Wall clock time and date at job start Tue Mar 31 2020 13:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46501 * 119.99749 * 2 1 4 4 C 1.52997 * 109.47150 * 270.00043 * 3 2 1 5 5 H 1.08996 * 112.78653 * 75.81163 * 4 3 2 6 6 C 1.53515 * 113.47627 * 206.62090 * 4 3 2 7 7 C 1.53513 * 83.57465 * 140.79220 * 6 4 3 8 8 N 1.47477 * 113.47726 * 305.00050 * 4 3 2 9 9 C 1.46899 * 111.00086 * 106.52833 * 8 4 3 10 10 C 1.50705 * 109.47237 * 187.49614 * 9 8 4 11 11 O 1.21290 * 119.99852 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99675 * 179.97438 * 10 9 8 13 13 C 1.37101 * 119.99576 * 180.02562 * 12 10 9 14 14 H 1.08001 * 120.00097 * 0.02562 * 13 12 10 15 15 C 1.38955 * 120.00026 * 180.02562 * 13 12 10 16 16 N 1.31414 * 119.99488 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00213 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46995 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47116 * 119.99847 * 17 15 13 20 20 H 1.48498 * 109.47119 * 239.99852 * 17 15 13 21 21 C 1.34779 * 120.00335 * 180.02562 * 2 1 3 22 22 O 1.21604 * 120.00084 * 179.58159 * 21 2 1 23 23 C 1.47381 * 119.99553 * 359.57646 * 21 2 1 24 24 C 1.47017 * 127.19207 * 9.85509 * 23 21 2 25 25 C 1.34179 * 105.95114 * 179.82624 * 24 23 21 26 26 O 1.34213 * 109.12422 * 0.43488 * 25 24 23 27 27 C 1.33651 * 110.91094 * 359.70984 * 26 25 24 28 28 H 1.09002 * 109.46817 * 96.62335 * 1 2 3 29 29 H 1.09001 * 109.46902 * 216.62378 * 1 2 3 30 30 H 1.09000 * 109.47101 * 336.61988 * 1 2 3 31 31 H 1.09007 * 109.47141 * 150.00188 * 3 2 1 32 32 H 1.09002 * 109.47290 * 30.00442 * 3 2 1 33 33 H 1.09007 * 114.17143 * 27.14353 * 6 4 3 34 34 H 1.09001 * 114.17187 * 254.43723 * 6 4 3 35 35 H 1.09005 * 113.47443 * 219.20898 * 7 6 4 36 36 H 1.09001 * 113.47997 * 88.74569 * 7 6 4 37 37 H 1.09000 * 109.46735 * 67.49835 * 9 8 4 38 38 H 1.08993 * 109.47050 * 307.49881 * 9 8 4 39 39 H 0.96994 * 120.00552 * 0.02562 * 12 10 9 40 40 H 0.97002 * 119.99735 * 180.02562 * 16 15 13 41 41 H 1.08001 * 127.02600 * 359.97438 * 24 23 21 42 42 H 1.08004 * 125.43953 * 180.13922 * 25 24 23 43 43 H 1.07999 * 125.80377 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 1 1.5630 2.1183 -1.9226 6 6 3.6942 2.5994 -1.5994 7 6 3.8977 1.7908 -2.8884 8 7 3.1443 0.6926 -2.2550 9 6 2.2219 0.0666 -3.2117 10 6 2.9112 -1.0878 -3.8924 11 8 4.0579 -1.3624 -3.6081 12 7 2.2531 -1.8157 -4.8162 13 6 2.8800 -2.8662 -5.4350 14 1 3.9010 -3.1108 -5.1819 15 6 2.2017 -3.6164 -6.3880 16 7 0.9595 -3.3185 -6.6963 17 14 3.0556 -5.0483 -7.2306 18 1 4.4408 -5.1741 -6.7103 19 1 2.3076 -6.3015 -6.9565 20 1 3.0975 -4.8071 -8.6953 21 6 2.1390 -1.1672 -0.0005 22 8 3.3550 -1.1671 -0.0082 23 6 1.4021 -2.4435 0.0083 24 6 -0.0428 -2.6368 -0.1822 25 6 -0.2522 -3.9594 -0.0972 26 8 0.9173 -4.5759 0.1340 27 6 1.9174 -3.6918 0.2009 28 1 -0.3633 -0.1185 -1.0208 29 1 -0.3633 -0.8248 0.6131 30 1 -0.3633 0.9433 0.4078 31 1 3.1500 1.1385 0.5138 32 1 1.6084 2.0284 0.5139 33 1 4.4607 2.4331 -0.8425 34 1 3.4706 3.6534 -1.7644 35 1 4.9409 1.5443 -3.0862 36 1 3.3939 2.2201 -3.7545 37 1 1.9197 0.8008 -3.9586 38 1 1.3411 -0.2969 -2.6826 39 1 1.3360 -1.5963 -5.0434 40 1 0.4859 -3.8424 -7.3612 41 1 -0.7839 -1.8710 -0.3575 42 1 -1.2099 -4.4493 -0.1943 43 1 2.9568 -3.9259 0.3777 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230753700.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:41 Heat of formation + Delta-G solvation = 17.501229 kcal Electronic energy + Delta-G solvation = -28413.366357 eV Core-core repulsion = 24463.209152 eV Total energy + Delta-G solvation = -3950.157205 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.38354 -40.34688 -38.79345 -37.57652 -35.29726 -33.77988 -32.86745 -31.22800 -30.52758 -29.63554 -28.82869 -26.63964 -25.67243 -24.05726 -23.61061 -22.07092 -21.38084 -19.50771 -19.33216 -19.12160 -17.79229 -17.41343 -16.31285 -16.16035 -16.05734 -15.67542 -15.64228 -15.33374 -14.54529 -14.33632 -14.31950 -13.83441 -13.67837 -13.47273 -13.32148 -12.94717 -12.84950 -12.55018 -12.26919 -12.16858 -11.64707 -11.54493 -11.46824 -11.37774 -11.14034 -10.96875 -10.72810 -10.36832 -10.28037 -10.12641 -9.65571 -9.49623 -9.40213 -8.75047 -8.60653 -8.27004 -8.00662 -7.84161 -6.32404 -3.71890 1.66214 2.19742 3.03458 3.21705 3.21835 3.31093 3.39528 3.70938 4.04408 4.12689 4.33185 4.60394 4.68724 4.85100 4.90878 5.06967 5.09612 5.16104 5.19725 5.30805 5.33187 5.41755 5.51169 5.54669 5.59170 5.61534 5.72467 5.76727 5.81467 5.87781 5.99050 6.12241 6.14704 6.33667 6.35931 6.42220 6.64062 6.82229 7.12021 7.40557 7.62055 7.64289 8.17401 8.59988 8.74403 9.29841 9.66647 10.21099 10.86136 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010101 B = 0.005444 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2771.335034 B = 5142.127056 C = 6999.586259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.613 5.613 3 C 0.140 3.860 4 C 0.000 4.000 5 H 0.072 0.928 6 C -0.135 4.135 7 C 0.002 3.998 8 N -0.412 5.412 9 C 0.013 3.987 10 C 0.452 3.548 11 O -0.565 6.565 12 N -0.572 5.572 13 C -0.291 4.291 14 H 0.101 0.899 15 C 0.020 3.980 16 N -0.907 5.907 17 Si 0.926 3.074 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.590 3.410 22 O -0.502 6.502 23 C -0.235 4.235 24 C -0.209 4.209 25 C -0.039 4.039 26 O -0.177 6.177 27 C 0.051 3.949 28 H 0.053 0.947 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.062 0.938 37 H 0.051 0.949 38 H 0.079 0.921 39 H 0.389 0.611 40 H 0.268 0.732 41 H 0.169 0.831 42 H 0.204 0.796 43 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.359 8.859 14.762 18.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.347 5.347 3 C 0.017 3.983 4 C -0.111 4.111 5 H 0.090 0.910 6 C -0.173 4.173 7 C -0.127 4.127 8 N -0.134 5.134 9 C -0.120 4.120 10 C 0.237 3.763 11 O -0.446 6.446 12 N -0.210 5.210 13 C -0.420 4.420 14 H 0.119 0.881 15 C -0.181 4.181 16 N -0.549 5.549 17 Si 0.753 3.247 18 H -0.193 1.193 19 H -0.208 1.208 20 H -0.209 1.209 21 C 0.379 3.621 22 O -0.376 6.376 23 C -0.239 4.239 24 C -0.228 4.228 25 C -0.105 4.105 26 O -0.072 6.072 27 C -0.020 4.020 28 H 0.072 0.928 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.112 0.888 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.098 0.902 39 H 0.221 0.779 40 H 0.078 0.922 41 H 0.186 0.814 42 H 0.221 0.779 43 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -5.668 7.664 15.156 17.905 hybrid contribution -1.162 0.202 -1.493 1.902 sum -6.830 7.866 13.664 17.182 Atomic orbital electron populations 1.22414 0.80567 1.03167 1.01704 1.47392 1.06180 1.05733 1.75420 1.21417 0.97813 0.84021 0.95096 1.23907 0.96750 0.93778 0.96660 0.91027 1.23146 0.97588 0.97560 0.99009 1.23738 1.01821 0.91654 0.95507 1.68931 1.14566 1.16200 1.13668 1.22471 0.96345 0.97705 0.95453 1.19664 0.87906 0.85585 0.83192 1.90544 1.17916 1.70909 1.65255 1.41851 1.14866 1.28589 1.35731 1.19724 0.99100 1.05936 1.17268 0.88097 1.25201 0.95768 0.99371 0.97756 1.69625 1.10187 1.41193 1.33911 0.85848 0.79503 0.80581 0.78736 1.19269 1.20831 1.20858 1.17108 0.86511 0.82194 0.76337 1.90852 1.12698 1.86652 1.47398 1.21450 0.93917 0.94727 1.13855 1.23524 0.95160 0.96821 1.07256 1.23939 0.88621 0.92457 1.05464 1.83808 1.15802 1.38135 1.69445 1.24365 0.92841 0.86336 0.98410 0.92834 0.89592 0.91486 0.89289 0.90702 0.88755 0.90986 0.89497 0.91996 0.93122 0.90234 0.77855 0.92181 0.81396 0.77929 0.76880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.62 8.77 59.85 0.53 1.14 16 2 N -0.61 -8.30 2.61 -182.86 -0.48 -8.77 16 3 C 0.14 1.71 5.62 -4.04 -0.02 1.68 16 4 C 0.00 0.00 3.36 -71.44 -0.24 -0.24 16 5 H 0.07 0.85 7.91 -51.93 -0.41 0.44 16 6 C -0.13 -1.61 8.00 -26.20 -0.21 -1.82 16 7 C 0.00 0.03 7.69 -7.55 -0.06 -0.03 16 8 N -0.41 -7.54 4.40 -237.95 -1.05 -8.59 16 9 C 0.01 0.25 5.26 -4.97 -0.03 0.22 16 10 C 0.45 11.64 7.83 -10.98 -0.09 11.56 16 11 O -0.56 -16.85 16.01 5.55 0.09 -16.76 16 12 N -0.57 -15.43 5.29 -10.96 -0.06 -15.49 16 13 C -0.29 -8.53 9.68 -14.93 -0.14 -8.67 16 14 H 0.10 3.14 7.16 -52.49 -0.38 2.77 16 15 C 0.02 0.54 5.50 -17.47 -0.10 0.45 16 16 N -0.91 -25.47 13.05 55.50 0.72 -24.75 16 17 Si 0.93 21.95 29.55 -169.99 -5.02 16.93 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.59 10.31 7.16 -12.54 -0.09 10.22 16 22 O -0.50 -10.81 15.92 5.27 0.08 -10.73 16 23 C -0.24 -3.77 6.08 -103.28 -0.63 -4.40 16 24 C -0.21 -2.66 8.87 -37.46 -0.33 -2.99 16 25 C -0.04 -0.47 12.03 29.30 0.35 -0.11 16 26 O -0.18 -2.55 10.52 7.66 0.08 -2.47 16 27 C 0.05 0.79 11.92 30.08 0.36 1.15 16 28 H 0.05 0.53 7.62 -51.93 -0.40 0.13 16 29 H 0.09 0.76 4.83 -51.93 -0.25 0.51 16 30 H 0.07 0.46 7.82 -51.93 -0.41 0.06 16 31 H 0.09 1.24 7.16 -51.92 -0.37 0.87 16 32 H 0.07 0.65 7.85 -51.93 -0.41 0.24 16 33 H 0.09 1.15 7.94 -51.92 -0.41 0.74 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 36 H 0.06 0.91 7.44 -51.93 -0.39 0.53 16 37 H 0.05 0.91 7.35 -51.93 -0.38 0.52 16 38 H 0.08 1.50 7.85 -51.93 -0.41 1.09 16 39 H 0.39 10.03 7.90 -40.82 -0.32 9.71 16 40 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.17 1.65 4.89 -52.49 -0.26 1.40 16 42 H 0.20 1.60 8.06 -52.48 -0.42 1.18 16 43 H 0.21 2.98 8.06 -52.49 -0.42 2.56 16 LS Contribution 360.88 15.07 5.44 5.44 Total: -1.00 -37.98 360.88 -6.50 -44.48 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -5.61 Total: 12.55 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: -0.70 Total: 8.16 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: -0.86 Total: -57.59 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: 0.25 Total: -29.96 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -37.98 -6.50 -44.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230753700.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.976 kcal (2) G-P(sol) polarization free energy of solvation -37.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds