Wall clock time and date at job start Tue Mar 31 2020 13:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 120.00197 * 2 1 4 4 C 1.52995 * 109.46770 * 263.88963 * 3 2 1 5 5 H 1.09006 * 112.78710 * 284.19183 * 4 3 2 6 6 C 1.53505 * 113.47791 * 153.37962 * 4 3 2 7 7 C 1.53507 * 83.58138 * 219.20624 * 6 4 3 8 8 N 1.47479 * 87.92957 * 26.02290 * 7 6 4 9 9 C 1.46906 * 111.00125 * 221.29834 * 8 7 6 10 10 C 1.50691 * 109.47030 * 293.54682 * 9 8 7 11 11 O 1.21298 * 120.00360 * 357.01183 * 10 9 8 12 12 N 1.34780 * 120.00212 * 177.28930 * 10 9 8 13 13 C 1.37098 * 120.00402 * 179.72610 * 12 10 9 14 14 H 1.08000 * 119.99563 * 359.97438 * 13 12 10 15 15 C 1.38950 * 120.00071 * 180.02562 * 13 12 10 16 16 N 1.31406 * 119.99812 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99759 * 359.97438 * 15 13 12 18 18 H 1.48494 * 109.46986 * 90.00625 * 17 15 13 19 19 H 1.48510 * 109.46666 * 210.00210 * 17 15 13 20 20 H 1.48491 * 109.47496 * 330.00220 * 17 15 13 21 21 C 1.34776 * 119.99925 * 179.97438 * 2 1 3 22 22 O 1.21699 * 119.99721 * 354.88120 * 21 2 1 23 23 C 1.46653 * 120.00001 * 174.88876 * 21 2 1 24 24 C 1.36551 * 125.98473 * 180.42507 * 23 21 2 25 25 C 1.40368 * 106.70353 * 179.97438 * 24 23 21 26 26 C 1.35127 * 107.11575 * 359.97438 * 25 24 23 27 27 O 1.33930 * 108.76882 * 359.76871 * 26 25 24 28 28 H 1.09001 * 109.46733 * 93.50465 * 1 2 3 29 29 H 1.08995 * 109.47434 * 213.50145 * 1 2 3 30 30 H 1.08995 * 109.47000 * 333.51088 * 1 2 3 31 31 H 1.08999 * 109.47193 * 143.88819 * 3 2 1 32 32 H 1.09000 * 109.46825 * 23.88300 * 3 2 1 33 33 H 1.09011 * 114.17310 * 105.55612 * 6 4 3 34 34 H 1.09004 * 114.34390 * 332.86774 * 6 4 3 35 35 H 1.08997 * 113.47778 * 271.26200 * 7 6 4 36 36 H 1.09000 * 113.48043 * 140.78650 * 7 6 4 37 37 H 1.08999 * 109.46716 * 173.54468 * 9 8 7 38 38 H 1.09000 * 109.47158 * 53.54922 * 9 8 7 39 39 H 0.97007 * 119.99520 * 359.72309 * 12 10 9 40 40 H 0.97005 * 119.99958 * 179.97438 * 16 15 13 41 41 H 1.07996 * 126.64830 * 359.97438 * 24 23 21 42 42 H 1.08003 * 126.43991 * 180.02562 * 25 24 23 43 43 H 1.07999 * 125.61295 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.5855 1.6335 -1.4343 5 1 3.4229 1.0442 -1.8080 6 6 2.7521 3.1431 -1.6576 7 6 2.0718 2.8449 -3.0010 8 7 1.4384 1.6773 -2.3603 9 6 1.4434 0.5159 -3.2598 10 6 0.5514 0.7927 -4.4424 11 8 -0.0735 1.8306 -4.5010 12 7 0.4435 -0.1155 -5.4324 13 6 -0.3724 0.1338 -6.5056 14 1 -0.9290 1.0579 -6.5575 15 6 -0.4839 -0.8027 -7.5259 16 7 -1.2656 -0.5635 -8.5548 17 14 0.4784 -2.4013 -7.4357 18 1 -0.3352 -3.4301 -6.7395 19 1 0.7947 -2.8668 -8.8100 20 1 1.7405 -2.1777 -6.6861 21 6 2.1389 -1.1672 0.0005 22 8 1.5339 -2.2190 0.0950 23 6 3.6010 -1.1698 -0.1126 24 6 4.4022 -2.2754 -0.1330 25 6 5.7226 -1.8146 -0.2532 26 6 5.6701 -0.4652 -0.3010 27 8 4.3897 -0.0807 -0.2214 28 1 -0.3633 -0.0628 -1.0258 29 1 -0.3634 -0.8569 0.5672 30 1 -0.3633 0.9197 0.4583 31 1 3.0982 1.1683 0.6057 32 1 1.5654 2.0532 0.4161 33 1 3.7884 3.4698 -1.7449 34 1 2.1601 3.7647 -0.9859 35 1 2.7721 2.5789 -3.7928 36 1 1.3599 3.6115 -3.3070 37 1 1.0761 -0.3597 -2.7246 38 1 2.4597 0.3296 -3.6070 39 1 0.9433 -0.9456 -5.3856 40 1 -1.3432 -1.2172 -9.2673 41 1 4.0820 -3.3048 -0.0690 42 1 6.6131 -2.4240 -0.2998 43 1 6.5204 0.1945 -0.3920 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230628164.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:37 Heat of formation + Delta-G solvation = -19.466817 kcal Electronic energy + Delta-G solvation = -28182.284494 eV Core-core repulsion = 24230.524234 eV Total energy + Delta-G solvation = -3951.760260 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.67081 -41.65898 -40.47117 -39.67445 -36.66728 -36.03315 -33.98713 -33.83884 -32.23825 -31.27071 -29.74037 -27.72245 -27.63876 -25.21663 -24.68454 -23.26810 -22.66827 -21.37505 -21.11269 -20.45167 -20.32525 -18.80173 -17.86415 -17.64655 -17.40477 -17.17225 -16.88067 -16.81870 -16.48736 -15.95576 -15.38594 -15.34056 -15.13967 -14.82415 -14.44190 -14.32151 -14.03168 -13.97654 -13.84560 -13.69162 -13.52886 -13.24792 -13.04351 -12.88406 -12.49489 -12.43992 -12.38070 -12.06177 -11.95805 -11.76061 -11.57533 -11.32353 -10.98060 -10.51425 -10.31371 -9.96785 -9.75961 -9.44953 -8.47605 -6.07945 0.06045 1.22681 1.28232 1.35876 1.47155 1.64501 1.84629 2.07571 2.13268 2.15388 2.64170 3.07130 3.16504 3.44718 3.60135 3.86184 3.99401 4.00986 4.10944 4.16997 4.21258 4.25404 4.33187 4.42124 4.46651 4.53424 4.63237 4.64359 4.81489 4.89437 4.95069 4.97155 5.02130 5.09362 5.26870 5.35587 5.38721 5.46831 5.47428 5.86121 5.90889 6.03138 6.27498 6.51809 6.80413 6.91951 7.30968 7.85929 8.69845 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012702 B = 0.004222 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.838209 B = 6629.695962 C = 7424.769187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.594 5.594 3 C 0.128 3.872 4 C 0.010 3.990 5 H 0.086 0.914 6 C -0.108 4.108 7 C 0.001 3.999 8 N -0.455 5.455 9 C 0.030 3.970 10 C 0.453 3.547 11 O -0.601 6.601 12 N -0.593 5.593 13 C -0.327 4.327 14 H 0.060 0.940 15 C -0.008 4.008 16 N -0.929 5.929 17 Si 0.956 3.044 18 H -0.261 1.261 19 H -0.267 1.267 20 H -0.239 1.239 21 C 0.589 3.411 22 O -0.568 6.568 23 C -0.105 4.105 24 C -0.129 4.129 25 C -0.235 4.235 26 C 0.009 3.991 27 O -0.155 6.155 28 H 0.039 0.961 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.385 0.615 40 H 0.280 0.720 41 H 0.150 0.850 42 H 0.178 0.822 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.426 1.035 21.896 29.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.323 5.323 3 C 0.005 3.995 4 C -0.100 4.100 5 H 0.104 0.896 6 C -0.146 4.146 7 C -0.128 4.128 8 N -0.178 5.178 9 C -0.102 4.102 10 C 0.240 3.760 11 O -0.484 6.484 12 N -0.235 5.235 13 C -0.456 4.456 14 H 0.078 0.922 15 C -0.207 4.207 16 N -0.569 5.569 17 Si 0.777 3.223 18 H -0.185 1.185 19 H -0.192 1.192 20 H -0.163 1.163 21 C 0.379 3.621 22 O -0.450 6.450 23 C -0.156 4.156 24 C -0.150 4.150 25 C -0.254 4.254 26 C -0.060 4.060 27 O -0.051 6.051 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.116 0.884 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.220 0.780 40 H 0.090 0.910 41 H 0.168 0.832 42 H 0.195 0.805 43 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 18.710 1.468 21.944 28.875 hybrid contribution 0.528 -1.519 -1.328 2.085 sum 19.238 -0.050 20.616 28.198 Atomic orbital electron populations 1.21665 0.77993 1.03597 1.01511 1.47714 1.07698 1.06067 1.70845 1.22018 0.97872 0.84279 0.95287 1.24086 0.92657 0.98513 0.94772 0.89630 1.23152 1.02567 0.93795 0.95062 1.23582 0.96984 0.94672 0.97555 1.68821 1.36135 1.02023 1.10846 1.22283 0.98051 0.97270 0.92617 1.20659 0.85958 0.84543 0.84819 1.90537 1.49787 1.28084 1.80013 1.42105 1.42507 1.19089 1.19765 1.19001 1.22761 1.05472 0.98400 0.92223 1.25986 0.98048 1.02408 0.94286 1.69779 1.38953 1.37888 1.10319 0.85485 0.79581 0.77818 0.79443 1.18528 1.19169 1.16282 1.17032 0.84474 0.83880 0.76715 1.90845 1.68541 1.32512 1.53142 1.21649 0.90967 0.86330 1.16687 1.22209 0.93642 0.99369 0.99756 1.22160 0.97744 0.95835 1.09666 1.25422 0.84851 0.96749 0.99005 1.84298 1.17646 1.33210 1.69947 0.94193 0.91593 0.88400 0.87328 0.87530 0.87526 0.87429 0.92488 0.91938 0.89325 0.91084 0.78011 0.90997 0.83187 0.80453 0.72920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.34 10.39 127.77 1.33 3.67 16 2 N -0.59 -13.98 2.75 -851.54 -2.34 -16.33 16 3 C 0.13 2.17 5.16 86.38 0.45 2.61 16 4 C 0.01 0.19 2.79 42.19 0.12 0.31 16 5 H 0.09 1.68 5.91 -2.38 -0.01 1.66 16 6 C -0.11 -1.77 7.99 30.93 0.25 -1.53 16 7 C 0.00 0.03 6.33 83.58 0.53 0.56 16 8 N -0.46 -13.64 5.74 -906.74 -5.21 -18.85 16 9 C 0.03 1.04 5.43 85.55 0.46 1.51 16 10 C 0.45 21.69 7.52 87.65 0.66 22.35 16 11 O -0.60 -33.90 14.89 -3.09 -0.05 -33.94 16 12 N -0.59 -29.88 5.09 -306.98 -1.56 -31.44 16 13 C -0.33 -19.79 10.16 84.04 0.85 -18.93 16 14 H 0.06 4.24 7.39 -2.91 -0.02 4.21 16 15 C -0.01 -0.45 5.50 84.93 0.47 0.01 16 16 N -0.93 -56.90 13.96 21.66 0.30 -56.60 16 17 Si 0.96 40.94 27.74 68.60 1.90 42.84 16 18 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 19 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 20 H -0.24 -8.94 6.52 99.48 0.65 -8.29 16 21 C 0.59 16.21 7.60 86.44 0.66 16.86 16 22 O -0.57 -19.87 16.47 -4.35 -0.07 -19.94 16 23 C -0.10 -2.29 6.65 24.07 0.16 -2.13 16 24 C -0.13 -2.56 10.62 22.39 0.24 -2.32 16 25 C -0.24 -2.92 10.87 22.07 0.24 -2.68 16 26 C 0.01 0.08 12.08 67.10 0.81 0.89 16 27 O -0.16 -2.33 5.49 -4.98 -0.03 -2.36 16 28 H 0.04 1.21 7.56 -2.39 -0.02 1.19 16 29 H 0.07 1.69 7.46 -2.39 -0.02 1.67 16 30 H 0.10 1.90 7.80 -2.39 -0.02 1.88 16 31 H 0.11 1.45 5.83 -2.39 -0.01 1.44 16 32 H 0.11 1.50 7.53 -2.39 -0.02 1.48 16 33 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.11 1.53 7.94 -2.38 -0.02 1.51 16 35 H 0.06 1.65 7.83 -2.39 -0.02 1.63 16 36 H 0.06 2.14 7.94 -2.39 -0.02 2.12 16 37 H 0.09 3.13 7.56 -2.39 -0.02 3.11 16 38 H 0.07 2.19 7.56 -2.39 -0.02 2.17 16 39 H 0.39 16.80 5.76 -92.70 -0.53 16.26 16 40 H 0.28 15.67 8.31 -92.70 -0.77 14.90 16 41 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 42 H 0.18 1.28 8.06 -2.91 -0.02 1.25 16 43 H 0.26 -0.25 8.06 -2.91 -0.02 -0.27 16 Total: -1.00 -84.38 356.67 0.62 -83.76 By element: Atomic # 1 Polarization: 31.21 SS G_CDS: 0.45 Total: 31.66 kcal Atomic # 6 Polarization: 13.98 SS G_CDS: 7.22 Total: 21.20 kcal Atomic # 7 Polarization: -114.41 SS G_CDS: -8.81 Total: -123.22 kcal Atomic # 8 Polarization: -56.10 SS G_CDS: -0.14 Total: -56.24 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 1.90 Total: 42.84 kcal Total: -84.38 0.62 -83.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230628164.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.295 kcal (2) G-P(sol) polarization free energy of solvation -84.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds