 295.00111 * 6 4 3 33 33 H 1.09001 * 109.47194 * 59.99372 * 7 6 4 34 34 H 1.09004 * 109.46825 * 299.99442 * 7 6 4 35 35 H 1.09002 * 110.72290 * 271.95991 * 11 9 8 36 36 H 1.08997 * 110.72022 * 35.22763 * 11 9 8 37 37 H 1.09004 * 109.88239 * 97.22707 * 12 11 9 38 38 H 1.08995 * 109.88239 * 218.23629 * 12 11 9 39 39 H 0.96999 * 120.00175 * 180.02562 * 17 16 14 40 40 H 1.09002 * 110.36696 * 265.26054 * 22 13 12 41 41 H 1.08995 * 110.36608 * 143.04891 * 22 13 12 42 42 H 1.09006 * 109.47468 * 300.00143 * 24 23 4 43 43 H 1.09001 * 109.47002 * 60.00456 * 24 23 4 44 44 H 1.08996 * 109.47582 * 300.00046 * 25 24 23 45 45 H 1.09001 * 109.46873 * 60.00388 * 25 24 23 46 46 H 1.09005 * 109.46915 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 15 3.5717 1.7239 -0.0006 5 8 4.2390 1.0609 1.1421 6 6 3.7621 3.5306 0.1494 7 6 5.2468 3.8784 0.2742 8 8 5.3960 5.2948 0.3912 9 6 6.7521 5.7281 0.5145 10 1 7.4221 5.0704 -0.0393 11 6 6.9106 7.2006 0.0521 12 6 8.1392 7.6837 0.8514 13 7 8.2712 6.8045 2.0257 14 6 9.2503 6.8843 2.9798 15 1 9.2578 6.1879 3.8053 16 6 10.2330 7.8601 2.8859 17 7 10.2241 8.7084 1.8796 18 14 11.5690 7.9684 4.1871 19 1 12.7208 7.1216 3.7855 20 1 12.0146 9.3784 4.3227 21 1 11.0333 7.4913 5.4873 22 6 7.1718 5.8226 2.0027 23 8 4.2430 1.2258 -1.3767 24 6 4.3504 -0.1531 -1.7358 25 6 5.0349 -0.2732 -3.0989 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.2314 3.8796 1.0352 32 1 3.3488 4.0142 -0.7357 33 1 5.7775 3.5294 -0.6116 34 1 5.6600 3.3949 1.1594 35 1 7.1040 7.2497 -1.0195 36 1 6.0274 7.7838 0.3126 37 1 9.0345 7.6133 0.2336 38 1 7.9906 8.7147 1.1723 39 1 10.9111 9.3901 1.8138 40 1 6.3375 6.1729 2.6106 41 1 7.5206 4.8541 2.3607 42 1 4.9400 -0.6793 -0.9851 43 1 3.3546 -0.5931 -1.7898 44 1 4.4450 0.2528 -3.8494 45 1 6.0307 0.1669 -3.0454 46 1 5.1164 -1.3251 -3.3730 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224726181.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:49 Heat of formation + Delta-G solvation = -208.403150 kcal Electronic energy + Delta-G solvation = -25235.988697 eV Core-core repulsion = 21432.428721 eV Total energy + Delta-G solvation = -3803.559976 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.158 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -38.40973 -38.14284 -37.32503 -36.01561 -33.28329 -32.35742 -31.77137 -31.42141 -30.83237 -29.05521 -26.97097 -24.42746 -24.03887 -23.32030 -22.90693 -20.33677 -20.04720 -19.53606 -18.07572 -17.02103 -16.72641 -16.50992 -15.77019 -15.74831 -15.50542 -14.71420 -14.64554 -14.62264 -14.34167 -13.86482 -13.30286 -13.23675 -13.05752 -12.92639 -12.70848 -12.61239 -12.45079 -12.27998 -12.03539 -11.92636 -11.79965 -11.65912 -11.34771 -11.02563 -10.92658 -10.86406 -10.73072 -10.68162 -10.50296 -10.30338 -10.14942 -10.05913 -9.77230 -9.67957 -9.11429 -8.57552 -6.81086 -5.68267 -3.02073 0.84124 3.09772 3.43600 3.48066 3.50580 3.88755 4.13735 4.41204 4.53399 4.53623 4.55519 4.59441 4.62417 4.73868 4.77077 4.92096 5.13659 5.21650 5.26771 5.39859 5.40422 5.43590 5.47110 5.50737 5.55902 5.59297 5.71568 5.71693 5.77205 5.82047 5.85972 6.25713 6.49122 6.52971 6.70231 6.74076 6.86186 7.25493 7.57051 7.58341 7.61801 7.84180 8.27317 9.24102 9.84201 10.50521 11.43974 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.022227 B = 0.002369 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.408798 B =11814.183728 C =11942.116896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.102 3.898 3 O -0.748 6.748 4 P 2.389 2.611 5 O -1.017 7.017 6 C -0.720 4.720 7 C 0.078 3.922 8 O -0.378 6.378 9 C 0.068 3.932 10 H 0.069 0.931 11 C -0.137 4.137 12 C 0.179 3.821 13 N -0.604 5.604 14 C -0.226 4.226 15 H 0.079 0.921 16 C -0.010 4.010 17 N -0.924 5.924 18 Si 0.915 3.085 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.116 3.884 23 O -0.746 6.746 24 C 0.102 3.898 25 C -0.160 4.160 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.123 0.877 32 H 0.104 0.896 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.049 0.951 38 H 0.047 0.953 39 H 0.252 0.748 40 H 0.027 0.973 41 H 0.041 0.959 42 H 0.078 0.922 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.452 -21.721 -11.671 31.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.029 3.971 3 O -0.769 6.769 4 P 2.594 2.406 5 O -1.118 7.118 6 C -0.745 4.745 7 C 0.001 3.999 8 O -0.297 6.297 9 C 0.010 3.990 10 H 0.087 0.913 11 C -0.176 4.176 12 C 0.054 3.946 13 N -0.332 5.332 14 C -0.355 4.355 15 H 0.097 0.903 16 C -0.206 4.206 17 N -0.572 5.572 18 Si 0.745 3.255 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.206 1.206 22 C -0.011 4.011 23 O -0.767 6.767 24 C 0.030 3.970 25 C -0.217 4.217 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.141 0.859 32 H 0.123 0.877 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.059 0.941 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.438 -20.397 -11.740 30.524 hybrid contribution 0.751 0.872 0.504 1.256 sum -18.686 -19.525 -11.236 29.269 Atomic orbital electron populations 1.21913 0.93198 1.02715 1.03824 1.22433 0.96941 0.76253 1.01462 1.88028 1.55776 1.37840 1.95258 0.89863 0.48032 0.51756 0.50933 1.95143 1.78505 1.79324 1.58807 1.31336 1.04297 1.28935 1.09977 1.21939 0.91660 0.84848 1.01451 1.87884 1.27551 1.19987 1.94295 1.23502 0.81104 0.96455 0.97936 0.91305 1.22990 1.00956 0.93705 0.99912 1.21210 0.92166 0.94106 0.87105 1.44418 1.28159 1.33830 1.26759 1.19096 1.02042 1.12688 1.01627 0.90267 1.24826 0.99227 0.98018 0.98557 1.69956 1.35651 1.20513 1.31089 0.86065 0.81738 0.76865 0.80793 1.21559 1.21679 1.20636 1.21947 0.91834 0.93789 0.93508 1.88055 1.86915 1.35335 1.66433 1.22427 1.00340 0.75220 0.99063 1.21911 1.02152 1.02408 0.95218 0.91109 0.91586 0.90441 0.92374 0.90400 0.85917 0.87738 0.92808 0.91052 0.91805 0.91569 0.93241 0.93474 0.93735 0.95490 0.94081 0.90384 0.92517 0.91600 0.90968 0.90487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.71 10.28 37.16 0.38 -0.33 16 2 C 0.10 0.60 6.99 37.16 0.26 0.86 16 3 O -0.75 -6.51 10.19 -11.30 -0.12 -6.63 16 4 P 2.39 26.12 5.36 -42.89 -0.23 25.89 16 5 O -1.02 -15.21 18.55 -9.10 -0.17 -15.38 16 6 C -0.72 -9.74 6.71 37.16 0.25 -9.49 16 7 C 0.08 1.29 5.81 37.16 0.22 1.51 16 8 O -0.38 -7.45 10.16 -35.23 -0.36 -7.80 16 9 C 0.07 1.42 3.49 -24.58 -0.09 1.34 16 10 H 0.07 1.37 7.90 -51.92 -0.41 0.96 16 11 C -0.14 -2.92 6.69 -24.90 -0.17 -3.08 16 12 C 0.18 4.64 5.38 -2.92 -0.02 4.63 16 13 N -0.60 -16.69 3.40 -169.86 -0.58 -17.27 16 14 C -0.23 -6.66 10.28 -15.06 -0.15 -6.82 16 15 H 0.08 2.25 7.83 -52.48 -0.41 1.84 16 16 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 17 N -0.92 -28.08 10.33 55.49 0.57 -27.50 16 18 Si 0.91 22.86 29.55 -169.99 -5.02 17.84 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 22 C 0.12 2.75 6.96 -2.53 -0.02 2.73 16 23 O -0.75 -6.90 10.19 -11.30 -0.12 -7.02 16 24 C 0.10 0.65 6.99 37.16 0.26 0.91 16 25 C -0.16 -0.85 10.28 37.16 0.38 -0.46 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.06 0.19 5.60 -51.93 -0.29 -0.10 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.12 1.69 8.14 -51.93 -0.42 1.27 16 32 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 33 H 0.05 0.79 8.11 -51.93 -0.42 0.37 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.05 1.38 7.39 -51.93 -0.38 0.99 16 38 H 0.05 1.33 7.51 -51.93 -0.39 0.94 16 39 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.19 5.60 -51.93 -0.29 -0.10 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 LS Contribution 384.80 15.07 5.80 5.80 Total: -1.00 -36.95 384.80 -7.08 -44.02 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -8.07 Total: -3.35 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 1.21 Total: -8.60 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 0.00 Total: -44.78 kcal Atomic # 8 Polarization: -36.07 SS G_CDS: -0.76 Total: -36.82 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Atomic # 15 Polarization: 26.12 SS G_CDS: -0.23 Total: 25.89 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.95 -7.08 -44.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224726181.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.379 kcal (2) G-P(sol) polarization free energy of solvation -36.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds