Wall clock time and date at job start Tue Mar 31 2020 13:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45200 * 109.47331 * 2 1 4 4 C 1.34746 * 117.00229 * 180.02562 * 3 2 1 5 5 O 1.21504 * 119.99660 * 359.97438 * 4 3 2 6 6 C 1.47396 * 119.99967 * 180.02562 * 4 3 2 7 7 C 1.39866 * 120.98681 * 0.24253 * 6 4 3 8 8 N 1.32171 * 118.97126 * 180.29935 * 7 6 4 9 9 C 1.31952 * 121.14795 * 359.72139 * 8 7 6 10 10 C 1.50702 * 118.89058 * 180.02562 * 9 8 7 11 11 N 1.31717 * 122.20971 * 0.02562 * 9 8 7 12 12 C 1.32774 * 120.88233 * 359.97438 * 11 9 8 13 13 O 1.35265 * 120.61857 * 180.02562 * 12 11 9 14 14 C 1.42895 * 117.00402 * 359.97438 * 13 12 11 15 15 C 1.53514 * 114.17121 * 210.00327 * 14 13 12 16 16 N 1.47483 * 87.92777 * 220.32774 * 15 14 13 17 17 C 1.46903 * 110.99717 * 138.70421 * 16 15 14 18 18 C 1.50694 * 109.47066 * 169.99804 * 17 16 15 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46985 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47276 * 299.99832 * 22 20 18 25 25 H 1.48498 * 109.47150 * 60.00043 * 22 20 18 26 26 C 1.47480 * 87.83900 * 27.00973 * 16 15 14 27 27 H 1.08995 * 109.47087 * 300.00217 * 1 2 3 28 28 H 1.08999 * 109.47189 * 59.99978 * 1 2 3 29 29 H 1.09003 * 109.46914 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47277 * 240.00005 * 2 1 3 31 31 H 1.08999 * 109.47189 * 120.00021 * 2 1 3 32 32 H 1.07999 * 120.51284 * 0.02562 * 7 6 4 33 33 H 1.08993 * 109.47075 * 269.97394 * 10 9 8 34 34 H 1.08996 * 109.47500 * 29.98295 * 10 9 8 35 35 H 1.09001 * 109.46521 * 149.98323 * 10 9 8 36 36 H 1.09011 * 113.25486 * 342.95410 * 14 13 12 37 37 H 1.09000 * 113.47331 * 105.56452 * 15 14 13 38 38 H 1.08997 * 113.47627 * 335.09577 * 15 14 13 39 39 H 1.09007 * 109.47052 * 49.99488 * 17 16 15 40 40 H 1.09003 * 109.46808 * 290.00181 * 17 16 15 41 41 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 42 42 H 1.09004 * 113.47132 * 87.75237 * 26 16 15 43 43 H 1.09000 * 113.47538 * 218.21976 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3499 1.5455 -0.0005 5 8 4.0900 0.5819 -0.0005 6 6 3.9133 2.9075 0.0000 7 6 3.0805 4.0312 0.0061 8 7 3.6283 5.2341 0.0004 9 6 4.9389 5.3872 -0.0056 10 6 5.5089 6.7822 -0.0114 11 7 5.7655 4.3617 -0.0065 12 6 5.3061 3.1160 -0.0010 13 8 6.1598 2.0668 -0.0015 14 6 7.5568 2.3671 -0.0087 15 6 8.4232 1.3112 -0.7096 16 7 9.4165 1.4899 0.3658 17 6 9.9739 0.1979 0.7876 18 6 11.1488 0.4320 1.7017 19 1 11.4516 1.4398 1.9447 20 6 11.8381 -0.6405 2.2270 21 7 11.4697 -1.8677 1.9307 22 14 13.2950 -0.3502 3.3595 23 1 13.8584 -1.6564 3.7860 24 1 14.3353 0.4265 2.6386 25 1 12.8491 0.4099 4.5547 26 6 8.3068 1.8996 1.2465 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.0065 3.9178 0.0110 33 1 5.6425 7.1158 -1.0404 34 1 4.8246 7.4566 0.5034 35 1 6.4722 6.7831 0.4987 36 1 7.7751 3.3928 -0.3065 37 1 8.7827 1.6254 -1.6894 38 1 7.9720 0.3191 -0.7236 39 1 10.3014 -0.3603 -0.0896 40 1 9.2099 -0.3721 1.3164 41 1 11.9549 -2.6222 2.2999 42 1 7.8246 1.0644 1.7545 43 1 8.5677 2.7123 1.9244 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225932308.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:13 Heat of formation + Delta-G solvation = -55.370877 kcal Electronic energy + Delta-G solvation = -26664.932139 eV Core-core repulsion = 22711.614963 eV Total energy + Delta-G solvation = -3953.317176 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.73312 -41.39896 -41.08774 -39.01564 -37.65178 -35.11309 -34.92294 -33.88028 -32.54143 -31.29683 -30.07623 -27.55036 -27.05775 -25.58664 -25.37442 -23.86732 -23.56089 -22.49355 -21.24989 -19.92442 -19.26840 -18.81568 -18.48791 -17.82768 -17.59381 -17.15707 -16.99367 -16.53971 -16.08374 -15.91150 -15.71035 -15.10411 -14.93816 -14.83312 -14.44800 -14.27597 -14.06243 -13.85489 -13.62748 -13.39772 -13.30681 -13.16919 -12.93267 -12.92265 -12.76153 -12.54791 -12.49961 -12.26862 -12.02584 -11.80813 -11.56253 -11.54739 -11.36406 -11.28854 -10.68435 -10.64674 -10.34935 -9.91646 -8.27306 -6.38981 -0.83788 -0.11498 1.31689 1.37140 1.38276 1.42192 1.49685 1.52215 2.36419 2.47304 2.60740 2.85098 3.04334 3.14483 3.20106 3.37156 3.46675 3.85850 3.86271 4.00743 4.05371 4.08505 4.24614 4.31407 4.35709 4.47519 4.52054 4.64162 4.72871 4.74233 4.77490 4.82875 4.89907 4.95149 4.96930 5.11167 5.28200 5.36202 5.45507 5.56184 5.64344 5.89024 5.94670 6.26872 6.57995 6.74193 6.79322 7.30608 8.84274 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012836 B = 0.003031 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.827398 B = 9235.612866 C =10968.057605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.054 3.946 3 O -0.347 6.347 4 C 0.522 3.478 5 O -0.524 6.524 6 C -0.285 4.285 7 C 0.260 3.740 8 N -0.550 5.550 9 C 0.384 3.616 10 C -0.090 4.090 11 N -0.589 5.589 12 C 0.409 3.591 13 O -0.273 6.273 14 C 0.069 3.931 15 C -0.001 4.001 16 N -0.466 5.466 17 C 0.176 3.824 18 C -0.530 4.530 19 H 0.064 0.936 20 C 0.000 4.000 21 N -0.935 5.935 22 Si 0.976 3.024 23 H -0.280 1.280 24 H -0.265 1.265 25 H -0.267 1.267 26 C 0.000 4.000 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.224 0.776 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.147 0.853 37 H 0.110 0.890 38 H 0.059 0.941 39 H 0.007 0.993 40 H -0.023 1.023 41 H 0.267 0.733 42 H 0.053 0.947 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.122 14.945 -5.260 28.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.019 4.019 3 O -0.264 6.264 4 C 0.366 3.634 5 O -0.413 6.413 6 C -0.292 4.292 7 C 0.093 3.907 8 N -0.269 5.269 9 C 0.120 3.880 10 C -0.148 4.148 11 N -0.320 5.320 12 C 0.222 3.778 13 O -0.174 6.174 14 C 0.012 3.988 15 C -0.129 4.129 16 N -0.190 5.190 17 C 0.049 3.951 18 C -0.568 4.568 19 H 0.082 0.918 20 C -0.198 4.198 21 N -0.575 5.575 22 Si 0.800 3.200 23 H -0.206 1.206 24 H -0.190 1.190 25 H -0.192 1.192 26 C -0.129 4.129 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.116 0.884 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.240 0.760 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.114 0.886 36 H 0.164 0.836 37 H 0.128 0.872 38 H 0.077 0.923 39 H 0.025 0.975 40 H -0.005 1.005 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -22.876 15.392 -5.324 28.082 hybrid contribution 0.208 -2.429 0.696 2.536 sum -22.668 12.962 -4.628 26.519 Atomic orbital electron populations 1.21821 0.89487 1.04472 1.04189 1.23348 0.97447 0.78646 1.02462 1.86476 1.21717 1.34028 1.84140 1.20492 0.81401 0.88656 0.72845 1.90949 1.61120 1.42955 1.46317 1.20064 0.91446 0.94631 1.23092 1.24129 1.02088 0.84042 0.80397 1.68551 1.13022 1.25398 1.19935 1.24162 0.85343 0.96235 0.82258 1.20917 1.02496 0.85479 1.05908 1.68159 1.41466 0.98095 1.24315 1.20419 0.87909 0.86493 0.82986 1.86568 1.18450 1.29104 1.83254 1.24436 0.74911 1.01830 0.97589 1.24138 0.91775 0.98046 0.98991 1.68944 1.17887 1.27168 1.05007 1.19952 0.94527 0.85850 0.94724 1.21363 1.13773 0.93323 1.28317 0.91806 1.26014 1.00936 0.94527 0.98358 1.70088 1.42393 0.98990 1.46036 0.85334 0.78468 0.77518 0.78700 1.20558 1.18954 1.19184 1.24194 0.91390 1.00744 0.96587 0.90779 0.90607 0.88422 0.91522 0.91813 0.75964 0.86960 0.87061 0.88635 0.83557 0.87212 0.92298 0.97503 1.00513 0.92463 0.92904 0.88672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 10.29 71.98 0.74 -0.61 16 2 C 0.05 0.95 6.20 71.98 0.45 1.39 16 3 O -0.35 -7.16 9.57 -56.56 -0.54 -7.70 16 4 C 0.52 14.50 7.90 70.23 0.56 15.06 16 5 O -0.52 -19.11 15.11 26.62 0.40 -18.71 16 6 C -0.29 -7.25 5.92 -19.84 -0.12 -7.37 16 7 C 0.26 4.64 10.90 85.04 0.93 5.57 16 8 N -0.55 -10.34 10.31 -186.89 -1.93 -12.27 16 9 C 0.38 7.71 7.64 138.73 1.06 8.77 16 10 C -0.09 -1.04 10.31 71.24 0.73 -0.31 16 11 N -0.59 -15.35 8.63 -299.81 -2.59 -17.94 16 12 C 0.41 12.28 7.55 85.19 0.64 12.92 16 13 O -0.27 -9.82 8.42 -65.28 -0.55 -10.37 16 14 C 0.07 2.42 4.54 30.94 0.14 2.56 16 15 C 0.00 -0.02 7.52 83.58 0.63 0.61 16 16 N -0.47 -21.69 6.32 -932.85 -5.89 -27.58 16 17 C 0.18 9.99 4.57 85.55 0.39 10.38 16 18 C -0.53 -31.54 9.39 25.60 0.24 -31.30 16 19 H 0.06 3.72 7.81 -2.91 -0.02 3.69 16 20 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 21 N -0.94 -58.16 13.29 21.45 0.28 -57.87 16 22 Si 0.98 45.46 29.54 68.60 2.03 47.48 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 24 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 26 C 0.00 0.01 7.55 83.58 0.63 0.64 16 27 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.22 2.20 7.71 -2.91 -0.02 2.17 16 33 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.15 4.62 6.90 -2.38 -0.02 4.60 16 37 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 38 H 0.06 2.50 7.91 -2.39 -0.02 2.48 16 39 H 0.01 0.42 8.08 -2.38 -0.02 0.40 16 40 H -0.02 -1.40 7.30 -2.39 -0.02 -1.42 16 41 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 42 H 0.05 2.41 7.42 -2.39 -0.02 2.40 16 43 H 0.09 3.67 8.14 -2.39 -0.02 3.65 16 Total: -1.00 -76.65 371.07 -0.28 -76.92 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 1.02 Total: 9.27 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: 7.48 Total: 18.76 kcal Atomic # 7 Polarization: -105.53 SS G_CDS: -10.12 Total: -115.65 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -0.69 Total: -36.78 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -76.65 -0.28 -76.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225932308.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.554 kcal (2) G-P(sol) polarization free energy of solvation -76.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds