Wall clock time and date at job start Tue Mar 31 2020 13:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45200 * 109.47331 * 2 1 4 4 C 1.34746 * 117.00229 * 180.02562 * 3 2 1 5 5 O 1.21504 * 119.99660 * 359.97438 * 4 3 2 6 6 C 1.47396 * 119.99967 * 180.02562 * 4 3 2 7 7 C 1.39866 * 120.98681 * 0.24253 * 6 4 3 8 8 N 1.32171 * 118.97126 * 180.29935 * 7 6 4 9 9 C 1.31952 * 121.14795 * 359.72139 * 8 7 6 10 10 C 1.50702 * 118.89058 * 180.02562 * 9 8 7 11 11 N 1.31717 * 122.20971 * 0.02562 * 9 8 7 12 12 C 1.32774 * 120.88233 * 359.97438 * 11 9 8 13 13 O 1.35265 * 120.61857 * 180.02562 * 12 11 9 14 14 C 1.42895 * 117.00402 * 359.97438 * 13 12 11 15 15 C 1.53514 * 114.17121 * 210.00327 * 14 13 12 16 16 N 1.47483 * 87.92777 * 220.32774 * 15 14 13 17 17 C 1.46903 * 110.99717 * 138.70421 * 16 15 14 18 18 C 1.50694 * 109.47066 * 169.99804 * 17 16 15 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46985 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47276 * 299.99832 * 22 20 18 25 25 H 1.48498 * 109.47150 * 60.00043 * 22 20 18 26 26 C 1.47480 * 87.83900 * 27.00973 * 16 15 14 27 27 H 1.08995 * 109.47087 * 300.00217 * 1 2 3 28 28 H 1.08999 * 109.47189 * 59.99978 * 1 2 3 29 29 H 1.09003 * 109.46914 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47277 * 240.00005 * 2 1 3 31 31 H 1.08999 * 109.47189 * 120.00021 * 2 1 3 32 32 H 1.07999 * 120.51284 * 0.02562 * 7 6 4 33 33 H 1.08993 * 109.47075 * 269.97394 * 10 9 8 34 34 H 1.08996 * 109.47500 * 29.98295 * 10 9 8 35 35 H 1.09001 * 109.46521 * 149.98323 * 10 9 8 36 36 H 1.09011 * 113.25486 * 342.95410 * 14 13 12 37 37 H 1.09000 * 113.47331 * 105.56452 * 15 14 13 38 38 H 1.08997 * 113.47627 * 335.09577 * 15 14 13 39 39 H 1.09007 * 109.47052 * 49.99488 * 17 16 15 40 40 H 1.09003 * 109.46808 * 290.00181 * 17 16 15 41 41 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 42 42 H 1.09004 * 113.47132 * 87.75237 * 26 16 15 43 43 H 1.09000 * 113.47538 * 218.21976 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3499 1.5455 -0.0005 5 8 4.0900 0.5819 -0.0005 6 6 3.9133 2.9075 0.0000 7 6 3.0805 4.0312 0.0061 8 7 3.6283 5.2341 0.0004 9 6 4.9389 5.3872 -0.0056 10 6 5.5089 6.7822 -0.0114 11 7 5.7655 4.3617 -0.0065 12 6 5.3061 3.1160 -0.0010 13 8 6.1598 2.0668 -0.0015 14 6 7.5568 2.3671 -0.0087 15 6 8.4232 1.3112 -0.7096 16 7 9.4165 1.4899 0.3658 17 6 9.9739 0.1979 0.7876 18 6 11.1488 0.4320 1.7017 19 1 11.4516 1.4398 1.9447 20 6 11.8381 -0.6405 2.2270 21 7 11.4697 -1.8677 1.9307 22 14 13.2950 -0.3502 3.3595 23 1 13.8584 -1.6564 3.7860 24 1 14.3353 0.4265 2.6386 25 1 12.8491 0.4099 4.5547 26 6 8.3068 1.8996 1.2465 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.0065 3.9178 0.0110 33 1 5.6425 7.1158 -1.0404 34 1 4.8246 7.4566 0.5034 35 1 6.4722 6.7831 0.4987 36 1 7.7751 3.3928 -0.3065 37 1 8.7827 1.6254 -1.6894 38 1 7.9720 0.3191 -0.7236 39 1 10.3014 -0.3603 -0.0896 40 1 9.2099 -0.3721 1.3164 41 1 11.9549 -2.6222 2.2999 42 1 7.8246 1.0644 1.7545 43 1 8.5677 2.7123 1.9244 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225932308.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:13 Heat of formation + Delta-G solvation = -30.626263 kcal Electronic energy + Delta-G solvation = -26663.859132 eV Core-core repulsion = 22711.614963 eV Total energy + Delta-G solvation = -3952.244169 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.70649 -40.20340 -39.80226 -37.65186 -36.60613 -34.01484 -33.09472 -32.70212 -31.88504 -29.53850 -29.12256 -25.77208 -25.44435 -24.55878 -24.26927 -23.09259 -21.79694 -21.47322 -19.69003 -18.70504 -18.24216 -17.71224 -16.85449 -16.62677 -16.36678 -16.04605 -15.37889 -15.21653 -14.68199 -14.43146 -14.28779 -14.27416 -14.03551 -13.51239 -13.31359 -13.10305 -12.73638 -12.64173 -12.53923 -12.19182 -12.18160 -12.08547 -11.96989 -11.75699 -11.38440 -11.03627 -10.83306 -10.74973 -10.61491 -10.48377 -10.29465 -10.09372 -9.82886 -9.69585 -9.27155 -9.20413 -8.45122 -8.02003 -6.04327 -4.06149 0.10647 0.87173 2.30926 2.35046 2.68041 3.33735 3.37105 3.40566 3.42392 3.52718 3.70290 4.34851 4.40438 4.44548 4.65794 4.66696 4.69063 4.77394 4.83099 4.89480 5.01054 5.23852 5.24379 5.30721 5.37447 5.41049 5.47300 5.53763 5.64319 5.70880 5.94295 5.96725 6.08969 6.18000 6.21313 6.25589 6.48460 6.54843 7.10164 7.16449 7.59572 7.59631 7.72479 7.80209 8.05339 8.40039 9.00510 9.57718 11.06771 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012836 B = 0.003031 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.827398 B = 9235.612866 C =10968.057605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.064 3.936 3 O -0.360 6.360 4 C 0.518 3.482 5 O -0.477 6.477 6 C -0.272 4.272 7 C 0.240 3.760 8 N -0.554 5.554 9 C 0.387 3.613 10 C -0.092 4.092 11 N -0.575 5.575 12 C 0.430 3.570 13 O -0.252 6.252 14 C 0.038 3.962 15 C 0.002 3.998 16 N -0.457 5.457 17 C 0.161 3.839 18 C -0.507 4.507 19 H 0.064 0.936 20 C 0.054 3.946 21 N -0.899 5.899 22 Si 0.902 3.098 23 H -0.287 1.287 24 H -0.275 1.275 25 H -0.277 1.277 26 C 0.004 3.996 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.187 0.813 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.129 0.871 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.032 0.968 40 H 0.007 0.993 41 H 0.263 0.737 42 H 0.074 0.926 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.861 12.368 -5.427 26.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.010 4.010 3 O -0.278 6.278 4 C 0.360 3.640 5 O -0.363 6.363 6 C -0.279 4.279 7 C 0.074 3.926 8 N -0.274 5.274 9 C 0.122 3.878 10 C -0.150 4.150 11 N -0.306 5.306 12 C 0.243 3.757 13 O -0.151 6.151 14 C -0.018 4.018 15 C -0.128 4.128 16 N -0.181 5.181 17 C 0.035 3.965 18 C -0.546 4.546 19 H 0.082 0.918 20 C -0.147 4.147 21 N -0.538 5.538 22 Si 0.729 3.271 23 H -0.213 1.213 24 H -0.201 1.201 25 H -0.202 1.202 26 C -0.126 4.126 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.204 0.796 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.146 0.854 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.050 0.950 40 H 0.025 0.975 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -21.568 12.760 -5.480 25.652 hybrid contribution 0.002 -1.697 0.786 1.870 sum -21.565 11.063 -4.694 24.688 Atomic orbital electron populations 1.21810 0.92483 1.03097 1.03480 1.23054 0.95215 0.79664 1.03046 1.86472 1.23528 1.32845 1.84921 1.20282 0.80806 0.88813 0.74100 1.90965 1.59938 1.41512 1.43876 1.19938 0.91960 0.94049 1.21950 1.23559 1.00906 0.85301 0.82817 1.68395 1.13253 1.25521 1.20214 1.23347 0.85181 0.95411 0.83848 1.20729 1.02145 0.87628 1.04509 1.68136 1.40669 0.98272 1.23545 1.20149 0.87504 0.86315 0.81732 1.86599 1.18741 1.27473 1.82324 1.24862 0.74392 1.01990 1.00587 1.24115 0.92095 0.97895 0.98651 1.69060 1.15969 1.29952 1.03152 1.20299 0.95478 0.84315 0.96382 1.21036 1.12894 0.93113 1.27531 0.91800 1.25015 0.97836 0.95004 0.96851 1.69952 1.40963 0.97976 1.44957 0.86503 0.82467 0.77222 0.80890 1.21311 1.20089 1.20236 1.24219 0.91694 1.01197 0.95442 0.91428 0.91456 0.90122 0.90999 0.90941 0.79583 0.88792 0.88935 0.88889 0.85350 0.89574 0.90713 0.94979 0.97527 0.92783 0.90744 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.29 37.16 0.38 -0.48 16 2 C 0.06 0.57 6.20 37.16 0.23 0.80 16 3 O -0.36 -3.88 9.57 -40.62 -0.39 -4.27 16 4 C 0.52 7.15 7.90 34.46 0.27 7.42 16 5 O -0.48 -8.30 15.11 -26.37 -0.40 -8.70 16 6 C -0.27 -3.55 5.92 -104.58 -0.62 -4.17 16 7 C 0.24 2.44 10.90 -16.80 -0.18 2.26 16 8 N -0.55 -5.99 10.31 -10.42 -0.11 -6.10 16 9 C 0.39 4.34 7.64 -157.12 -1.20 3.14 16 10 C -0.09 -0.67 10.31 36.01 0.37 -0.30 16 11 N -0.57 -7.85 8.63 -10.45 -0.09 -7.95 16 12 C 0.43 6.51 7.55 -16.16 -0.12 6.38 16 13 O -0.25 -4.40 8.42 -38.64 -0.33 -4.73 16 14 C 0.04 0.66 4.54 -26.20 -0.12 0.54 16 15 C 0.00 0.03 7.52 -7.53 -0.06 -0.03 16 16 N -0.46 -10.28 6.32 -246.08 -1.55 -11.84 16 17 C 0.16 4.33 4.57 -4.98 -0.02 4.31 16 18 C -0.51 -14.72 9.39 -34.44 -0.32 -15.05 16 19 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 20 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 21 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 22 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 26 C 0.00 0.08 7.55 -7.54 -0.06 0.02 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.19 1.27 7.71 -52.49 -0.40 0.86 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.13 2.08 6.90 -51.92 -0.36 1.72 16 37 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.07 1.49 7.91 -51.93 -0.41 1.08 16 39 H 0.03 0.91 8.08 -51.92 -0.42 0.49 16 40 H 0.01 0.20 7.30 -51.93 -0.38 -0.18 16 41 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.07 1.59 7.42 -51.93 -0.39 1.20 16 43 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 371.07 15.07 5.59 5.59 Total: -1.00 -34.14 371.07 -9.23 -43.37 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -6.13 Total: -2.25 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -1.54 Total: 6.32 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: -1.02 Total: -52.40 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -1.11 Total: -17.69 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.14 -9.23 -43.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225932308.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.745 kcal (2) G-P(sol) polarization free energy of solvation -34.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds