Wall clock time and date at job start Tue Mar 31 2020 13:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 120.00197 * 2 1 4 4 C 1.52995 * 109.46770 * 263.88963 * 3 2 1 5 5 H 1.09006 * 112.78710 * 284.19183 * 4 3 2 6 6 C 1.53505 * 113.47791 * 153.37962 * 4 3 2 7 7 C 1.53507 * 83.58138 * 219.20624 * 6 4 3 8 8 N 1.47479 * 87.92957 * 26.02290 * 7 6 4 9 9 C 1.46906 * 111.00125 * 221.29834 * 8 7 6 10 10 C 1.50691 * 109.47030 * 293.54682 * 9 8 7 11 11 O 1.21298 * 120.00360 * 357.01183 * 10 9 8 12 12 N 1.34780 * 120.00212 * 177.28930 * 10 9 8 13 13 C 1.37098 * 120.00402 * 179.72610 * 12 10 9 14 14 H 1.08000 * 119.99563 * 359.97438 * 13 12 10 15 15 C 1.38950 * 120.00071 * 180.02562 * 13 12 10 16 16 N 1.31406 * 119.99812 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99759 * 359.97438 * 15 13 12 18 18 H 1.48494 * 109.46986 * 90.00625 * 17 15 13 19 19 H 1.48510 * 109.46666 * 210.00210 * 17 15 13 20 20 H 1.48491 * 109.47496 * 330.00220 * 17 15 13 21 21 C 1.34776 * 119.99925 * 179.97438 * 2 1 3 22 22 O 1.21699 * 119.99721 * 354.88120 * 21 2 1 23 23 C 1.46653 * 120.00001 * 174.88876 * 21 2 1 24 24 C 1.36551 * 125.98473 * 180.42507 * 23 21 2 25 25 C 1.40368 * 106.70353 * 179.97438 * 24 23 21 26 26 C 1.35127 * 107.11575 * 359.97438 * 25 24 23 27 27 O 1.33930 * 108.76882 * 359.76871 * 26 25 24 28 28 H 1.09001 * 109.46733 * 93.50465 * 1 2 3 29 29 H 1.08995 * 109.47434 * 213.50145 * 1 2 3 30 30 H 1.08995 * 109.47000 * 333.51088 * 1 2 3 31 31 H 1.08999 * 109.47193 * 143.88819 * 3 2 1 32 32 H 1.09000 * 109.46825 * 23.88300 * 3 2 1 33 33 H 1.09011 * 114.17310 * 105.55612 * 6 4 3 34 34 H 1.09004 * 114.34390 * 332.86774 * 6 4 3 35 35 H 1.08997 * 113.47778 * 271.26200 * 7 6 4 36 36 H 1.09000 * 113.48043 * 140.78650 * 7 6 4 37 37 H 1.08999 * 109.46716 * 173.54468 * 9 8 7 38 38 H 1.09000 * 109.47158 * 53.54922 * 9 8 7 39 39 H 0.97007 * 119.99520 * 359.72309 * 12 10 9 40 40 H 0.97005 * 119.99958 * 179.97438 * 16 15 13 41 41 H 1.07996 * 126.64830 * 359.97438 * 24 23 21 42 42 H 1.08003 * 126.43991 * 180.02562 * 25 24 23 43 43 H 1.07999 * 125.61295 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.5855 1.6335 -1.4343 5 1 3.4229 1.0442 -1.8080 6 6 2.7521 3.1431 -1.6576 7 6 2.0718 2.8449 -3.0010 8 7 1.4384 1.6773 -2.3603 9 6 1.4434 0.5159 -3.2598 10 6 0.5514 0.7927 -4.4424 11 8 -0.0735 1.8306 -4.5010 12 7 0.4435 -0.1155 -5.4324 13 6 -0.3724 0.1338 -6.5056 14 1 -0.9290 1.0579 -6.5575 15 6 -0.4839 -0.8027 -7.5259 16 7 -1.2656 -0.5635 -8.5548 17 14 0.4784 -2.4013 -7.4357 18 1 -0.3352 -3.4301 -6.7395 19 1 0.7947 -2.8668 -8.8100 20 1 1.7405 -2.1777 -6.6861 21 6 2.1389 -1.1672 0.0005 22 8 1.5339 -2.2190 0.0950 23 6 3.6010 -1.1698 -0.1126 24 6 4.4022 -2.2754 -0.1330 25 6 5.7226 -1.8146 -0.2532 26 6 5.6701 -0.4652 -0.3010 27 8 4.3897 -0.0807 -0.2214 28 1 -0.3633 -0.0628 -1.0258 29 1 -0.3634 -0.8569 0.5672 30 1 -0.3633 0.9197 0.4583 31 1 3.0982 1.1683 0.6057 32 1 1.5654 2.0532 0.4161 33 1 3.7884 3.4698 -1.7449 34 1 2.1601 3.7647 -0.9859 35 1 2.7721 2.5789 -3.7928 36 1 1.3599 3.6115 -3.3070 37 1 1.0761 -0.3597 -2.7246 38 1 2.4597 0.3296 -3.6070 39 1 0.9433 -0.9456 -5.3856 40 1 -1.3432 -1.2172 -9.2673 41 1 4.0820 -3.3048 -0.0690 42 1 6.6131 -2.4240 -0.2998 43 1 6.5204 0.1945 -0.3920 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230628164.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:38 Heat of formation + Delta-G solvation = 8.651295 kcal Electronic energy + Delta-G solvation = -28181.065201 eV Core-core repulsion = 24230.524234 eV Total energy + Delta-G solvation = -3950.540967 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.98554 -40.52103 -39.34130 -37.90189 -35.64590 -33.95414 -33.30255 -31.72227 -30.91448 -30.46221 -28.78230 -26.79559 -25.90761 -23.71885 -23.53079 -22.47372 -22.00793 -20.24419 -19.52000 -19.38080 -18.37240 -17.90664 -16.85689 -16.60722 -16.15547 -16.05289 -15.76703 -15.52234 -14.81402 -14.53794 -14.28078 -14.07130 -13.81720 -13.38893 -13.31261 -13.08477 -12.98537 -12.85749 -12.60423 -12.42833 -12.26574 -12.14369 -11.71309 -11.56459 -11.44418 -11.17733 -10.90285 -10.64069 -10.58135 -10.35385 -10.23079 -9.97150 -9.55746 -9.07491 -8.90494 -8.52629 -8.38284 -8.17236 -6.31044 -3.82180 0.84406 2.10482 2.42687 2.91444 3.03223 3.03864 3.09152 3.16250 3.72901 3.99585 4.11205 4.21148 4.46694 4.63980 4.65887 4.74954 4.83930 4.97325 5.19075 5.20583 5.28809 5.37274 5.39548 5.42520 5.49967 5.54289 5.58073 5.64980 5.69190 5.76597 5.80803 5.90463 6.02671 6.05535 6.08737 6.26594 6.28801 6.54583 6.60950 7.13765 7.19556 7.57965 7.89612 8.13868 8.59731 8.94867 9.42596 9.82601 10.82013 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012702 B = 0.004222 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.838209 B = 6629.695962 C = 7424.769187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.595 5.595 3 C 0.128 3.872 4 C 0.003 3.997 5 H 0.081 0.919 6 C -0.138 4.138 7 C 0.015 3.985 8 N -0.433 5.433 9 C 0.010 3.990 10 C 0.453 3.547 11 O -0.561 6.561 12 N -0.590 5.590 13 C -0.304 4.304 14 H 0.120 0.880 15 C 0.043 3.957 16 N -0.881 5.881 17 Si 0.877 3.123 18 H -0.269 1.269 19 H -0.276 1.276 20 H -0.271 1.271 21 C 0.595 3.405 22 O -0.522 6.522 23 C -0.074 4.074 24 C -0.122 4.122 25 C -0.224 4.224 26 C -0.016 4.016 27 O -0.156 6.156 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.050 0.950 39 H 0.370 0.630 40 H 0.273 0.727 41 H 0.159 0.841 42 H 0.155 0.845 43 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.268 1.427 19.912 25.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.325 5.325 3 C 0.004 3.996 4 C -0.108 4.108 5 H 0.099 0.901 6 C -0.177 4.177 7 C -0.114 4.114 8 N -0.156 5.156 9 C -0.122 4.122 10 C 0.238 3.762 11 O -0.442 6.442 12 N -0.230 5.230 13 C -0.433 4.433 14 H 0.137 0.863 15 C -0.160 4.160 16 N -0.521 5.521 17 Si 0.703 3.297 18 H -0.195 1.195 19 H -0.201 1.201 20 H -0.196 1.196 21 C 0.383 3.617 22 O -0.401 6.401 23 C -0.126 4.126 24 C -0.143 4.143 25 C -0.243 4.243 26 C -0.086 4.086 27 O -0.051 6.051 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.112 0.888 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.068 0.932 39 H 0.202 0.798 40 H 0.084 0.916 41 H 0.176 0.824 42 H 0.172 0.828 43 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 14.533 1.823 19.935 24.738 hybrid contribution 1.813 -1.781 -0.723 2.642 sum 16.346 0.042 19.213 25.225 Atomic orbital electron populations 1.21742 0.77406 1.02639 1.03255 1.47609 1.07822 1.05486 1.71623 1.21819 0.96825 0.85047 0.95869 1.24037 0.94321 0.97286 0.95181 0.90097 1.23210 1.01036 0.94711 0.98697 1.23542 0.97284 0.95523 0.95066 1.68790 1.33411 1.02831 1.10539 1.22485 0.98770 0.96074 0.94847 1.19558 0.86635 0.85792 0.84204 1.90559 1.48258 1.26385 1.79040 1.42233 1.42462 1.18008 1.20280 1.19418 1.21248 1.06701 0.95916 0.86259 1.25015 0.97247 0.98144 0.95580 1.69618 1.37282 1.35903 1.09270 0.86710 0.80218 0.84187 0.78544 1.19470 1.20092 1.19630 1.16681 0.83367 0.84191 0.77461 1.90886 1.67267 1.31030 1.50877 1.22100 0.91809 0.85280 1.13444 1.21986 0.92097 0.99694 1.00522 1.21853 0.98284 0.94900 1.09226 1.24474 0.85038 0.96300 1.02742 1.84334 1.16811 1.34074 1.69886 0.91345 0.90997 0.90698 0.89459 0.89116 0.90809 0.88829 0.91903 0.88772 0.89456 0.93227 0.79775 0.91605 0.82371 0.82762 0.77513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.13 10.39 59.85 0.62 1.75 16 2 N -0.59 -7.37 2.75 -183.14 -0.50 -7.88 16 3 C 0.13 1.29 5.16 -4.04 -0.02 1.26 16 4 C 0.00 0.03 2.79 -71.43 -0.20 -0.17 16 5 H 0.08 0.96 5.91 -51.93 -0.31 0.65 16 6 C -0.14 -1.40 7.99 -26.21 -0.21 -1.61 16 7 C 0.01 0.21 6.33 -7.54 -0.05 0.17 16 8 N -0.43 -6.73 5.74 -237.95 -1.37 -8.09 16 9 C 0.01 0.19 5.43 -4.98 -0.03 0.16 16 10 C 0.45 10.58 7.52 -10.99 -0.08 10.49 16 11 O -0.56 -15.05 14.89 5.54 0.08 -14.97 16 12 N -0.59 -14.61 5.09 -10.96 -0.06 -14.67 16 13 C -0.30 -8.77 10.16 -14.93 -0.15 -8.93 16 14 H 0.12 3.90 7.39 -52.49 -0.39 3.52 16 15 C 0.04 1.21 5.50 -17.47 -0.10 1.11 16 16 N -0.88 -26.08 13.96 55.50 0.77 -25.31 16 17 Si 0.88 20.06 27.74 -169.99 -4.71 15.35 16 18 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.27 -5.73 6.52 56.52 0.37 -5.36 16 21 C 0.60 8.37 7.60 -12.86 -0.10 8.27 16 22 O -0.52 -8.91 16.47 5.19 0.09 -8.83 16 23 C -0.07 -0.89 6.65 -36.80 -0.24 -1.13 16 24 C -0.12 -1.32 10.62 -39.39 -0.42 -1.74 16 25 C -0.22 -1.81 10.87 -39.89 -0.43 -2.24 16 26 C -0.02 -0.11 12.08 29.63 0.36 0.25 16 27 O -0.16 -1.48 5.49 5.01 0.03 -1.46 16 28 H 0.07 1.01 7.56 -51.93 -0.39 0.62 16 29 H 0.07 0.89 7.46 -51.93 -0.39 0.50 16 30 H 0.07 0.76 7.80 -51.93 -0.41 0.36 16 31 H 0.09 0.77 5.83 -51.93 -0.30 0.46 16 32 H 0.09 0.81 7.53 -51.93 -0.39 0.41 16 33 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 34 H 0.09 0.86 7.94 -51.93 -0.41 0.45 16 35 H 0.06 0.94 7.83 -51.93 -0.41 0.54 16 36 H 0.09 1.57 7.94 -51.93 -0.41 1.16 16 37 H 0.09 1.56 7.56 -51.93 -0.39 1.16 16 38 H 0.05 0.82 7.56 -51.93 -0.39 0.43 16 39 H 0.37 8.26 5.76 -40.82 -0.24 8.03 16 40 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.15 0.88 8.06 -52.48 -0.42 0.46 16 43 H 0.21 0.63 8.06 -52.49 -0.42 0.21 16 LS Contribution 356.67 15.07 5.37 5.37 Total: -1.00 -35.21 356.67 -7.03 -42.24 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -5.68 Total: 10.59 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: -1.05 Total: 7.65 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: -1.15 Total: -55.94 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: 0.20 Total: -25.25 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.71 Total: 15.35 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.21 -7.03 -42.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230628164.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.895 kcal (2) G-P(sol) polarization free energy of solvation -35.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds