Wall clock time and date at job start Tue Mar 31 2020 13:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45206 * 109.47406 * 2 1 4 4 C 1.34744 * 117.00047 * 180.02562 * 3 2 1 5 5 O 1.21508 * 120.00052 * 359.97438 * 4 3 2 6 6 C 1.47399 * 120.00038 * 180.02562 * 4 3 2 7 7 C 1.39873 * 120.98474 * 359.97438 * 6 4 3 8 8 N 1.32175 * 118.97429 * 179.75904 * 7 6 4 9 9 C 1.31946 * 121.14340 * 0.54025 * 8 7 6 10 10 C 1.50703 * 118.89370 * 179.71781 * 9 8 7 11 11 N 1.31724 * 122.21126 * 359.43822 * 9 8 7 12 12 C 1.32765 * 120.88088 * 0.28050 * 11 9 8 13 13 O 1.35268 * 120.62197 * 179.97438 * 12 11 9 14 14 C 1.42900 * 116.99939 * 359.97438 * 13 12 11 15 15 H 1.09007 * 110.63690 * 31.69541 * 14 13 12 16 16 C 1.55160 * 110.71986 * 155.02344 * 14 13 12 17 17 C 1.54904 * 101.57843 * 153.86980 * 16 14 13 18 18 N 1.47431 * 104.83591 * 322.99334 * 17 16 14 19 19 C 1.36935 * 125.64922 * 204.09962 * 18 17 16 20 20 H 1.08003 * 119.99817 * 180.02562 * 19 18 17 21 21 C 1.38809 * 120.00224 * 0.03376 * 19 18 17 22 22 N 1.31620 * 119.99814 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00293 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47323 * 60.00102 * 23 21 19 25 25 H 1.48495 * 109.47190 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46985 * 300.00381 * 23 21 19 27 27 C 1.47016 * 108.70063 * 24.12740 * 18 17 16 28 28 H 1.08995 * 109.47628 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47182 * 300.00340 * 1 2 3 30 30 H 1.09003 * 109.47044 * 60.00223 * 1 2 3 31 31 H 1.08997 * 109.47237 * 240.00039 * 2 1 3 32 32 H 1.09003 * 109.47044 * 119.99776 * 2 1 3 33 33 H 1.08006 * 120.51402 * 0.04406 * 7 6 4 34 34 H 1.09002 * 109.47152 * 269.73118 * 10 9 8 35 35 H 1.09001 * 109.46980 * 149.73218 * 10 9 8 36 36 H 1.09004 * 109.47113 * 29.73199 * 10 9 8 37 37 H 1.08996 * 111.00604 * 271.94332 * 16 14 13 38 38 H 1.08997 * 110.99715 * 35.79915 * 16 14 13 39 39 H 1.09001 * 110.36473 * 204.15535 * 17 16 14 40 40 H 1.09001 * 110.46251 * 81.87975 * 17 16 14 41 41 H 0.97003 * 119.99954 * 179.97438 * 22 21 19 42 42 H 1.08995 * 109.88602 * 239.52624 * 27 18 17 43 43 H 1.08997 * 110.00828 * 118.43059 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3499 1.5455 -0.0005 5 8 4.0900 0.5818 -0.0005 6 6 3.9133 2.9075 0.0000 7 6 3.0805 4.0313 0.0005 8 7 3.6283 5.2342 0.0059 9 6 4.9388 5.3872 0.0000 10 6 5.5091 6.7822 0.0000 11 7 5.7655 4.3617 -0.0004 12 6 5.3061 3.1161 -0.0005 13 8 6.1597 2.0668 -0.0015 14 6 7.5568 2.3671 -0.0030 15 1 7.7506 3.2964 0.5328 16 6 8.3707 1.1963 0.6089 17 6 9.7462 1.3809 -0.0792 18 7 9.4267 1.8196 -1.4500 19 6 10.2351 1.6689 -2.5449 20 1 9.9086 2.0262 -3.5104 21 6 11.4741 1.0568 -2.4141 22 7 11.8716 0.6207 -1.2375 23 14 12.5771 0.8518 -3.9076 24 1 12.8948 2.1868 -4.4753 25 1 13.8347 0.1727 -3.5047 26 1 11.8784 0.0326 -4.9303 27 6 8.0968 2.4463 -1.4465 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0064 3.9179 0.0013 34 1 5.6462 7.1187 -1.0276 35 1 6.4705 6.7817 0.5135 36 1 4.8229 7.4552 0.5143 37 1 8.4571 1.3037 1.6901 38 1 7.9288 0.2349 0.3473 39 1 10.2896 0.4362 -0.1002 40 1 10.3310 2.1427 0.4363 41 1 12.7373 0.1926 -1.1461 42 1 7.4314 1.9077 -2.1211 43 1 8.1748 3.4883 -1.7565 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225929974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:19 Heat of formation + Delta-G solvation = -63.312007 kcal Electronic energy + Delta-G solvation = -27205.606989 eV Core-core repulsion = 23251.945459 eV Total energy + Delta-G solvation = -3953.661530 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.68938 -41.17489 -40.42228 -38.27994 -37.60059 -34.91150 -34.57199 -33.69254 -32.51910 -31.27014 -30.14305 -29.17337 -26.80343 -25.36849 -25.34516 -23.84225 -22.57567 -22.25692 -22.03658 -19.77717 -19.24945 -19.10755 -18.61338 -17.78822 -17.56741 -17.18409 -16.85372 -16.36506 -15.94507 -15.81644 -15.18935 -15.07827 -14.92837 -14.84014 -14.42492 -14.23541 -13.80294 -13.61372 -13.52619 -13.34424 -13.19359 -13.01500 -12.91355 -12.84455 -12.68002 -12.49128 -12.38564 -12.22975 -12.09186 -11.91133 -11.58798 -11.54108 -11.44980 -11.41405 -10.80951 -10.63698 -10.35019 -9.01069 -7.84122 -5.30562 -0.82682 -0.08932 1.33478 1.39571 1.44617 1.48543 1.53819 1.57556 2.44747 2.49802 2.64819 2.85856 3.26351 3.39565 3.47709 3.57648 3.58682 3.85914 3.91478 3.99779 4.02827 4.10415 4.18227 4.37550 4.45924 4.59019 4.63999 4.71286 4.76132 4.80446 4.83880 4.87333 4.92493 4.96711 5.12534 5.26599 5.36995 5.37782 5.48395 5.58830 5.68252 5.93369 6.21093 6.60389 6.80711 7.02091 7.66197 8.29814 9.18349 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013604 B = 0.003367 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.694349 B = 8314.863740 C = 9632.342948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.054 3.946 3 O -0.347 6.347 4 C 0.523 3.477 5 O -0.521 6.521 6 C -0.285 4.285 7 C 0.258 3.742 8 N -0.549 5.549 9 C 0.382 3.618 10 C -0.090 4.090 11 N -0.592 5.592 12 C 0.407 3.593 13 O -0.271 6.271 14 C 0.087 3.913 15 H 0.107 0.893 16 C -0.123 4.123 17 C 0.159 3.841 18 N -0.621 5.621 19 C -0.249 4.249 20 H 0.079 0.921 21 C -0.061 4.061 22 N -0.947 5.947 23 Si 0.987 3.013 24 H -0.276 1.276 25 H -0.288 1.288 26 H -0.278 1.278 27 C 0.130 3.870 28 H 0.098 0.902 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.226 0.774 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.098 0.902 38 H 0.065 0.935 39 H 0.084 0.916 40 H 0.005 0.995 41 H 0.252 0.748 42 H 0.014 0.986 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.837 7.923 5.707 25.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.019 4.019 3 O -0.264 6.264 4 C 0.367 3.633 5 O -0.411 6.411 6 C -0.292 4.292 7 C 0.092 3.908 8 N -0.268 5.268 9 C 0.118 3.882 10 C -0.148 4.148 11 N -0.324 5.324 12 C 0.220 3.780 13 O -0.172 6.172 14 C 0.031 3.969 15 H 0.125 0.875 16 C -0.162 4.162 17 C 0.034 3.966 18 N -0.349 5.349 19 C -0.377 4.377 20 H 0.096 0.904 21 C -0.254 4.254 22 N -0.596 5.596 23 Si 0.814 3.186 24 H -0.201 1.201 25 H -0.214 1.214 26 H -0.204 1.204 27 C 0.004 3.996 28 H 0.117 0.883 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.242 0.758 34 H 0.125 0.875 35 H 0.112 0.888 36 H 0.133 0.867 37 H 0.117 0.883 38 H 0.084 0.916 39 H 0.102 0.898 40 H 0.023 0.977 41 H 0.061 0.939 42 H 0.032 0.968 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -23.045 8.074 5.664 25.067 hybrid contribution 0.877 -1.396 -0.789 1.827 sum -22.168 6.679 4.875 23.660 Atomic orbital electron populations 1.21822 0.89529 1.04484 1.04143 1.23355 0.97407 0.78623 1.02525 1.86478 1.21633 1.34103 1.84170 1.20424 0.81417 0.88538 0.72902 1.90940 1.61087 1.42842 1.46216 1.20061 0.91235 0.94831 1.23069 1.24150 1.02093 0.84017 0.80508 1.68541 1.12835 1.25487 1.19984 1.24120 0.85423 0.96173 0.82447 1.20902 1.02471 0.85724 1.05690 1.68238 1.41635 0.98342 1.24189 1.20486 0.88095 0.86440 0.83009 1.86523 1.18338 1.28910 1.83431 1.23519 0.75634 1.00713 0.97046 0.87510 1.23065 0.95542 0.96907 1.00673 1.21763 0.91864 1.00242 0.82686 1.44634 1.15402 1.68852 1.05979 1.19388 0.97300 1.33026 0.88014 0.90359 1.25683 0.98894 1.00601 1.00218 1.69983 1.20998 1.45503 1.23079 0.85045 0.77570 0.77944 0.78086 1.20137 1.21398 1.20431 1.21565 0.87357 0.95985 0.94688 0.88342 0.90639 0.90867 0.91773 0.91394 0.75776 0.87460 0.88847 0.86694 0.88338 0.91626 0.89765 0.97660 0.93877 0.96775 0.94845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 10.29 71.98 0.74 -0.64 16 2 C 0.05 0.95 6.20 71.98 0.45 1.40 16 3 O -0.35 -7.42 9.57 -56.54 -0.54 -7.96 16 4 C 0.52 15.16 7.90 70.23 0.56 15.71 16 5 O -0.52 -19.43 15.11 26.60 0.40 -19.03 16 6 C -0.28 -7.86 5.92 -19.84 -0.12 -7.97 16 7 C 0.26 5.14 10.90 85.04 0.93 6.06 16 8 N -0.55 -11.68 10.31 -186.88 -1.93 -13.60 16 9 C 0.38 8.98 7.64 138.73 1.06 10.04 16 10 C -0.09 -1.36 10.31 71.24 0.73 -0.63 16 11 N -0.59 -17.93 8.75 -299.82 -2.62 -20.55 16 12 C 0.41 13.56 7.54 85.19 0.64 14.20 16 13 O -0.27 -10.67 8.09 -65.30 -0.53 -11.20 16 14 C 0.09 3.53 3.16 31.78 0.10 3.63 16 15 H 0.11 4.06 7.16 -2.38 -0.02 4.04 16 16 C -0.12 -5.18 6.81 31.99 0.22 -4.96 16 17 C 0.16 8.22 5.89 86.85 0.51 8.73 16 18 N -0.62 -34.29 3.39 -692.01 -2.35 -36.64 16 19 C -0.25 -14.61 10.27 84.03 0.86 -13.75 16 20 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 21 C -0.06 -3.54 5.49 84.86 0.47 -3.07 16 22 N -0.95 -56.99 10.09 21.65 0.22 -56.77 16 23 Si 0.99 46.39 29.55 68.60 2.03 48.42 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 25 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 26 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 27 C 0.13 6.13 7.02 86.73 0.61 6.74 16 28 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.23 2.55 7.71 -2.91 -0.02 2.52 16 34 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 38 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 39 H 0.08 4.87 5.87 -2.39 -0.01 4.86 16 40 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 41 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 42 H 0.01 0.71 8.06 -2.39 -0.02 0.69 16 43 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -75.07 364.14 3.45 -71.61 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 1.02 Total: 10.23 kcal Atomic # 6 Polarization: 27.74 SS G_CDS: 7.75 Total: 35.49 kcal Atomic # 7 Polarization: -120.89 SS G_CDS: -6.68 Total: -127.57 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -0.67 Total: -38.19 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -75.07 3.45 -71.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225929974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.301 kcal (2) G-P(sol) polarization free energy of solvation -75.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds