Wall clock time and date at job start Tue Mar 31 2020 13:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42888 * 109.47121 * 2 1 4 4 P 1.61003 * 123.00160 * 180.02562 * 3 2 1 5 5 O 1.48005 * 109.46661 * 304.99850 * 4 3 2 6 6 C 1.82298 * 109.47574 * 185.00111 * 4 3 2 7 7 C 1.52996 * 109.47450 * 175.00034 * 6 4 3 8 8 O 1.42895 * 109.47194 * 179.97438 * 7 6 4 9 9 C 1.42900 * 114.00206 * 179.97438 * 8 7 6 10 10 H 1.09008 * 110.88137 * 32.42926 * 9 8 7 11 11 C 1.55154 * 111.03913 * 156.33029 * 9 8 7 12 12 C 1.54325 * 102.94303 * 153.59305 * 11 9 8 13 13 N 1.47290 * 107.30599 * 337.81911 * 12 11 9 14 14 C 1.36938 * 125.79079 * 178.92205 * 13 12 11 15 15 H 1.08005 * 119.99558 * 180.02562 * 14 13 12 16 16 C 1.38811 * 120.00146 * 0.02562 * 14 13 12 17 17 N 1.31620 * 120.00086 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99779 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47294 * 89.99594 * 18 16 14 20 20 H 1.48503 * 109.46797 * 209.99511 * 18 16 14 21 21 H 1.48500 * 109.47035 * 329.99310 * 18 16 14 22 22 C 1.47425 * 108.55742 * 358.92448 * 13 12 11 23 23 O 1.61004 * 109.47091 * 64.99653 * 4 3 2 24 24 C 1.42896 * 123.00024 * 295.00064 * 23 4 3 25 25 C 1.52996 * 109.46977 * 179.97438 * 24 23 4 26 26 H 1.09002 * 109.46716 * 299.99876 * 1 2 3 27 27 H 1.08995 * 109.47042 * 60.00230 * 1 2 3 28 28 H 1.08999 * 109.46867 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46757 * 239.99569 * 2 1 3 30 30 H 1.09004 * 109.46911 * 120.00007 * 2 1 3 31 31 H 1.08998 * 109.47174 * 54.99106 * 6 4 3 32 32 H 1.09004 * 109.46819 * 295.00111 * 6 4 3 33 33 H 1.09001 * 109.47194 * 59.99372 * 7 6 4 34 34 H 1.09004 * 109.46825 * 299.99442 * 7 6 4 35 35 H 1.09002 * 110.72290 * 271.95991 * 11 9 8 36 36 H 1.08997 * 110.72022 * 35.22763 * 11 9 8 37 37 H 1.09004 * 109.88239 * 97.22707 * 12 11 9 38 38 H 1.08995 * 109.88239 * 218.23629 * 12 11 9 39 39 H 0.96999 * 120.00175 * 180.02562 * 17 16 14 40 40 H 1.09002 * 110.36696 * 265.26054 * 22 13 12 41 41 H 1.08995 * 110.36608 * 143.04891 * 22 13 12 42 42 H 1.09006 * 109.47468 * 300.00143 * 24 23 4 43 43 H 1.09001 * 109.47002 * 60.00456 * 24 23 4 44 44 H 1.08996 * 109.47582 * 300.00046 * 25 24 23 45 45 H 1.09001 * 109.46873 * 60.00388 * 25 24 23 46 46 H 1.09005 * 109.46915 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 15 3.5717 1.7239 -0.0006 5 8 4.2390 1.0609 1.1421 6 6 3.7621 3.5306 0.1494 7 6 5.2468 3.8784 0.2742 8 8 5.3960 5.2948 0.3912 9 6 6.7521 5.7281 0.5145 10 1 7.4221 5.0704 -0.0393 11 6 6.9106 7.2006 0.0521 12 6 8.1392 7.6837 0.8514 13 7 8.2712 6.8045 2.0257 14 6 9.2503 6.8843 2.9798 15 1 9.2578 6.1879 3.8053 16 6 10.2330 7.8601 2.8859 17 7 10.2241 8.7084 1.8796 18 14 11.5690 7.9684 4.1871 19 1 12.7208 7.1216 3.7855 20 1 12.0146 9.3784 4.3227 21 1 11.0333 7.4913 5.4873 22 6 7.1718 5.8226 2.0027 23 8 4.2430 1.2258 -1.3767 24 6 4.3504 -0.1531 -1.7358 25 6 5.0349 -0.2732 -3.0989 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.2314 3.8796 1.0352 32 1 3.3488 4.0142 -0.7357 33 1 5.7775 3.5294 -0.6116 34 1 5.6600 3.3949 1.1594 35 1 7.1040 7.2497 -1.0195 36 1 6.0274 7.7838 0.3126 37 1 9.0345 7.6133 0.2336 38 1 7.9906 8.7147 1.1723 39 1 10.9111 9.3901 1.8138 40 1 6.3375 6.1729 2.6106 41 1 7.5206 4.8541 2.3607 42 1 4.9400 -0.6793 -0.9851 43 1 3.3546 -0.5931 -1.7898 44 1 4.4450 0.2528 -3.8494 45 1 6.0307 0.1669 -3.0454 46 1 5.1164 -1.3251 -3.3730 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224726181.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:49 Heat of formation + Delta-G solvation = -232.742700 kcal Electronic energy + Delta-G solvation = -25237.044139 eV Core-core repulsion = 21432.428721 eV Total energy + Delta-G solvation = -3804.615418 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.158 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.09209 -38.76504 -37.94942 -37.80641 -34.49156 -34.17822 -32.48538 -32.03990 -31.84931 -30.99272 -28.89029 -26.46322 -24.72108 -24.01917 -23.70500 -22.19646 -21.98160 -20.22311 -19.05984 -18.71487 -18.25033 -17.15245 -16.97371 -16.77931 -16.29636 -16.26263 -16.18134 -15.83005 -15.29853 -15.19006 -14.86656 -14.54158 -14.20918 -13.87688 -13.69894 -13.58055 -13.42632 -13.31294 -13.10110 -13.03519 -12.94728 -12.87290 -12.70624 -12.49751 -12.34711 -12.19521 -12.14216 -12.06603 -11.83995 -11.60193 -11.55647 -11.46401 -11.25212 -11.15043 -10.79346 -10.71642 -9.01557 -7.91727 -5.29697 0.08106 1.43605 1.46694 1.55604 2.27482 2.46517 2.66013 3.26884 3.38074 3.46713 3.63742 3.69874 3.77320 3.90066 3.92552 4.01689 4.03831 4.12581 4.18546 4.22852 4.33420 4.38122 4.43452 4.53410 4.56482 4.56898 4.62931 4.79890 4.87384 4.91654 4.95299 5.04599 5.08162 5.14269 5.35866 5.38404 5.42657 5.51336 5.62852 5.98733 6.12340 6.23809 6.46358 7.01224 7.65595 8.31235 9.19299 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.022227 B = 0.002369 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.408798 B =11814.183728 C =11942.116896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.080 3.920 3 O -0.754 6.754 4 P 2.440 2.560 5 O -1.066 7.066 6 C -0.731 4.731 7 C 0.063 3.937 8 O -0.386 6.386 9 C 0.082 3.918 10 H 0.082 0.918 11 C -0.124 4.124 12 C 0.187 3.813 13 N -0.625 5.625 14 C -0.251 4.251 15 H 0.082 0.918 16 C -0.065 4.065 17 N -0.951 5.951 18 Si 0.987 3.013 19 H -0.281 1.281 20 H -0.291 1.291 21 H -0.270 1.270 22 C 0.111 3.889 23 O -0.755 6.755 24 C 0.081 3.919 25 C -0.162 4.162 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.025 0.975 38 H 0.015 0.985 39 H 0.250 0.750 40 H 0.019 0.981 41 H 0.045 0.955 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.068 0.932 45 H 0.057 0.943 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.416 -23.633 -12.666 33.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.008 3.992 3 O -0.778 6.778 4 P 2.645 2.355 5 O -1.163 7.163 6 C -0.757 4.757 7 C -0.013 4.013 8 O -0.306 6.306 9 C 0.023 3.977 10 H 0.100 0.900 11 C -0.162 4.162 12 C 0.062 3.938 13 N -0.353 5.353 14 C -0.379 4.379 15 H 0.100 0.900 16 C -0.258 4.258 17 N -0.600 5.600 18 Si 0.814 3.186 19 H -0.207 1.207 20 H -0.217 1.217 21 H -0.195 1.195 22 C -0.015 4.015 23 O -0.779 6.779 24 C 0.010 3.990 25 C -0.219 4.219 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.120 0.880 29 H 0.107 0.893 30 H 0.097 0.903 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.043 0.957 38 H 0.033 0.967 39 H 0.059 0.941 40 H 0.037 0.963 41 H 0.064 0.936 42 H 0.097 0.903 43 H 0.108 0.892 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -20.412 -22.355 -12.708 32.831 hybrid contribution 0.958 1.392 0.774 1.859 sum -19.455 -20.963 -11.934 30.989 Atomic orbital electron populations 1.21976 0.92145 1.04228 1.03432 1.22929 0.98030 0.75069 1.03150 1.88011 1.54789 1.39669 1.95341 0.88025 0.47728 0.49614 0.50130 1.95109 1.80032 1.80061 1.61100 1.31517 1.02152 1.31624 1.10373 1.22222 0.94073 0.83013 1.02024 1.87870 1.26372 1.22106 1.94203 1.23247 0.82217 0.96537 0.95667 0.89966 1.22837 0.98705 0.93868 1.00822 1.20979 0.93349 0.92619 0.86868 1.44710 1.28688 1.34975 1.26887 1.19482 1.02916 1.13097 1.02425 0.89985 1.25755 1.01553 0.97623 1.00868 1.70166 1.36245 1.20866 1.32707 0.84962 0.78600 0.76663 0.78365 1.20747 1.21689 1.19473 1.22068 0.90566 0.93016 0.95836 1.88035 1.86964 1.37158 1.65711 1.22902 1.02610 0.73894 0.99640 1.21973 1.01216 1.03978 0.94686 0.92182 0.91334 0.87979 0.89349 0.90253 0.86621 0.86366 0.90759 0.92016 0.88822 0.91106 0.95721 0.96723 0.94053 0.96285 0.93637 0.90309 0.89237 0.91309 0.92403 0.88040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 10.28 71.98 0.74 -0.36 16 2 C 0.08 0.77 6.99 71.98 0.50 1.27 16 3 O -0.75 -11.91 10.19 -18.20 -0.19 -12.10 16 4 P 2.44 50.39 5.36 -40.88 -0.22 50.17 16 5 O -1.07 -31.43 18.55 -11.84 -0.22 -31.65 16 6 C -0.73 -19.04 6.71 71.98 0.48 -18.55 16 7 C 0.06 2.02 5.81 71.98 0.42 2.44 16 8 O -0.39 -14.78 10.16 -148.98 -1.51 -16.29 16 9 C 0.08 3.34 3.49 31.98 0.11 3.46 16 10 H 0.08 3.15 7.90 -2.38 -0.02 3.13 16 11 C -0.12 -5.18 6.69 31.78 0.21 -4.97 16 12 C 0.19 9.92 5.38 86.68 0.47 10.38 16 13 N -0.62 -35.18 3.40 -691.30 -2.35 -37.53 16 14 C -0.25 -14.98 10.28 84.03 0.86 -14.12 16 15 H 0.08 4.70 7.83 -2.91 -0.02 4.68 16 16 C -0.07 -3.85 5.49 84.86 0.47 -3.39 16 17 N -0.95 -59.03 10.33 21.65 0.22 -58.81 16 18 Si 0.99 47.33 29.55 68.60 2.03 49.36 16 19 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 20 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 22 C 0.11 5.31 6.96 86.85 0.60 5.92 16 23 O -0.75 -12.59 10.19 -18.20 -0.19 -12.78 16 24 C 0.08 0.86 6.99 71.98 0.50 1.36 16 25 C -0.16 -1.36 10.28 71.98 0.74 -0.62 16 26 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 29 H 0.09 0.27 5.60 -2.39 -0.01 0.26 16 30 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 32 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.07 2.06 8.11 -2.39 -0.02 2.04 16 34 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 36 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 37 H 0.02 1.41 7.39 -2.38 -0.02 1.39 16 38 H 0.01 0.85 7.51 -2.39 -0.02 0.84 16 39 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 40 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 43 H 0.09 0.31 5.60 -2.39 -0.01 0.30 16 44 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.10 0.34 8.14 -2.38 -0.02 0.32 16 Total: -1.00 -80.63 384.80 4.62 -76.00 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 0.94 Total: 10.80 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: 6.11 Total: -17.17 kcal Atomic # 7 Polarization: -94.21 SS G_CDS: -2.13 Total: -96.33 kcal Atomic # 8 Polarization: -70.72 SS G_CDS: -2.10 Total: -72.82 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Atomic # 15 Polarization: 50.39 SS G_CDS: -0.22 Total: 50.17 kcal Total: -80.63 4.62 -76.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224726181.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.740 kcal (2) G-P(sol) polarization free energy of solvation -80.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds