Wall clock time and date at job start Tue Mar 31 2020 13:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45197 * 109.47729 * 2 1 4 4 C 1.34740 * 117.00376 * 180.02562 * 3 2 1 5 5 O 1.21506 * 120.00305 * 359.97438 * 4 3 2 6 6 C 1.47396 * 120.00062 * 179.97438 * 4 3 2 7 7 C 1.39873 * 120.98885 * 0.24881 * 6 4 3 8 8 N 1.32166 * 118.97336 * 180.24793 * 7 6 4 9 9 C 1.31944 * 121.15140 * 359.74603 * 8 7 6 10 10 C 1.50697 * 118.89872 * 180.02562 * 9 8 7 11 11 N 1.31720 * 122.21022 * 0.02562 * 9 8 7 12 12 C 1.32781 * 120.87777 * 359.97438 * 11 9 8 13 13 O 1.35268 * 120.61651 * 179.97438 * 12 11 9 14 14 C 1.42894 * 117.00224 * 359.97438 * 13 12 11 15 15 H 1.09004 * 110.91581 * 333.90168 * 14 13 12 16 16 C 1.55153 * 111.00595 * 209.99710 * 14 13 12 17 17 C 1.54327 * 102.94777 * 206.42447 * 16 14 13 18 18 N 1.47023 * 107.26634 * 22.19238 * 17 16 14 19 19 C 1.36942 * 125.64451 * 181.02675 * 18 17 16 20 20 H 1.08001 * 119.99608 * 185.84961 * 19 18 17 21 21 C 1.38811 * 119.99859 * 5.83909 * 19 18 17 22 22 N 1.31619 * 119.99898 * 7.32562 * 21 19 18 23 23 Si 1.86798 * 119.99526 * 187.31977 * 21 19 18 24 24 H 1.48502 * 109.47424 * 265.01587 * 23 21 19 25 25 H 1.48507 * 109.46922 * 145.01666 * 23 21 19 26 26 H 1.48500 * 109.47468 * 25.02234 * 23 21 19 27 27 C 1.47421 * 108.70689 * 1.28873 * 18 17 16 28 28 H 1.09003 * 109.46799 * 300.00221 * 1 2 3 29 29 H 1.08991 * 109.47357 * 59.99673 * 1 2 3 30 30 H 1.08999 * 109.47276 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46799 * 239.99779 * 2 1 3 32 32 H 1.09005 * 109.47206 * 120.00515 * 2 1 3 33 33 H 1.07996 * 120.51041 * 359.97438 * 7 6 4 34 34 H 1.09001 * 109.47789 * 269.98574 * 10 9 8 35 35 H 1.09007 * 109.47127 * 29.98778 * 10 9 8 36 36 H 1.08995 * 109.47278 * 149.97916 * 10 9 8 37 37 H 1.09001 * 110.72119 * 88.05768 * 16 14 13 38 38 H 1.09002 * 110.72267 * 324.79134 * 16 14 13 39 39 H 1.08995 * 109.87769 * 262.77669 * 17 16 14 40 40 H 1.08994 * 109.88662 * 141.60966 * 17 16 14 41 41 H 0.97007 * 119.99060 * 179.97438 * 22 21 19 42 42 H 1.08997 * 110.36765 * 94.48217 * 27 18 17 43 43 H 1.09001 * 110.36963 * 216.80734 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3499 1.5454 -0.0005 5 8 4.0901 0.5818 -0.0005 6 6 3.9133 2.9074 -0.0011 7 6 3.0806 4.0312 0.0040 8 7 3.6285 5.2340 -0.0017 9 6 4.9390 5.3871 -0.0072 10 6 5.5092 6.7819 -0.0130 11 7 5.7656 4.3616 -0.0077 12 6 5.3061 3.1158 -0.0022 13 8 6.1598 2.0666 -0.0033 14 6 7.5568 2.3669 -0.0112 15 1 7.7429 3.3413 -0.4629 16 6 8.3606 1.2552 -0.7360 17 6 9.7555 1.3558 -0.0836 18 7 9.5809 2.0105 1.2212 19 6 10.5831 2.3057 2.1065 20 1 10.3426 2.7029 3.0816 21 6 11.9080 2.0940 1.7507 22 7 12.2110 1.7478 0.5175 23 14 13.2609 2.3007 3.0221 24 1 13.8241 3.6715 2.9274 25 1 14.3341 1.3060 2.7690 26 1 12.7000 2.0887 4.3807 27 6 8.1475 2.2910 1.4214 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.0066 3.9178 0.0082 34 1 5.6430 7.1156 -1.0421 35 1 4.8248 7.4565 0.5015 36 1 6.4723 6.7829 0.4974 37 1 8.4196 1.4570 -1.8055 38 1 7.9180 0.2764 -0.5511 39 1 10.4165 1.9524 -0.7122 40 1 10.1728 0.3585 0.0551 41 1 13.1370 1.6003 0.2689 42 1 7.6784 1.4849 1.9854 43 1 8.0154 3.2424 1.9366 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225929971.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:16 Heat of formation + Delta-G solvation = -43.127496 kcal Electronic energy + Delta-G solvation = -27172.220574 eV Core-core repulsion = 23219.434310 eV Total energy + Delta-G solvation = -3952.786264 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.56874 -40.11312 -38.95959 -36.76307 -36.32225 -33.88957 -32.98435 -32.14095 -31.80666 -29.38491 -29.14523 -27.41713 -24.97396 -24.46851 -23.94806 -23.00330 -21.48877 -20.65348 -20.15150 -18.55492 -18.11531 -17.66865 -16.87439 -16.77348 -16.55149 -15.86969 -15.16390 -14.73254 -14.41502 -14.36883 -14.22742 -13.97529 -13.85873 -13.42623 -13.08514 -12.94622 -12.62030 -12.53891 -12.39672 -12.14975 -12.07670 -11.94352 -11.82887 -11.52459 -10.96127 -10.85471 -10.79139 -10.71667 -10.42588 -10.32511 -10.16907 -10.07173 -9.91637 -9.74923 -9.50944 -9.10019 -8.65080 -6.87643 -5.72862 -3.09979 0.22210 1.01193 2.37411 2.43069 2.83596 3.39365 3.44808 3.47266 3.55270 3.66970 3.83488 4.43706 4.47280 4.58006 4.67394 4.71183 4.86272 5.00693 5.03820 5.22284 5.35894 5.37713 5.42162 5.44892 5.48916 5.55115 5.64701 5.66234 5.71156 5.72842 6.01836 6.20717 6.24298 6.37095 6.43872 6.52963 6.61954 6.71586 7.32191 7.42803 7.60243 7.66635 7.77515 7.86184 8.21807 9.16785 9.77217 10.42011 11.36676 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015299 B = 0.003249 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.803568 B = 8615.052023 C = 9855.579574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.064 3.936 3 O -0.360 6.360 4 C 0.519 3.481 5 O -0.479 6.479 6 C -0.275 4.275 7 C 0.239 3.761 8 N -0.556 5.556 9 C 0.388 3.612 10 C -0.093 4.093 11 N -0.571 5.571 12 C 0.431 3.569 13 O -0.255 6.255 14 C 0.060 3.940 15 H 0.103 0.897 16 C -0.137 4.137 17 C 0.174 3.826 18 N -0.599 5.599 19 C -0.229 4.229 20 H 0.079 0.921 21 C -0.007 4.007 22 N -0.920 5.920 23 Si 0.914 3.086 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.129 3.871 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.186 0.814 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.036 0.964 41 H 0.253 0.747 42 H 0.028 0.972 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.926 3.829 -3.837 23.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.010 4.010 3 O -0.278 6.278 4 C 0.362 3.638 5 O -0.365 6.365 6 C -0.282 4.282 7 C 0.073 3.927 8 N -0.276 5.276 9 C 0.123 3.877 10 C -0.151 4.151 11 N -0.302 5.302 12 C 0.244 3.756 13 O -0.154 6.154 14 C 0.004 3.996 15 H 0.121 0.879 16 C -0.176 4.176 17 C 0.049 3.951 18 N -0.326 5.326 19 C -0.357 4.357 20 H 0.096 0.904 21 C -0.203 4.203 22 N -0.567 5.567 23 Si 0.744 3.256 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.206 1.206 27 C 0.002 3.998 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.203 0.797 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.045 0.955 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -22.046 4.002 -3.835 22.732 hybrid contribution 0.560 -0.951 0.609 1.260 sum -21.486 3.052 -3.226 21.940 Atomic orbital electron populations 1.21808 0.92544 1.03028 1.03500 1.23031 0.95177 0.79813 1.02938 1.86477 1.23643 1.32696 1.84976 1.20293 0.80693 0.88864 0.73984 1.90947 1.59919 1.41553 1.44059 1.19904 0.91963 0.93936 1.22421 1.23526 1.00805 0.85367 0.83025 1.68382 1.13299 1.25497 1.20391 1.23350 0.85124 0.95478 0.83762 1.20733 1.02226 0.87630 1.04478 1.68228 1.40546 0.98283 1.23190 1.20167 0.87483 0.86332 0.81638 1.86495 1.19126 1.27450 1.82321 1.24212 0.74207 1.01055 1.00129 0.87895 1.23082 0.97750 0.97554 0.99174 1.21276 0.89588 0.97717 0.86476 1.44317 1.00062 1.69469 1.18796 1.19049 0.84886 1.37401 0.94361 0.90354 1.24826 0.97039 1.01800 0.96681 1.69940 1.17378 1.53263 1.16100 0.86072 0.81665 0.77394 0.80457 1.21548 1.21572 1.20603 1.21832 0.86928 0.98520 0.92533 0.91431 0.91456 0.90187 0.91071 0.91021 0.79703 0.88833 0.89002 0.88787 0.91350 0.91061 0.91307 0.94565 0.93651 0.95450 0.93663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 10.29 37.16 0.38 -0.50 16 2 C 0.06 0.58 6.19 37.16 0.23 0.81 16 3 O -0.36 -4.02 9.57 -40.60 -0.39 -4.41 16 4 C 0.52 7.47 7.90 34.46 0.27 7.74 16 5 O -0.48 -8.48 15.11 -26.38 -0.40 -8.88 16 6 C -0.27 -3.88 5.92 -104.58 -0.62 -4.50 16 7 C 0.24 2.68 10.90 -16.80 -0.18 2.50 16 8 N -0.56 -6.73 10.31 -10.43 -0.11 -6.83 16 9 C 0.39 5.02 7.64 -157.13 -1.20 3.82 16 10 C -0.09 -0.85 10.31 36.00 0.37 -0.48 16 11 N -0.57 -9.00 8.67 -10.46 -0.09 -9.09 16 12 C 0.43 7.20 7.54 -16.16 -0.12 7.08 16 13 O -0.25 -4.85 8.17 -38.65 -0.32 -5.17 16 14 C 0.06 1.21 3.38 -24.46 -0.08 1.13 16 15 H 0.10 2.06 6.98 -51.93 -0.36 1.69 16 16 C -0.14 -2.79 6.68 -24.90 -0.17 -2.96 16 17 C 0.17 4.34 5.45 -3.06 -0.02 4.32 16 18 N -0.60 -15.87 3.39 -169.93 -0.58 -16.45 16 19 C -0.23 -6.51 10.26 -15.06 -0.15 -6.66 16 20 H 0.08 2.15 7.84 -52.49 -0.41 1.74 16 21 C -0.01 -0.20 5.45 -17.43 -0.09 -0.29 16 22 N -0.92 -27.09 10.46 55.49 0.58 -26.51 16 23 Si 0.91 22.24 29.56 -169.99 -5.02 17.21 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 27 C 0.13 2.92 6.98 -2.41 -0.02 2.90 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.19 1.42 7.71 -52.49 -0.40 1.01 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.07 1.86 6.88 -51.93 -0.36 1.51 16 40 H 0.04 0.97 7.98 -51.93 -0.41 0.56 16 41 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 364.84 15.07 5.50 5.50 Total: -1.00 -33.54 364.84 -8.38 -41.92 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -6.16 Total: -2.20 kcal Atomic # 6 Polarization: 16.30 SS G_CDS: -1.40 Total: 14.90 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: -0.19 Total: -58.88 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -1.10 Total: -18.46 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.54 -8.38 -41.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225929971.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.208 kcal (2) G-P(sol) polarization free energy of solvation -33.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds