Wall clock time and date at job start Tue Mar 31 2020 13:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45206 * 109.47406 * 2 1 4 4 C 1.34744 * 117.00047 * 180.02562 * 3 2 1 5 5 O 1.21508 * 120.00052 * 359.97438 * 4 3 2 6 6 C 1.47399 * 120.00038 * 180.02562 * 4 3 2 7 7 C 1.39873 * 120.98474 * 359.97438 * 6 4 3 8 8 N 1.32175 * 118.97429 * 179.75904 * 7 6 4 9 9 C 1.31946 * 121.14340 * 0.54025 * 8 7 6 10 10 C 1.50703 * 118.89370 * 179.71781 * 9 8 7 11 11 N 1.31724 * 122.21126 * 359.43822 * 9 8 7 12 12 C 1.32765 * 120.88088 * 0.28050 * 11 9 8 13 13 O 1.35268 * 120.62197 * 179.97438 * 12 11 9 14 14 C 1.42900 * 116.99939 * 359.97438 * 13 12 11 15 15 H 1.09007 * 110.63690 * 31.69541 * 14 13 12 16 16 C 1.55160 * 110.71986 * 155.02344 * 14 13 12 17 17 C 1.54904 * 101.57843 * 153.86980 * 16 14 13 18 18 N 1.47431 * 104.83591 * 322.99334 * 17 16 14 19 19 C 1.36935 * 125.64922 * 204.09962 * 18 17 16 20 20 H 1.08003 * 119.99817 * 180.02562 * 19 18 17 21 21 C 1.38809 * 120.00224 * 0.03376 * 19 18 17 22 22 N 1.31620 * 119.99814 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00293 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47323 * 60.00102 * 23 21 19 25 25 H 1.48495 * 109.47190 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46985 * 300.00381 * 23 21 19 27 27 C 1.47016 * 108.70063 * 24.12740 * 18 17 16 28 28 H 1.08995 * 109.47628 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47182 * 300.00340 * 1 2 3 30 30 H 1.09003 * 109.47044 * 60.00223 * 1 2 3 31 31 H 1.08997 * 109.47237 * 240.00039 * 2 1 3 32 32 H 1.09003 * 109.47044 * 119.99776 * 2 1 3 33 33 H 1.08006 * 120.51402 * 0.04406 * 7 6 4 34 34 H 1.09002 * 109.47152 * 269.73118 * 10 9 8 35 35 H 1.09001 * 109.46980 * 149.73218 * 10 9 8 36 36 H 1.09004 * 109.47113 * 29.73199 * 10 9 8 37 37 H 1.08996 * 111.00604 * 271.94332 * 16 14 13 38 38 H 1.08997 * 110.99715 * 35.79915 * 16 14 13 39 39 H 1.09001 * 110.36473 * 204.15535 * 17 16 14 40 40 H 1.09001 * 110.46251 * 81.87975 * 17 16 14 41 41 H 0.97003 * 119.99954 * 179.97438 * 22 21 19 42 42 H 1.08995 * 109.88602 * 239.52624 * 27 18 17 43 43 H 1.08997 * 110.00828 * 118.43059 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3499 1.5455 -0.0005 5 8 4.0900 0.5818 -0.0005 6 6 3.9133 2.9075 0.0000 7 6 3.0805 4.0313 0.0005 8 7 3.6283 5.2342 0.0059 9 6 4.9388 5.3872 0.0000 10 6 5.5091 6.7822 0.0000 11 7 5.7655 4.3617 -0.0004 12 6 5.3061 3.1161 -0.0005 13 8 6.1597 2.0668 -0.0015 14 6 7.5568 2.3671 -0.0030 15 1 7.7506 3.2964 0.5328 16 6 8.3707 1.1963 0.6089 17 6 9.7462 1.3809 -0.0792 18 7 9.4267 1.8196 -1.4500 19 6 10.2351 1.6689 -2.5449 20 1 9.9086 2.0262 -3.5104 21 6 11.4741 1.0568 -2.4141 22 7 11.8716 0.6207 -1.2375 23 14 12.5771 0.8518 -3.9076 24 1 12.8948 2.1868 -4.4753 25 1 13.8347 0.1727 -3.5047 26 1 11.8784 0.0326 -4.9303 27 6 8.0968 2.4463 -1.4465 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0064 3.9179 0.0013 34 1 5.6462 7.1187 -1.0276 35 1 6.4705 6.7817 0.5135 36 1 4.8229 7.4552 0.5143 37 1 8.4571 1.3037 1.6901 38 1 7.9288 0.2349 0.3473 39 1 10.2896 0.4362 -0.1002 40 1 10.3310 2.1427 0.4363 41 1 12.7373 0.1926 -1.1461 42 1 7.4314 1.9077 -2.1211 43 1 8.1748 3.4883 -1.7565 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225929974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:19 Heat of formation + Delta-G solvation = -41.976974 kcal Electronic energy + Delta-G solvation = -27204.681833 eV Core-core repulsion = 23251.945459 eV Total energy + Delta-G solvation = -3952.736373 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.57596 -40.10116 -38.99091 -36.74389 -36.29608 -33.89669 -32.99307 -32.14066 -31.79707 -29.39521 -29.15233 -27.38880 -25.00415 -24.46762 -23.95113 -22.99996 -21.47428 -20.56323 -20.25016 -18.51365 -18.07441 -17.65923 -16.90031 -16.76306 -16.53957 -15.92237 -15.19575 -14.82250 -14.53782 -14.29807 -14.21814 -13.96216 -13.72164 -13.44545 -13.08290 -12.99661 -12.59145 -12.54872 -12.46804 -12.13576 -11.97022 -11.86704 -11.69248 -11.46988 -11.03086 -10.87876 -10.79300 -10.69925 -10.57409 -10.32716 -10.21221 -10.09108 -9.84526 -9.61276 -9.54465 -9.12153 -8.67580 -6.88232 -5.67847 -3.10066 0.21878 1.00487 2.38511 2.44115 2.84418 3.40767 3.44431 3.46112 3.54834 3.65724 3.82635 4.44266 4.47354 4.57376 4.69179 4.72564 4.86594 5.00353 5.04904 5.25282 5.32099 5.35902 5.40800 5.44982 5.49107 5.50581 5.63156 5.67317 5.69321 5.74963 6.01640 6.23205 6.27083 6.40762 6.49956 6.53175 6.62074 6.71164 7.32443 7.44283 7.58767 7.68013 7.80048 7.85018 8.31336 9.18480 9.78655 10.42198 11.36607 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013604 B = 0.003367 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.694349 B = 8314.863740 C = 9632.342948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.064 3.936 3 O -0.360 6.360 4 C 0.519 3.481 5 O -0.477 6.477 6 C -0.274 4.274 7 C 0.239 3.761 8 N -0.556 5.556 9 C 0.387 3.613 10 C -0.092 4.092 11 N -0.572 5.572 12 C 0.431 3.569 13 O -0.253 6.253 14 C 0.067 3.933 15 H 0.096 0.904 16 C -0.137 4.137 17 C 0.155 3.845 18 N -0.600 5.600 19 C -0.223 4.223 20 H 0.078 0.922 21 C -0.010 4.010 22 N -0.923 5.923 23 Si 0.918 3.082 24 H -0.285 1.285 25 H -0.289 1.289 26 H -0.284 1.284 27 C 0.127 3.873 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.186 0.814 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.115 0.885 40 H 0.018 0.982 41 H 0.254 0.746 42 H 0.029 0.971 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.640 6.421 5.730 23.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.010 4.010 3 O -0.278 6.278 4 C 0.361 3.639 5 O -0.363 6.363 6 C -0.281 4.281 7 C 0.073 3.927 8 N -0.276 5.276 9 C 0.122 3.878 10 C -0.150 4.150 11 N -0.303 5.303 12 C 0.243 3.757 13 O -0.153 6.153 14 C 0.011 3.989 15 H 0.114 0.886 16 C -0.175 4.175 17 C 0.030 3.970 18 N -0.327 5.327 19 C -0.351 4.351 20 H 0.096 0.904 21 C -0.205 4.205 22 N -0.572 5.572 23 Si 0.748 3.252 24 H -0.212 1.212 25 H -0.215 1.215 26 H -0.211 1.211 27 C 0.001 3.999 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.203 0.797 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.132 0.868 40 H 0.036 0.964 41 H 0.065 0.935 42 H 0.047 0.953 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -20.786 6.524 5.682 22.514 hybrid contribution 0.351 -0.999 -0.796 1.325 sum -20.434 5.525 4.885 21.725 Atomic orbital electron populations 1.21808 0.92545 1.03031 1.03479 1.23035 0.95167 0.79796 1.02973 1.86476 1.23628 1.32717 1.84994 1.20293 0.80717 0.88864 0.74063 1.90959 1.59905 1.41521 1.43912 1.19914 0.91980 0.93962 1.22246 1.23531 1.00817 0.85356 0.83023 1.68384 1.13283 1.25500 1.20389 1.23342 0.85168 0.95459 0.83875 1.20722 1.01989 0.87660 1.04599 1.68227 1.40573 0.98281 1.23266 1.20191 0.87549 0.86338 0.81616 1.86560 1.19018 1.27360 1.82328 1.23920 0.74636 1.00879 0.99419 0.88621 1.23267 0.98057 0.96982 0.99220 1.21994 0.89837 1.02359 0.82810 1.44349 1.14315 1.68294 1.05764 1.19031 0.96435 1.32495 0.87172 0.90449 1.24794 0.97592 1.00920 0.97231 1.69743 1.20936 1.45229 1.21285 0.86103 0.79796 0.77775 0.81531 1.21151 1.21483 1.21105 1.21546 0.89068 0.96664 0.92662 0.90182 0.91469 0.91437 0.90994 0.91058 0.79685 0.88733 0.88993 0.89037 0.91465 0.90586 0.86785 0.96399 0.93535 0.95266 0.95068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.29 37.15 0.38 -0.53 16 2 C 0.06 0.60 6.20 37.15 0.23 0.83 16 3 O -0.36 -4.12 9.57 -40.61 -0.39 -4.51 16 4 C 0.52 7.62 7.90 34.46 0.27 7.89 16 5 O -0.48 -8.68 15.11 -26.38 -0.40 -9.08 16 6 C -0.27 -3.91 5.92 -104.58 -0.62 -4.53 16 7 C 0.24 2.69 10.90 -16.79 -0.18 2.51 16 8 N -0.56 -6.69 10.31 -10.42 -0.11 -6.80 16 9 C 0.39 4.93 7.64 -157.12 -1.20 3.73 16 10 C -0.09 -0.81 10.31 36.01 0.37 -0.44 16 11 N -0.57 -8.90 8.75 -10.46 -0.09 -9.00 16 12 C 0.43 7.23 7.54 -16.17 -0.12 7.11 16 13 O -0.25 -4.90 8.09 -38.65 -0.31 -5.21 16 14 C 0.07 1.35 3.16 -24.90 -0.08 1.27 16 15 H 0.10 1.82 7.16 -51.92 -0.37 1.45 16 16 C -0.14 -2.82 6.81 -24.58 -0.17 -2.99 16 17 C 0.15 3.86 5.89 -2.53 -0.01 3.85 16 18 N -0.60 -16.06 3.39 -170.08 -0.58 -16.64 16 19 C -0.22 -6.40 10.27 -15.06 -0.15 -6.55 16 20 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 21 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 22 N -0.92 -27.10 10.09 55.49 0.56 -26.54 16 23 Si 0.92 22.34 29.55 -169.99 -5.02 17.32 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 27 C 0.13 2.92 7.02 -3.07 -0.02 2.90 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.19 1.43 7.71 -52.48 -0.40 1.03 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 39 H 0.11 3.16 5.87 -51.93 -0.30 2.85 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.03 0.70 8.06 -51.93 -0.42 0.28 16 43 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 364.14 15.07 5.49 5.49 Total: -1.00 -33.65 364.14 -8.37 -42.02 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -6.12 Total: -1.69 kcal Atomic # 6 Polarization: 16.05 SS G_CDS: -1.40 Total: 14.65 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: -0.22 Total: -58.98 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -1.10 Total: -18.80 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.65 -8.37 -42.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225929974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.042 kcal (2) G-P(sol) polarization free energy of solvation -33.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds