Wall clock time and date at job start Tue Mar 31 2020 13:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45200 * 109.47003 * 2 1 4 4 C 1.34222 * 117.00094 * 180.02562 * 3 2 1 5 5 O 1.20821 * 120.00135 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99985 * 179.97438 * 4 3 2 7 7 C 1.50700 * 109.46963 * 179.97438 * 6 4 3 8 8 C 1.38238 * 120.82698 * 264.99957 * 7 6 4 9 9 N 1.32486 * 119.17911 * 180.02562 * 8 7 6 10 10 C 1.31793 * 120.96168 * 359.97438 * 9 8 7 11 11 N 1.31768 * 121.81480 * 0.02764 * 10 9 8 12 12 C 1.32822 * 120.71569 * 359.65644 * 11 10 9 13 13 O 1.35520 * 120.50944 * 180.32675 * 12 11 10 14 14 C 1.42898 * 117.00002 * 0.29158 * 13 12 11 15 15 H 1.08995 * 110.64112 * 333.13386 * 14 13 12 16 16 C 1.55157 * 110.71751 * 209.99848 * 14 13 12 17 17 C 1.54909 * 101.58121 * 206.13477 * 16 14 13 18 18 N 1.47418 * 104.83273 * 37.00820 * 17 16 14 19 19 C 1.36940 * 125.65003 * 155.83830 * 18 17 16 20 20 H 1.08002 * 120.00096 * 180.02562 * 19 18 17 21 21 C 1.38813 * 119.99924 * 0.02656 * 19 18 17 22 22 N 1.31621 * 119.99699 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99896 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47352 * 89.99832 * 23 21 19 25 25 H 1.48504 * 109.46874 * 209.99482 * 23 21 19 26 26 H 1.48499 * 109.47342 * 329.99336 * 23 21 19 27 27 C 1.47021 * 108.70388 * 335.87254 * 18 17 16 28 28 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47050 * 299.99913 * 1 2 3 30 30 H 1.09001 * 109.46801 * 60.00026 * 1 2 3 31 31 H 1.08993 * 109.46955 * 120.00258 * 2 1 3 32 32 H 1.09000 * 109.47050 * 240.00087 * 2 1 3 33 33 H 1.08994 * 109.47313 * 299.99702 * 6 4 3 34 34 H 1.09006 * 109.46774 * 60.00058 * 6 4 3 35 35 H 1.08001 * 120.40622 * 359.97438 * 8 7 6 36 36 H 1.08003 * 119.09280 * 180.02562 * 10 9 8 37 37 H 1.09007 * 111.00442 * 324.20744 * 16 14 13 38 38 H 1.08994 * 111.00729 * 88.01718 * 16 14 13 39 39 H 1.08997 * 110.36766 * 155.84767 * 17 16 14 40 40 H 1.08996 * 110.36580 * 278.16867 * 17 16 14 41 41 H 0.97003 * 119.99527 * 180.02562 * 22 21 19 42 42 H 1.09005 * 109.88276 * 241.64175 * 27 18 17 43 43 H 1.08998 * 109.88520 * 120.47950 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9206 2.9375 -0.0012 7 6 5.4256 2.8587 -0.0010 8 6 6.1384 2.9255 1.1815 9 7 7.4607 2.8533 1.1436 10 6 8.0999 2.7190 -0.0011 11 7 7.4593 2.6514 -1.1506 12 6 6.1331 2.7103 -1.1927 13 8 5.4782 2.6337 -2.3767 14 6 6.2775 2.4826 -3.5515 15 1 7.2690 2.9090 -3.3992 16 6 5.5821 3.1341 -4.7761 17 6 6.1821 2.3154 -5.9463 18 7 6.2963 0.9409 -5.4258 19 6 6.3243 -0.1996 -6.1833 20 1 6.4103 -1.1639 -5.7045 21 6 6.2420 -0.1163 -7.5665 22 7 6.1366 1.0588 -8.1499 23 14 6.2794 -1.6721 -8.5996 24 1 4.8941 -2.1698 -8.7956 25 1 6.8899 -1.3747 -9.9203 26 1 7.0841 -2.7087 -7.9046 27 6 6.3743 0.9973 -3.9588 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 3.5844 3.4694 -0.8911 34 1 3.5850 3.4699 0.8889 35 1 5.6236 3.0359 2.1245 36 1 9.1784 2.6629 0.0031 37 1 4.5007 3.0071 -4.7245 38 1 5.8460 4.1882 -4.8602 39 1 5.5151 2.3406 -6.8080 40 1 7.1650 2.7022 -6.2151 41 1 6.0787 1.1169 -9.1164 42 1 7.3240 0.5817 -3.6218 43 1 5.5469 0.4384 -3.5218 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228316971.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:28 Heat of formation + Delta-G solvation = -66.831653 kcal Electronic energy + Delta-G solvation = -27349.557315 eV Core-core repulsion = 23395.743162 eV Total energy + Delta-G solvation = -3953.814153 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.48434 -41.36549 -40.22738 -38.14042 -37.78772 -35.03914 -34.53222 -33.74694 -32.63054 -31.25926 -29.56061 -29.14461 -26.77390 -25.29577 -25.06208 -23.76065 -22.25425 -22.16808 -21.86719 -19.85937 -19.26345 -18.85946 -18.73423 -17.65072 -17.49372 -17.13514 -16.76274 -16.42369 -16.00570 -15.73799 -15.55624 -15.26814 -15.01903 -14.63586 -14.44792 -14.33451 -14.27231 -13.78149 -13.62971 -13.45552 -13.32777 -13.02024 -12.83108 -12.73201 -12.52824 -12.39543 -12.15145 -12.05680 -11.98979 -11.82120 -11.69468 -11.55613 -11.47430 -11.28357 -10.82580 -10.40604 -10.05195 -9.01685 -7.85527 -5.31826 -0.20701 0.10755 1.16231 1.43586 1.45845 1.54734 1.70552 1.71285 2.44355 2.74178 2.95191 3.23243 3.25207 3.49062 3.56836 3.62857 3.65744 3.83884 3.88210 3.95288 3.99041 4.07101 4.08275 4.32763 4.45386 4.48375 4.59186 4.62439 4.66989 4.78784 4.83138 4.85190 4.89362 4.91949 5.13856 5.27679 5.36288 5.46085 5.49808 5.67525 5.82234 6.04487 6.21298 6.70025 7.02011 7.02257 7.65346 8.28722 9.16696 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010716 B = 0.003891 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.374599 B = 7194.781381 C = 8935.359454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.053 3.947 3 O -0.356 6.356 4 C 0.463 3.537 5 O -0.544 6.544 6 C -0.048 4.048 7 C -0.213 4.213 8 C 0.193 3.807 9 N -0.552 5.552 10 C 0.332 3.668 11 N -0.597 5.597 12 C 0.359 3.641 13 O -0.293 6.293 14 C 0.094 3.906 15 H 0.102 0.898 16 C -0.122 4.122 17 C 0.156 3.844 18 N -0.621 5.621 19 C -0.251 4.251 20 H 0.073 0.927 21 C -0.057 4.057 22 N -0.944 5.944 23 Si 0.984 3.016 24 H -0.282 1.282 25 H -0.286 1.286 26 H -0.274 1.274 27 C 0.130 3.870 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.128 0.872 34 H 0.170 0.830 35 H 0.215 0.785 36 H 0.226 0.774 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.001 0.999 41 H 0.252 0.748 42 H 0.019 0.981 43 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.970 7.355 21.446 24.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.020 4.020 3 O -0.273 6.273 4 C 0.307 3.693 5 O -0.434 6.434 6 C -0.086 4.086 7 C -0.218 4.218 8 C 0.030 3.970 9 N -0.270 5.270 10 C 0.045 3.955 11 N -0.327 5.327 12 C 0.173 3.827 13 O -0.196 6.196 14 C 0.038 3.962 15 H 0.120 0.880 16 C -0.160 4.160 17 C 0.032 3.968 18 N -0.349 5.349 19 C -0.379 4.379 20 H 0.091 0.909 21 C -0.250 4.250 22 N -0.593 5.593 23 Si 0.811 3.189 24 H -0.209 1.209 25 H -0.212 1.212 26 H -0.199 1.199 27 C 0.004 3.996 28 H 0.114 0.886 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.146 0.854 34 H 0.187 0.813 35 H 0.231 0.769 36 H 0.242 0.758 37 H 0.092 0.908 38 H 0.120 0.880 39 H 0.104 0.896 40 H 0.019 0.981 41 H 0.062 0.938 42 H 0.037 0.963 43 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -7.127 6.933 21.109 23.333 hybrid contribution -0.232 -1.333 -1.133 1.765 sum -7.358 5.600 19.976 22.012 Atomic orbital electron populations 1.21814 0.90055 1.04285 1.03976 1.23234 0.97322 0.79483 1.01984 1.86479 1.23840 1.33271 1.83732 1.24182 0.80634 0.93258 0.71190 1.90699 1.61323 1.44709 1.46668 1.20115 0.88256 0.90364 1.09878 1.20416 0.97476 1.12010 0.91946 1.23647 0.89242 0.86283 0.97784 1.68541 1.10470 1.17969 1.29996 1.25337 1.02180 0.86952 0.81036 1.68133 1.08639 1.22109 1.33803 1.20385 0.88416 0.86935 0.87011 1.86249 1.35731 1.84751 1.12905 1.23322 0.95675 0.95431 0.81796 0.87990 1.23086 1.00585 1.00137 0.92231 1.21793 0.97741 0.81867 0.95436 1.44649 1.86526 1.03493 1.00201 1.19388 1.43679 0.85720 0.89111 0.90879 1.25633 1.01789 1.00439 0.97170 1.69981 1.57346 1.23024 1.08946 0.85008 0.77776 0.78312 0.77763 1.20869 1.21218 1.19923 1.21527 0.97250 0.95258 0.85603 0.88606 0.90197 0.91619 0.90903 0.93126 0.85371 0.81253 0.76857 0.75805 0.90810 0.88014 0.89564 0.98137 0.93817 0.96268 0.96979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 10.29 71.98 0.74 -1.19 16 2 C 0.05 1.09 6.19 71.98 0.45 1.54 16 3 O -0.36 -7.99 10.22 -51.34 -0.52 -8.52 16 4 C 0.46 11.58 7.95 71.24 0.57 12.15 16 5 O -0.54 -18.40 15.78 21.98 0.35 -18.06 16 6 C -0.05 -0.84 5.73 29.10 0.17 -0.67 16 7 C -0.21 -4.93 4.42 -19.59 -0.09 -5.02 16 8 C 0.19 3.67 10.98 84.59 0.93 4.60 16 9 N -0.55 -12.48 10.43 -200.24 -2.09 -14.57 16 10 C 0.33 8.11 12.28 180.89 2.22 10.33 16 11 N -0.60 -18.47 8.79 -312.89 -2.75 -21.22 16 12 C 0.36 11.12 7.50 84.82 0.64 11.76 16 13 O -0.29 -10.28 9.14 -88.23 -0.81 -11.09 16 14 C 0.09 3.70 3.26 31.78 0.10 3.80 16 15 H 0.10 3.90 6.98 -2.39 -0.02 3.89 16 16 C -0.12 -4.74 6.81 31.99 0.22 -4.53 16 17 C 0.16 7.90 5.89 86.86 0.51 8.41 16 18 N -0.62 -34.37 3.39 -692.02 -2.35 -36.72 16 19 C -0.25 -14.85 10.27 84.03 0.86 -13.99 16 20 H 0.07 4.25 7.83 -2.91 -0.02 4.23 16 21 C -0.06 -3.31 5.49 84.86 0.47 -2.85 16 22 N -0.94 -56.30 10.09 21.65 0.22 -56.08 16 23 Si 0.98 46.48 29.55 68.60 2.03 48.51 16 24 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 25 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 26 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 27 C 0.13 6.24 7.02 86.73 0.61 6.85 16 28 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 1.41 8.13 -2.39 -0.02 1.39 16 32 H 0.05 1.24 8.13 -2.39 -0.02 1.22 16 33 H 0.13 2.17 7.79 -2.39 -0.02 2.15 16 34 H 0.17 1.14 8.07 -2.38 -0.02 1.13 16 35 H 0.21 1.99 8.06 -2.91 -0.02 1.97 16 36 H 0.23 3.88 8.06 -2.91 -0.02 3.86 16 37 H 0.07 2.84 8.14 -2.38 -0.02 2.82 16 38 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 39 H 0.09 4.85 5.87 -2.39 -0.01 4.84 16 40 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 41 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 42 H 0.02 0.95 8.14 -2.38 -0.02 0.94 16 43 H 0.01 0.62 8.06 -2.39 -0.02 0.60 16 Total: -1.00 -78.09 365.10 3.48 -74.61 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 1.02 Total: 11.94 kcal Atomic # 6 Polarization: 22.81 SS G_CDS: 8.39 Total: 31.20 kcal Atomic # 7 Polarization: -121.62 SS G_CDS: -6.97 Total: -128.59 kcal Atomic # 8 Polarization: -36.68 SS G_CDS: -0.98 Total: -37.66 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -78.09 3.48 -74.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228316971.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.781 kcal (2) G-P(sol) polarization free energy of solvation -78.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds