Wall clock time and date at job start Tue Mar 31 2020 13:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46501 * 119.99749 * 2 1 4 4 C 1.52997 * 109.47150 * 270.00043 * 3 2 1 5 5 H 1.08996 * 112.78653 * 75.81163 * 4 3 2 6 6 C 1.53515 * 113.47627 * 206.62090 * 4 3 2 7 7 C 1.53513 * 83.57465 * 140.79220 * 6 4 3 8 8 N 1.47477 * 113.47726 * 305.00050 * 4 3 2 9 9 C 1.46899 * 111.00086 * 106.52833 * 8 4 3 10 10 C 1.50705 * 109.47237 * 187.49614 * 9 8 4 11 11 O 1.21290 * 119.99852 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99675 * 179.97438 * 10 9 8 13 13 C 1.37101 * 119.99576 * 180.02562 * 12 10 9 14 14 H 1.08001 * 120.00097 * 0.02562 * 13 12 10 15 15 C 1.38955 * 120.00026 * 180.02562 * 13 12 10 16 16 N 1.31414 * 119.99488 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00213 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46995 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47116 * 119.99847 * 17 15 13 20 20 H 1.48498 * 109.47119 * 239.99852 * 17 15 13 21 21 C 1.34779 * 120.00335 * 180.02562 * 2 1 3 22 22 O 1.21604 * 120.00084 * 179.58159 * 21 2 1 23 23 C 1.47381 * 119.99553 * 359.57646 * 21 2 1 24 24 C 1.47017 * 127.19207 * 9.85509 * 23 21 2 25 25 C 1.34179 * 105.95114 * 179.82624 * 24 23 21 26 26 O 1.34213 * 109.12422 * 0.43488 * 25 24 23 27 27 C 1.33651 * 110.91094 * 359.70984 * 26 25 24 28 28 H 1.09002 * 109.46817 * 96.62335 * 1 2 3 29 29 H 1.09001 * 109.46902 * 216.62378 * 1 2 3 30 30 H 1.09000 * 109.47101 * 336.61988 * 1 2 3 31 31 H 1.09007 * 109.47141 * 150.00188 * 3 2 1 32 32 H 1.09002 * 109.47290 * 30.00442 * 3 2 1 33 33 H 1.09007 * 114.17143 * 27.14353 * 6 4 3 34 34 H 1.09001 * 114.17187 * 254.43723 * 6 4 3 35 35 H 1.09005 * 113.47443 * 219.20898 * 7 6 4 36 36 H 1.09001 * 113.47997 * 88.74569 * 7 6 4 37 37 H 1.09000 * 109.46735 * 67.49835 * 9 8 4 38 38 H 1.08993 * 109.47050 * 307.49881 * 9 8 4 39 39 H 0.96994 * 120.00552 * 0.02562 * 12 10 9 40 40 H 0.97002 * 119.99735 * 180.02562 * 16 15 13 41 41 H 1.08001 * 127.02600 * 359.97438 * 24 23 21 42 42 H 1.08004 * 125.43953 * 180.13922 * 25 24 23 43 43 H 1.07999 * 125.80377 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 1 1.5630 2.1183 -1.9226 6 6 3.6942 2.5994 -1.5994 7 6 3.8977 1.7908 -2.8884 8 7 3.1443 0.6926 -2.2550 9 6 2.2219 0.0666 -3.2117 10 6 2.9112 -1.0878 -3.8924 11 8 4.0579 -1.3624 -3.6081 12 7 2.2531 -1.8157 -4.8162 13 6 2.8800 -2.8662 -5.4350 14 1 3.9010 -3.1108 -5.1819 15 6 2.2017 -3.6164 -6.3880 16 7 0.9595 -3.3185 -6.6963 17 14 3.0556 -5.0483 -7.2306 18 1 4.4408 -5.1741 -6.7103 19 1 2.3076 -6.3015 -6.9565 20 1 3.0975 -4.8071 -8.6953 21 6 2.1390 -1.1672 -0.0005 22 8 3.3550 -1.1671 -0.0082 23 6 1.4021 -2.4435 0.0083 24 6 -0.0428 -2.6368 -0.1822 25 6 -0.2522 -3.9594 -0.0972 26 8 0.9173 -4.5759 0.1340 27 6 1.9174 -3.6918 0.2009 28 1 -0.3633 -0.1185 -1.0208 29 1 -0.3633 -0.8248 0.6131 30 1 -0.3633 0.9433 0.4078 31 1 3.1500 1.1385 0.5138 32 1 1.6084 2.0284 0.5139 33 1 4.4607 2.4331 -0.8425 34 1 3.4706 3.6534 -1.7644 35 1 4.9409 1.5443 -3.0862 36 1 3.3939 2.2201 -3.7545 37 1 1.9197 0.8008 -3.9586 38 1 1.3411 -0.2969 -2.6826 39 1 1.3360 -1.5963 -5.0434 40 1 0.4859 -3.8424 -7.3612 41 1 -0.7839 -1.8710 -0.3575 42 1 -1.2099 -4.4493 -0.1943 43 1 2.9568 -3.9259 0.3777 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230753700.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:40 Heat of formation + Delta-G solvation = -12.110918 kcal Electronic energy + Delta-G solvation = -28414.650436 eV Core-core repulsion = 24463.209152 eV Total energy + Delta-G solvation = -3951.441284 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.46032 -41.57988 -40.14974 -39.47605 -36.46927 -35.94479 -33.95390 -33.32585 -32.01384 -30.70417 -29.87405 -27.64194 -27.49512 -25.35106 -25.20652 -23.14619 -22.39960 -21.12157 -20.61241 -20.39309 -19.93401 -18.51016 -17.75999 -17.46394 -17.27750 -16.98380 -16.86013 -16.71793 -16.44925 -15.86178 -15.60973 -15.44389 -15.08804 -14.81221 -14.35824 -14.21175 -14.06443 -13.92173 -13.77384 -13.57102 -13.28310 -12.98047 -12.69874 -12.62805 -12.46002 -12.38650 -12.19180 -12.14632 -11.93208 -11.54856 -11.47425 -10.87954 -10.67425 -10.38373 -10.01403 -9.81923 -9.65053 -9.30429 -8.48565 -5.96646 0.46495 1.20284 1.32438 1.36569 1.51251 1.98098 2.05272 2.21088 2.27236 2.48058 2.88889 3.16826 3.39706 3.58732 3.69754 3.83397 3.86039 4.05780 4.14546 4.24070 4.26591 4.30766 4.38497 4.44468 4.50242 4.54519 4.61379 4.69800 4.74909 4.81807 4.95197 4.98719 4.99634 5.05189 5.27392 5.37809 5.40442 5.47895 5.77510 5.93654 6.04802 6.19626 6.51421 6.60491 7.12608 7.38512 7.54821 8.14059 8.69473 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010101 B = 0.005444 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2771.335034 B = 5142.127056 C = 6999.586259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.606 5.606 3 C 0.135 3.865 4 C 0.007 3.993 5 H 0.100 0.900 6 C -0.110 4.110 7 C -0.010 4.010 8 N -0.455 5.455 9 C 0.032 3.968 10 C 0.443 3.557 11 O -0.615 6.615 12 N -0.576 5.576 13 C -0.331 4.331 14 H 0.069 0.931 15 C -0.010 4.010 16 N -0.919 5.919 17 Si 0.988 3.012 18 H -0.279 1.279 19 H -0.267 1.267 20 H -0.266 1.266 21 C 0.579 3.421 22 O -0.562 6.562 23 C -0.260 4.260 24 C -0.211 4.211 25 C -0.036 4.036 26 O -0.186 6.186 27 C 0.025 3.975 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.063 0.937 32 H 0.125 0.875 33 H 0.086 0.914 34 H 0.113 0.887 35 H 0.052 0.948 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.394 0.606 40 H 0.278 0.722 41 H 0.200 0.800 42 H 0.247 0.753 43 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.624 10.369 14.775 20.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.338 5.338 3 C 0.013 3.987 4 C -0.103 4.103 5 H 0.118 0.882 6 C -0.148 4.148 7 C -0.139 4.139 8 N -0.178 5.178 9 C -0.100 4.100 10 C 0.231 3.769 11 O -0.500 6.500 12 N -0.214 5.214 13 C -0.460 4.460 14 H 0.087 0.913 15 C -0.209 4.209 16 N -0.560 5.560 17 Si 0.812 3.188 18 H -0.204 1.204 19 H -0.192 1.192 20 H -0.191 1.191 21 C 0.369 3.631 22 O -0.441 6.441 23 C -0.264 4.264 24 C -0.230 4.230 25 C -0.101 4.101 26 O -0.081 6.081 27 C -0.046 4.046 28 H 0.074 0.926 29 H 0.111 0.889 30 H 0.123 0.877 31 H 0.081 0.919 32 H 0.143 0.857 33 H 0.105 0.895 34 H 0.131 0.869 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.227 0.773 40 H 0.087 0.913 41 H 0.217 0.783 42 H 0.263 0.737 43 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -9.019 9.219 15.171 19.911 hybrid contribution -0.194 -0.254 -1.488 1.522 sum -9.212 8.964 13.682 18.773 Atomic orbital electron populations 1.22687 0.77814 1.05703 1.02352 1.47492 1.07934 1.04927 1.73435 1.21619 0.97751 0.84530 0.94839 1.24044 0.97884 0.92100 0.96287 0.88206 1.23041 0.96593 0.99146 0.95995 1.23845 0.99893 0.92147 0.98038 1.68929 1.15954 1.18615 1.14294 1.22261 0.96026 0.95720 0.95990 1.20809 0.87477 0.86388 0.82266 1.90506 1.20391 1.72520 1.66580 1.41890 1.14982 1.28458 1.36084 1.19592 0.98556 1.08292 1.19578 0.91298 1.25955 0.96406 1.01181 0.97397 1.69668 1.10714 1.41808 1.33832 0.84946 0.77931 0.77737 0.78171 1.20418 1.19228 1.19126 1.17476 0.86064 0.83730 0.75838 1.90813 1.15148 1.87618 1.50480 1.21726 0.95955 0.94337 1.14395 1.23879 0.93833 0.97999 1.07249 1.24885 0.89037 0.92682 1.03492 1.83805 1.16438 1.38307 1.69523 1.24478 0.93398 0.86972 0.99712 0.92567 0.88899 0.87654 0.91865 0.85727 0.89530 0.86892 0.92915 0.90600 0.90827 0.89193 0.77270 0.91269 0.78325 0.73662 0.77258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.86 8.77 127.77 1.12 1.98 16 2 N -0.61 -15.34 2.61 -850.70 -2.22 -17.56 16 3 C 0.14 2.97 5.62 86.38 0.49 3.46 16 4 C 0.01 0.17 3.36 42.19 0.14 0.31 16 5 H 0.10 1.86 7.91 -2.39 -0.02 1.84 16 6 C -0.11 -2.37 8.00 30.94 0.25 -2.13 16 7 C -0.01 -0.32 7.69 83.58 0.64 0.32 16 8 N -0.46 -16.63 4.40 -906.74 -3.99 -20.62 16 9 C 0.03 1.25 5.26 85.56 0.45 1.70 16 10 C 0.44 23.70 7.83 87.66 0.69 24.38 16 11 O -0.62 -38.98 16.01 -3.06 -0.05 -39.03 16 12 N -0.58 -31.94 5.29 -306.98 -1.62 -33.56 16 13 C -0.33 -20.09 9.68 84.04 0.81 -19.27 16 14 H 0.07 4.56 7.16 -2.91 -0.02 4.54 16 15 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 16 N -0.92 -50.89 13.05 21.66 0.28 -50.60 16 17 Si 0.99 45.03 29.55 68.60 2.03 47.06 16 18 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 21 C 0.58 20.75 7.16 86.65 0.62 21.37 16 22 O -0.56 -25.80 15.92 -4.04 -0.06 -25.87 16 23 C -0.26 -8.51 6.08 -18.99 -0.12 -8.63 16 24 C -0.21 -5.02 8.87 23.65 0.21 -4.81 16 25 C -0.04 -0.80 12.03 66.89 0.80 0.01 16 26 O -0.19 -5.39 10.52 4.50 0.05 -5.35 16 27 C 0.02 0.82 11.92 67.39 0.80 1.63 16 28 H 0.06 0.88 7.62 -2.39 -0.02 0.86 16 29 H 0.09 1.33 4.83 -2.39 -0.01 1.31 16 30 H 0.10 0.86 7.82 -2.39 -0.02 0.84 16 31 H 0.06 1.75 7.16 -2.38 -0.02 1.73 16 32 H 0.12 1.51 7.85 -2.39 -0.02 1.50 16 33 H 0.09 2.03 7.94 -2.38 -0.02 2.01 16 34 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 36 H 0.08 2.13 7.44 -2.39 -0.02 2.12 16 37 H 0.07 2.50 7.35 -2.39 -0.02 2.48 16 38 H 0.09 3.27 7.85 -2.39 -0.02 3.25 16 39 H 0.39 20.54 7.90 -92.71 -0.73 19.81 16 40 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 41 H 0.20 3.25 4.89 -2.91 -0.01 3.24 16 42 H 0.25 2.99 8.06 -2.91 -0.02 2.96 16 43 H 0.21 6.66 8.06 -2.91 -0.02 6.64 16 Total: -1.00 -89.26 360.88 2.11 -87.15 By element: Atomic # 1 Polarization: 37.84 SS G_CDS: 0.32 Total: 38.16 kcal Atomic # 6 Polarization: 12.85 SS G_CDS: 7.38 Total: 20.23 kcal Atomic # 7 Polarization: -114.80 SS G_CDS: -7.55 Total: -122.35 kcal Atomic # 8 Polarization: -70.18 SS G_CDS: -0.07 Total: -70.24 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -89.26 2.11 -87.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230753700.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.035 kcal (2) G-P(sol) polarization free energy of solvation -89.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds