Wall clock time and date at job start Tue Mar 31 2020 13:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45200 * 109.47003 * 2 1 4 4 C 1.34222 * 117.00094 * 180.02562 * 3 2 1 5 5 O 1.20821 * 120.00135 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99985 * 179.97438 * 4 3 2 7 7 C 1.50700 * 109.46963 * 179.97438 * 6 4 3 8 8 C 1.38238 * 120.82698 * 264.99957 * 7 6 4 9 9 N 1.32486 * 119.17911 * 180.02562 * 8 7 6 10 10 C 1.31793 * 120.96168 * 359.97438 * 9 8 7 11 11 N 1.31768 * 121.81480 * 0.02764 * 10 9 8 12 12 C 1.32822 * 120.71569 * 359.65644 * 11 10 9 13 13 O 1.35520 * 120.50944 * 180.32675 * 12 11 10 14 14 C 1.42898 * 117.00002 * 0.29158 * 13 12 11 15 15 H 1.08995 * 110.64112 * 333.13386 * 14 13 12 16 16 C 1.55157 * 110.71751 * 209.99848 * 14 13 12 17 17 C 1.54909 * 101.58121 * 206.13477 * 16 14 13 18 18 N 1.47418 * 104.83273 * 37.00820 * 17 16 14 19 19 C 1.36940 * 125.65003 * 155.83830 * 18 17 16 20 20 H 1.08002 * 120.00096 * 180.02562 * 19 18 17 21 21 C 1.38813 * 119.99924 * 0.02656 * 19 18 17 22 22 N 1.31621 * 119.99699 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99896 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47352 * 89.99832 * 23 21 19 25 25 H 1.48504 * 109.46874 * 209.99482 * 23 21 19 26 26 H 1.48499 * 109.47342 * 329.99336 * 23 21 19 27 27 C 1.47021 * 108.70388 * 335.87254 * 18 17 16 28 28 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47050 * 299.99913 * 1 2 3 30 30 H 1.09001 * 109.46801 * 60.00026 * 1 2 3 31 31 H 1.08993 * 109.46955 * 120.00258 * 2 1 3 32 32 H 1.09000 * 109.47050 * 240.00087 * 2 1 3 33 33 H 1.08994 * 109.47313 * 299.99702 * 6 4 3 34 34 H 1.09006 * 109.46774 * 60.00058 * 6 4 3 35 35 H 1.08001 * 120.40622 * 359.97438 * 8 7 6 36 36 H 1.08003 * 119.09280 * 180.02562 * 10 9 8 37 37 H 1.09007 * 111.00442 * 324.20744 * 16 14 13 38 38 H 1.08994 * 111.00729 * 88.01718 * 16 14 13 39 39 H 1.08997 * 110.36766 * 155.84767 * 17 16 14 40 40 H 1.08996 * 110.36580 * 278.16867 * 17 16 14 41 41 H 0.97003 * 119.99527 * 180.02562 * 22 21 19 42 42 H 1.09005 * 109.88276 * 241.64175 * 27 18 17 43 43 H 1.08998 * 109.88520 * 120.47950 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9206 2.9375 -0.0012 7 6 5.4256 2.8587 -0.0010 8 6 6.1384 2.9255 1.1815 9 7 7.4607 2.8533 1.1436 10 6 8.0999 2.7190 -0.0011 11 7 7.4593 2.6514 -1.1506 12 6 6.1331 2.7103 -1.1927 13 8 5.4782 2.6337 -2.3767 14 6 6.2775 2.4826 -3.5515 15 1 7.2690 2.9090 -3.3992 16 6 5.5821 3.1341 -4.7761 17 6 6.1821 2.3154 -5.9463 18 7 6.2963 0.9409 -5.4258 19 6 6.3243 -0.1996 -6.1833 20 1 6.4103 -1.1639 -5.7045 21 6 6.2420 -0.1163 -7.5665 22 7 6.1366 1.0588 -8.1499 23 14 6.2794 -1.6721 -8.5996 24 1 4.8941 -2.1698 -8.7956 25 1 6.8899 -1.3747 -9.9203 26 1 7.0841 -2.7087 -7.9046 27 6 6.3743 0.9973 -3.9588 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 3.5844 3.4694 -0.8911 34 1 3.5850 3.4699 0.8889 35 1 5.6236 3.0359 2.1245 36 1 9.1784 2.6629 0.0031 37 1 4.5007 3.0071 -4.7245 38 1 5.8460 4.1882 -4.8602 39 1 5.5151 2.3406 -6.8080 40 1 7.1650 2.7022 -6.2151 41 1 6.0787 1.1169 -9.1164 42 1 7.3240 0.5817 -3.6218 43 1 5.5469 0.4384 -3.5218 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228316971.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:29 Heat of formation + Delta-G solvation = -44.572197 kcal Electronic energy + Delta-G solvation = -27348.592073 eV Core-core repulsion = 23395.743162 eV Total energy + Delta-G solvation = -3952.848911 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.43375 -40.34941 -38.82314 -36.82305 -36.39368 -34.04308 -33.03338 -32.17493 -31.83625 -29.34554 -28.57665 -27.40363 -24.94888 -24.27441 -23.80197 -22.92815 -21.05766 -20.49300 -20.29939 -18.61213 -17.93323 -17.86066 -16.92396 -16.67102 -16.49856 -15.76032 -15.33356 -14.79511 -14.71170 -14.43727 -14.34796 -14.24122 -13.61665 -13.42600 -13.34306 -13.00477 -12.94648 -12.68287 -12.48105 -11.97018 -11.87332 -11.77591 -11.60530 -11.04689 -10.96451 -10.78958 -10.76393 -10.66753 -10.63970 -10.46262 -10.17721 -10.04570 -9.84355 -9.62129 -9.35554 -8.92699 -8.68662 -6.88457 -5.68804 -3.10670 0.75387 1.15437 2.15160 2.57141 2.97029 3.39596 3.44457 3.46811 3.74141 3.99769 4.09556 4.39492 4.47406 4.56183 4.66352 4.74527 4.80644 4.84748 5.09564 5.16864 5.27363 5.32783 5.41206 5.46124 5.50913 5.53707 5.58849 5.67824 5.75739 5.77515 6.05731 6.25191 6.35024 6.39892 6.45058 6.60002 6.67115 6.86015 7.36916 7.42473 7.59072 7.67871 7.78537 8.02659 8.30280 9.18221 9.78206 10.41648 11.35765 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010716 B = 0.003891 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.374599 B = 7194.781381 C = 8935.359454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.359 6.359 4 C 0.464 3.536 5 O -0.498 6.498 6 C -0.052 4.052 7 C -0.215 4.215 8 C 0.187 3.813 9 N -0.549 5.549 10 C 0.339 3.661 11 N -0.569 5.569 12 C 0.392 3.608 13 O -0.287 6.287 14 C 0.073 3.927 15 H 0.098 0.902 16 C -0.140 4.140 17 C 0.154 3.846 18 N -0.601 5.601 19 C -0.222 4.222 20 H 0.078 0.922 21 C -0.010 4.010 22 N -0.924 5.924 23 Si 0.917 3.083 24 H -0.288 1.288 25 H -0.289 1.289 26 H -0.281 1.281 27 C 0.127 3.873 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.123 0.877 34 H 0.118 0.882 35 H 0.170 0.830 36 H 0.199 0.801 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.114 0.886 40 H 0.018 0.982 41 H 0.253 0.747 42 H 0.030 0.970 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.047 6.458 19.436 21.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.277 6.277 4 C 0.306 3.694 5 O -0.384 6.384 6 C -0.091 4.091 7 C -0.221 4.221 8 C 0.024 3.976 9 N -0.268 5.268 10 C 0.051 3.949 11 N -0.299 5.299 12 C 0.205 3.795 13 O -0.189 6.189 14 C 0.017 3.983 15 H 0.116 0.884 16 C -0.178 4.178 17 C 0.030 3.970 18 N -0.328 5.328 19 C -0.350 4.350 20 H 0.096 0.904 21 C -0.205 4.205 22 N -0.573 5.573 23 Si 0.747 3.253 24 H -0.215 1.215 25 H -0.215 1.215 26 H -0.207 1.207 27 C 0.001 3.999 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.141 0.859 34 H 0.136 0.864 35 H 0.187 0.813 36 H 0.216 0.784 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.132 0.868 40 H 0.036 0.964 41 H 0.064 0.936 42 H 0.048 0.952 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -6.193 6.012 19.059 20.922 hybrid contribution -0.526 -1.032 -0.633 1.320 sum -6.718 4.980 18.426 20.235 Atomic orbital electron populations 1.21805 0.92576 1.03008 1.03485 1.23041 0.95333 0.80067 1.02807 1.86465 1.24376 1.32596 1.84228 1.23536 0.80624 0.92557 0.72686 1.90711 1.60382 1.43001 1.44307 1.19911 0.90100 0.91912 1.07133 1.20098 0.96054 1.13066 0.92858 1.22883 0.89674 0.88351 0.96687 1.68442 1.09588 1.18321 1.30444 1.24762 1.00969 0.87558 0.81578 1.68186 1.08261 1.21188 1.32235 1.19970 0.87668 0.84988 0.86921 1.86294 1.35974 1.83867 1.12761 1.23796 0.95154 0.98628 0.80716 0.88422 1.23288 1.00909 0.99148 0.94478 1.21982 0.99015 0.81845 0.94192 1.44370 1.86510 1.03151 0.98775 1.19092 1.42757 0.84933 0.88196 0.90417 1.24783 1.02271 0.97204 0.96287 1.69752 1.57296 1.21290 1.08914 0.86035 0.77657 0.81907 0.79691 1.21536 1.21547 1.20686 1.21522 0.98687 0.92379 0.87319 0.90239 0.91600 0.91288 0.91338 0.90919 0.85948 0.86393 0.81284 0.78413 0.90981 0.91482 0.86814 0.96436 0.93620 0.95209 0.95202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.29 37.16 0.38 -0.75 16 2 C 0.06 0.64 6.19 37.16 0.23 0.87 16 3 O -0.36 -4.26 10.22 -39.24 -0.40 -4.66 16 4 C 0.46 6.09 7.95 36.01 0.29 6.38 16 5 O -0.50 -8.41 15.78 -18.75 -0.30 -8.71 16 6 C -0.05 -0.52 5.73 -29.03 -0.17 -0.69 16 7 C -0.22 -2.72 4.42 -104.20 -0.46 -3.18 16 8 C 0.19 2.07 10.98 -17.27 -0.19 1.88 16 9 N -0.55 -6.87 10.43 -14.64 -0.15 -7.03 16 10 C 0.34 4.37 12.28 -92.18 -1.13 3.24 16 11 N -0.57 -8.95 8.79 -14.64 -0.13 -9.08 16 12 C 0.39 6.22 7.50 -16.70 -0.13 6.10 16 13 O -0.29 -5.07 9.14 -18.25 -0.17 -5.23 16 14 C 0.07 1.42 3.26 -24.90 -0.08 1.34 16 15 H 0.10 1.86 6.98 -51.93 -0.36 1.50 16 16 C -0.14 -2.73 6.81 -24.58 -0.17 -2.90 16 17 C 0.15 3.79 5.89 -2.53 -0.01 3.78 16 18 N -0.60 -16.04 3.39 -170.08 -0.58 -16.62 16 19 C -0.22 -6.37 10.27 -15.06 -0.15 -6.52 16 20 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 21 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 22 N -0.92 -26.94 10.09 55.49 0.56 -26.38 16 23 Si 0.92 22.34 29.55 -169.99 -5.02 17.31 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 C 0.13 2.95 7.02 -3.07 -0.02 2.93 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.68 8.13 -51.93 -0.42 0.25 16 32 H 0.07 0.86 8.13 -51.93 -0.42 0.43 16 33 H 0.12 1.19 7.79 -51.93 -0.40 0.79 16 34 H 0.12 0.69 8.07 -51.93 -0.42 0.28 16 35 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.20 1.86 8.06 -52.48 -0.42 1.44 16 37 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.11 3.09 5.87 -51.93 -0.30 2.79 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.03 0.73 8.06 -51.93 -0.42 0.31 16 LS Contribution 365.10 15.07 5.50 5.50 Total: -1.00 -34.55 365.10 -8.50 -43.05 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -6.11 Total: -0.24 kcal Atomic # 6 Polarization: 13.80 SS G_CDS: -1.71 Total: 12.09 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: -0.30 Total: -59.11 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.86 Total: -18.60 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.55 -8.50 -43.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228316971.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.525 kcal (2) G-P(sol) polarization free energy of solvation -34.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds