Wall clock time and date at job start Tue Mar 31 2020 13:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45197 * 109.47729 * 2 1 4 4 C 1.34740 * 117.00376 * 180.02562 * 3 2 1 5 5 O 1.21506 * 120.00305 * 359.97438 * 4 3 2 6 6 C 1.47396 * 120.00062 * 179.97438 * 4 3 2 7 7 C 1.39873 * 120.98885 * 0.24881 * 6 4 3 8 8 N 1.32166 * 118.97336 * 180.24793 * 7 6 4 9 9 C 1.31944 * 121.15140 * 359.74603 * 8 7 6 10 10 C 1.50697 * 118.89872 * 180.02562 * 9 8 7 11 11 N 1.31720 * 122.21022 * 0.02562 * 9 8 7 12 12 C 1.32781 * 120.87777 * 359.97438 * 11 9 8 13 13 O 1.35268 * 120.61651 * 179.97438 * 12 11 9 14 14 C 1.42894 * 117.00224 * 359.97438 * 13 12 11 15 15 H 1.09004 * 110.91581 * 333.90168 * 14 13 12 16 16 C 1.55153 * 111.00595 * 209.99710 * 14 13 12 17 17 C 1.54327 * 102.94777 * 206.42447 * 16 14 13 18 18 N 1.47023 * 107.26634 * 22.19238 * 17 16 14 19 19 C 1.36942 * 125.64451 * 181.02675 * 18 17 16 20 20 H 1.08001 * 119.99608 * 185.84961 * 19 18 17 21 21 C 1.38811 * 119.99859 * 5.83909 * 19 18 17 22 22 N 1.31619 * 119.99898 * 7.32562 * 21 19 18 23 23 Si 1.86798 * 119.99526 * 187.31977 * 21 19 18 24 24 H 1.48502 * 109.47424 * 265.01587 * 23 21 19 25 25 H 1.48507 * 109.46922 * 145.01666 * 23 21 19 26 26 H 1.48500 * 109.47468 * 25.02234 * 23 21 19 27 27 C 1.47421 * 108.70689 * 1.28873 * 18 17 16 28 28 H 1.09003 * 109.46799 * 300.00221 * 1 2 3 29 29 H 1.08991 * 109.47357 * 59.99673 * 1 2 3 30 30 H 1.08999 * 109.47276 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46799 * 239.99779 * 2 1 3 32 32 H 1.09005 * 109.47206 * 120.00515 * 2 1 3 33 33 H 1.07996 * 120.51041 * 359.97438 * 7 6 4 34 34 H 1.09001 * 109.47789 * 269.98574 * 10 9 8 35 35 H 1.09007 * 109.47127 * 29.98778 * 10 9 8 36 36 H 1.08995 * 109.47278 * 149.97916 * 10 9 8 37 37 H 1.09001 * 110.72119 * 88.05768 * 16 14 13 38 38 H 1.09002 * 110.72267 * 324.79134 * 16 14 13 39 39 H 1.08995 * 109.87769 * 262.77669 * 17 16 14 40 40 H 1.08994 * 109.88662 * 141.60966 * 17 16 14 41 41 H 0.97007 * 119.99060 * 179.97438 * 22 21 19 42 42 H 1.08997 * 110.36765 * 94.48217 * 27 18 17 43 43 H 1.09001 * 110.36963 * 216.80734 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3499 1.5454 -0.0005 5 8 4.0901 0.5818 -0.0005 6 6 3.9133 2.9074 -0.0011 7 6 3.0806 4.0312 0.0040 8 7 3.6285 5.2340 -0.0017 9 6 4.9390 5.3871 -0.0072 10 6 5.5092 6.7819 -0.0130 11 7 5.7656 4.3616 -0.0077 12 6 5.3061 3.1158 -0.0022 13 8 6.1598 2.0666 -0.0033 14 6 7.5568 2.3669 -0.0112 15 1 7.7429 3.3413 -0.4629 16 6 8.3606 1.2552 -0.7360 17 6 9.7555 1.3558 -0.0836 18 7 9.5809 2.0105 1.2212 19 6 10.5831 2.3057 2.1065 20 1 10.3426 2.7029 3.0816 21 6 11.9080 2.0940 1.7507 22 7 12.2110 1.7478 0.5175 23 14 13.2609 2.3007 3.0221 24 1 13.8241 3.6715 2.9274 25 1 14.3341 1.3060 2.7690 26 1 12.7000 2.0887 4.3807 27 6 8.1475 2.2910 1.4214 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.0066 3.9178 0.0082 34 1 5.6430 7.1156 -1.0421 35 1 4.8248 7.4565 0.5015 36 1 6.4723 6.7829 0.4974 37 1 8.4196 1.4570 -1.8055 38 1 7.9180 0.2764 -0.5511 39 1 10.4165 1.9524 -0.7122 40 1 10.1728 0.3585 0.0551 41 1 13.1370 1.6003 0.2689 42 1 7.6784 1.4849 1.9854 43 1 8.0154 3.2424 1.9366 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225929971.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:16 Heat of formation + Delta-G solvation = -64.312241 kcal Electronic energy + Delta-G solvation = -27173.139213 eV Core-core repulsion = 23219.434310 eV Total energy + Delta-G solvation = -3953.704903 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.67986 -41.16286 -40.39272 -38.30157 -37.59077 -34.90835 -34.56116 -33.69220 -32.50992 -31.26123 -30.14434 -29.19905 -26.77289 -25.36006 -25.34333 -23.83032 -22.58205 -22.30547 -21.98615 -19.82787 -19.25984 -19.09556 -18.58395 -17.76778 -17.56115 -17.04010 -16.80421 -16.36849 -16.01514 -15.72151 -15.35187 -15.06780 -14.91212 -14.81738 -14.30175 -14.20921 -13.99921 -13.71543 -13.58819 -13.34968 -13.21796 -12.93823 -12.90407 -12.82496 -12.70650 -12.47336 -12.25119 -12.21680 -12.06755 -11.86781 -11.75058 -11.52807 -11.45303 -11.37944 -10.79089 -10.62137 -10.33714 -9.00978 -7.89202 -5.30352 -0.82229 -0.08155 1.34381 1.39686 1.44957 1.47103 1.53882 1.58337 2.45407 2.50043 2.64930 2.86095 3.26992 3.37729 3.47975 3.56689 3.64694 3.84546 3.92017 4.00104 4.04051 4.11350 4.17999 4.38629 4.44812 4.56795 4.65724 4.70856 4.71251 4.80998 4.83633 4.87848 4.94023 4.97647 5.13506 5.26937 5.33158 5.38830 5.48667 5.58938 5.66307 5.91901 6.12446 6.61373 6.81483 7.00907 7.65239 8.29942 9.19078 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015299 B = 0.003249 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.803568 B = 8615.052023 C = 9855.579574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.054 3.946 3 O -0.347 6.347 4 C 0.524 3.476 5 O -0.520 6.520 6 C -0.284 4.284 7 C 0.258 3.742 8 N -0.549 5.549 9 C 0.383 3.617 10 C -0.091 4.091 11 N -0.594 5.594 12 C 0.407 3.593 13 O -0.269 6.269 14 C 0.082 3.918 15 H 0.104 0.896 16 C -0.124 4.124 17 C 0.183 3.817 18 N -0.619 5.619 19 C -0.250 4.250 20 H 0.081 0.919 21 C -0.060 4.060 22 N -0.947 5.947 23 Si 0.984 3.016 24 H -0.281 1.281 25 H -0.291 1.291 26 H -0.271 1.271 27 C 0.130 3.870 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.226 0.774 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.043 0.957 40 H 0.006 0.994 41 H 0.251 0.749 42 H 0.020 0.980 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.319 5.207 -3.671 26.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.019 4.019 3 O -0.264 6.264 4 C 0.368 3.632 5 O -0.410 6.410 6 C -0.291 4.291 7 C 0.092 3.908 8 N -0.268 5.268 9 C 0.119 3.881 10 C -0.149 4.149 11 N -0.326 5.326 12 C 0.220 3.780 13 O -0.170 6.170 14 C 0.025 3.975 15 H 0.122 0.878 16 C -0.162 4.162 17 C 0.058 3.942 18 N -0.346 5.346 19 C -0.379 4.379 20 H 0.099 0.901 21 C -0.254 4.254 22 N -0.594 5.594 23 Si 0.811 3.189 24 H -0.208 1.208 25 H -0.217 1.217 26 H -0.195 1.195 27 C 0.004 3.996 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.117 0.883 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.243 0.757 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.092 0.908 39 H 0.061 0.939 40 H 0.025 0.975 41 H 0.060 0.940 42 H 0.038 0.962 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -24.507 5.422 -3.665 25.366 hybrid contribution 1.127 -1.325 0.565 1.828 sum -23.381 4.098 -3.100 23.939 Atomic orbital electron populations 1.21822 0.89619 1.04472 1.04117 1.23354 0.97349 0.78609 1.02572 1.86478 1.21646 1.34129 1.84158 1.20383 0.81411 0.88471 0.72904 1.90930 1.61059 1.42777 1.46220 1.20048 0.91122 0.94886 1.23023 1.24158 1.02114 0.84012 0.80520 1.68533 1.12749 1.25583 1.19977 1.24078 0.85428 0.96112 0.82488 1.20895 1.02289 0.85866 1.05807 1.68235 1.41701 0.98481 1.24181 1.20469 0.88086 0.86381 0.83029 1.86464 1.18228 1.28825 1.83437 1.23722 0.75397 1.00658 0.97711 0.87834 1.22900 0.94993 0.98075 1.00236 1.21020 0.91807 0.95322 0.86037 1.44578 1.01321 1.69706 1.19027 1.19413 0.85864 1.37551 0.95044 0.90088 1.25710 0.99243 1.01710 0.98705 1.70143 1.17539 1.53979 1.17786 0.84999 0.78335 0.77277 0.78288 1.20798 1.21734 1.19536 1.21841 0.85256 0.98018 0.94481 0.90862 0.90725 0.88340 0.91404 0.91630 0.75726 0.87040 0.86809 0.89319 0.88826 0.90775 0.93854 0.97538 0.93999 0.96175 0.93612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 10.29 71.98 0.74 -0.55 16 2 C 0.05 0.91 6.19 71.98 0.45 1.35 16 3 O -0.35 -7.14 9.57 -56.51 -0.54 -7.68 16 4 C 0.52 14.68 7.90 70.23 0.56 15.23 16 5 O -0.52 -18.65 15.11 26.61 0.40 -18.25 16 6 C -0.28 -7.67 5.92 -19.84 -0.12 -7.78 16 7 C 0.26 5.07 10.90 85.04 0.93 5.99 16 8 N -0.55 -11.75 10.31 -186.90 -1.93 -13.68 16 9 C 0.38 9.19 7.64 138.73 1.06 10.25 16 10 C -0.09 -1.46 10.31 71.23 0.73 -0.73 16 11 N -0.59 -18.32 8.67 -299.81 -2.60 -20.92 16 12 C 0.41 13.47 7.54 85.18 0.64 14.11 16 13 O -0.27 -10.36 8.17 -65.29 -0.53 -10.89 16 14 C 0.08 3.33 3.38 32.07 0.11 3.44 16 15 H 0.10 4.18 6.98 -2.38 -0.02 4.16 16 16 C -0.12 -5.12 6.68 31.78 0.21 -4.91 16 17 C 0.18 9.48 5.45 86.73 0.47 9.96 16 18 N -0.62 -33.80 3.39 -691.54 -2.35 -36.14 16 19 C -0.25 -14.54 10.26 84.03 0.86 -13.68 16 20 H 0.08 4.52 7.84 -2.91 -0.02 4.50 16 21 C -0.06 -3.47 5.45 84.86 0.46 -3.01 16 22 N -0.95 -57.28 10.46 21.65 0.23 -57.06 16 23 Si 0.98 46.22 29.56 68.60 2.03 48.25 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 25 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 26 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 27 C 0.13 6.05 6.98 86.94 0.61 6.66 16 28 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.23 2.47 7.71 -2.91 -0.02 2.45 16 34 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 38 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 39 H 0.04 2.45 6.88 -2.39 -0.02 2.43 16 40 H 0.01 0.36 7.98 -2.39 -0.02 0.34 16 41 H 0.25 14.62 8.31 -92.70 -0.77 13.85 16 42 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -74.60 364.84 3.44 -71.16 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: 1.02 Total: 8.87 kcal Atomic # 6 Polarization: 28.63 SS G_CDS: 7.71 Total: 36.34 kcal Atomic # 7 Polarization: -121.16 SS G_CDS: -6.65 Total: -127.80 kcal Atomic # 8 Polarization: -36.15 SS G_CDS: -0.67 Total: -36.82 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -74.60 3.44 -71.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225929971.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.849 kcal (2) G-P(sol) polarization free energy of solvation -74.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds