Wall clock time and date at job start Tue Mar 31 2020 13:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00322 * 2 1 4 4 C 1.52999 * 109.46881 * 90.00131 * 3 2 1 5 5 H 1.08996 * 112.74834 * 284.22919 * 4 3 2 6 6 C 1.53517 * 113.47750 * 153.38185 * 4 3 2 7 7 C 1.53509 * 83.57584 * 219.21082 * 6 4 3 8 8 N 1.47477 * 87.93425 * 26.02164 * 7 6 4 9 9 C 1.46903 * 111.00266 * 221.29423 * 8 7 6 10 10 C 1.50698 * 109.47492 * 265.97605 * 9 8 7 11 11 O 1.21289 * 119.99792 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99724 * 179.97438 * 10 9 8 13 13 C 1.37102 * 119.99504 * 179.97438 * 12 10 9 14 14 H 1.07998 * 120.00284 * 359.97438 * 13 12 10 15 15 C 1.38958 * 119.99659 * 179.97438 * 13 12 10 16 16 N 1.31408 * 120.00031 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99646 * 179.72203 * 15 13 12 18 18 H 1.48506 * 109.46921 * 180.27473 * 17 15 13 19 19 H 1.48498 * 109.47465 * 300.28087 * 17 15 13 20 20 H 1.48505 * 109.46944 * 60.28138 * 17 15 13 21 21 C 1.34784 * 119.99473 * 180.02562 * 2 1 3 22 22 O 1.21619 * 119.99486 * 186.37533 * 21 2 1 23 23 C 1.47375 * 120.00486 * 6.37528 * 21 2 1 24 24 C 1.47017 * 127.19723 * 187.86231 * 23 21 2 25 25 C 1.34171 * 105.95750 * 179.83277 * 24 23 21 26 26 O 1.34215 * 109.12517 * 0.43469 * 25 24 23 27 27 C 1.33657 * 110.90408 * 359.70790 * 26 25 24 28 28 H 1.09001 * 109.47109 * 95.85992 * 1 2 3 29 29 H 1.08998 * 109.47128 * 215.86407 * 1 2 3 30 30 H 1.08999 * 109.46543 * 335.86185 * 1 2 3 31 31 H 1.08990 * 109.47114 * 330.00151 * 3 2 1 32 32 H 1.09002 * 109.47304 * 210.00010 * 3 2 1 33 33 H 1.09004 * 114.16548 * 332.85237 * 6 4 3 34 34 H 1.09000 * 114.17240 * 105.37235 * 6 4 3 35 35 H 1.08997 * 113.47496 * 271.25421 * 7 6 4 36 36 H 1.09000 * 113.47884 * 140.79323 * 7 6 4 37 37 H 1.09003 * 109.47212 * 145.96740 * 9 8 7 38 38 H 1.09011 * 109.46545 * 25.97742 * 9 8 7 39 39 H 0.97003 * 120.00303 * 359.97438 * 12 10 9 40 40 H 0.97000 * 119.99839 * 359.72024 * 16 15 13 41 41 H 1.08004 * 127.01917 * 359.97438 * 24 23 21 42 42 H 1.08000 * 125.44099 * 180.14791 * 25 24 23 43 43 H 1.08000 * 125.79884 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7102 1.4425 5 1 1.5626 2.1174 1.9222 6 6 3.6943 2.5991 1.5996 7 6 3.8979 1.7904 2.8884 8 7 3.1443 0.6923 2.2550 9 6 2.2219 0.0663 3.2118 10 6 2.8900 -1.1256 3.8475 11 8 4.0229 -1.4245 3.5341 12 7 2.2286 -1.8593 4.7643 13 6 2.8362 -2.9439 5.3423 14 1 3.8447 -3.2106 5.0626 15 6 2.1545 -3.7001 6.2880 16 7 0.9272 -3.3759 6.6279 17 14 2.9796 -5.1825 7.0697 18 1 2.0456 -5.8176 8.0339 19 1 3.3422 -6.1614 6.0136 20 1 4.2069 -4.7468 7.7833 21 6 2.1388 -1.1673 -0.0005 22 8 3.3494 -1.1706 0.1164 23 6 1.4088 -2.4396 -0.1428 24 6 1.9546 -3.7977 -0.0053 25 6 0.9250 -4.6321 -0.2150 26 8 -0.1783 -3.9128 -0.4732 27 6 0.0865 -2.6033 -0.4355 28 1 -0.3633 -0.1049 -1.0223 29 1 -0.3633 -0.8328 0.6021 30 1 -0.3632 0.9378 0.4203 31 1 1.6086 2.0283 -0.5138 32 1 3.1500 1.1383 -0.5138 33 1 4.4609 2.4327 0.8426 34 1 3.4708 3.6536 1.7613 35 1 3.3941 2.2197 3.7544 36 1 4.9410 1.5438 3.0862 37 1 1.3215 -0.2574 2.6898 38 1 1.9547 0.7878 3.9840 39 1 1.3226 -1.6200 5.0153 40 1 0.4987 -2.6063 6.2217 41 1 2.9754 -4.0685 0.2210 42 1 0.9768 -5.7104 -0.1858 43 1 -0.6254 -1.8096 -0.6079 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230753701.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:45 Heat of formation + Delta-G solvation = 18.854088 kcal Electronic energy + Delta-G solvation = -28442.577856 eV Core-core repulsion = 24492.479316 eV Total energy + Delta-G solvation = -3950.098540 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.41666 -40.42862 -38.85402 -37.72537 -35.36742 -34.12674 -32.75372 -31.23902 -30.69448 -30.07374 -28.35599 -26.89463 -25.50907 -23.99063 -23.54296 -22.08075 -21.32908 -19.75257 -19.52864 -19.49712 -17.78519 -17.43725 -16.45132 -16.28924 -16.14686 -15.86156 -15.68655 -15.58579 -14.52416 -14.45130 -14.28719 -13.96889 -13.64286 -13.51678 -13.09710 -12.93437 -12.81797 -12.72083 -12.47403 -12.39511 -11.88992 -11.64342 -11.52111 -11.22398 -11.10525 -10.90357 -10.79315 -10.48390 -10.15587 -9.75784 -9.61533 -9.53805 -9.41321 -8.81248 -8.66324 -8.36758 -8.05333 -7.90163 -6.64907 -3.76301 1.50569 2.29829 2.89232 3.14733 3.37538 3.39217 3.59818 3.68271 3.99023 4.07314 4.38031 4.52488 4.63101 4.68645 4.80594 4.88956 4.99145 5.03284 5.06897 5.23124 5.26981 5.28899 5.37970 5.43778 5.52062 5.62635 5.66394 5.69488 5.78625 5.85727 5.90161 6.01383 6.03481 6.16770 6.28234 6.44502 6.56529 6.73467 7.07431 7.31322 7.52102 7.92708 8.19167 8.55635 8.73348 8.95706 9.60703 10.05906 10.78971 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.009932 B = 0.005492 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.629626 B = 5096.891707 C = 7041.937066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.618 5.618 3 C 0.142 3.858 4 C 0.000 4.000 5 H 0.072 0.928 6 C -0.134 4.134 7 C 0.001 3.999 8 N -0.408 5.408 9 C 0.013 3.987 10 C 0.454 3.546 11 O -0.555 6.555 12 N -0.585 5.585 13 C -0.374 4.374 14 H 0.096 0.904 15 C -0.012 4.012 16 N -0.907 5.907 17 Si 1.090 2.910 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.285 1.285 21 C 0.580 3.420 22 O -0.483 6.483 23 C -0.222 4.222 24 C -0.156 4.156 25 C -0.045 4.045 26 O -0.179 6.179 27 C -0.014 4.014 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.051 0.949 39 H 0.372 0.628 40 H 0.259 0.741 41 H 0.159 0.841 42 H 0.207 0.793 43 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.392 9.442 -15.093 18.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.354 5.354 3 C 0.019 3.981 4 C -0.112 4.112 5 H 0.090 0.910 6 C -0.172 4.172 7 C -0.129 4.129 8 N -0.130 5.130 9 C -0.120 4.120 10 C 0.239 3.761 11 O -0.435 6.435 12 N -0.225 5.225 13 C -0.504 4.504 14 H 0.114 0.886 15 C -0.214 4.214 16 N -0.547 5.547 17 Si 0.916 3.084 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.211 1.211 21 C 0.368 3.632 22 O -0.355 6.355 23 C -0.227 4.227 24 C -0.176 4.176 25 C -0.110 4.110 26 O -0.075 6.075 27 C -0.084 4.084 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.204 0.796 40 H 0.070 0.930 41 H 0.176 0.824 42 H 0.224 0.776 43 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -5.062 7.227 -14.502 16.975 hybrid contribution -0.917 2.084 -0.213 2.287 sum -5.979 9.311 -14.715 18.411 Atomic orbital electron populations 1.22237 0.81021 1.03681 1.01161 1.47480 1.05874 1.05938 1.76131 1.21396 0.97707 0.83929 0.95104 1.23915 0.96785 0.93791 0.96681 0.91044 1.23131 0.97539 0.97561 0.98966 1.23763 1.01844 0.91695 0.95556 1.68968 1.14457 1.16087 1.13509 1.22473 0.96397 0.97568 0.95540 1.19577 0.87822 0.85640 0.83033 1.90554 1.18577 1.71065 1.63351 1.41926 1.15324 1.27474 1.37758 1.20491 1.02092 1.05673 1.22134 0.88588 1.26421 0.96057 1.03052 0.95840 1.70897 1.12663 1.27811 1.43370 0.83157 0.74847 0.74191 0.76204 1.20486 1.21109 1.21125 1.17215 0.86975 0.81939 0.77061 1.90887 1.13142 1.86168 1.45273 1.21620 0.94180 0.95071 1.11786 1.22828 1.01028 0.90105 1.03608 1.23911 0.83338 0.97737 1.06050 1.83782 1.36872 1.17486 1.69318 1.25447 0.96825 0.83817 1.02270 0.92358 0.90514 0.90645 0.90541 0.89299 0.88717 0.90909 0.92018 0.89487 0.90463 0.93122 0.79597 0.93013 0.82367 0.77646 0.76325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.53 8.68 59.85 0.52 1.05 16 2 N -0.62 -8.05 2.63 -182.87 -0.48 -8.53 16 3 C 0.14 1.66 5.53 -4.04 -0.02 1.64 16 4 C 0.00 -0.01 3.35 -71.43 -0.24 -0.25 16 5 H 0.07 0.80 7.91 -51.93 -0.41 0.39 16 6 C -0.13 -1.56 8.00 -26.20 -0.21 -1.77 16 7 C 0.00 0.01 7.71 -7.55 -0.06 -0.05 16 8 N -0.41 -7.39 4.14 -237.94 -0.99 -8.38 16 9 C 0.01 0.25 5.30 -4.98 -0.03 0.22 16 10 C 0.45 11.74 7.85 -10.99 -0.09 11.65 16 11 O -0.55 -16.73 16.01 5.55 0.09 -16.64 16 12 N -0.59 -15.70 5.28 -10.96 -0.06 -15.76 16 13 C -0.37 -11.09 9.68 -14.93 -0.14 -11.23 16 14 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 15 C -0.01 -0.35 5.50 -17.47 -0.10 -0.45 16 16 N -0.91 -26.29 13.68 55.50 0.76 -25.53 16 17 Si 1.09 25.35 29.92 -169.99 -5.09 20.26 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 C 0.58 10.21 7.23 -12.54 -0.09 10.12 16 22 O -0.48 -10.75 15.71 5.26 0.08 -10.67 16 23 C -0.22 -3.62 6.11 -103.28 -0.63 -4.25 16 24 C -0.16 -2.61 11.02 -37.46 -0.41 -3.02 16 25 C -0.04 -0.60 12.03 29.30 0.35 -0.25 16 26 O -0.18 -2.38 10.52 7.64 0.08 -2.30 16 27 C -0.01 -0.18 10.04 30.07 0.30 0.12 16 28 H 0.06 0.35 7.32 -51.93 -0.38 -0.03 16 29 H 0.08 0.71 5.48 -51.93 -0.28 0.42 16 30 H 0.07 0.49 8.03 -51.93 -0.42 0.08 16 31 H 0.08 0.61 8.07 -51.93 -0.42 0.19 16 32 H 0.09 1.21 7.25 -51.93 -0.38 0.83 16 33 H 0.09 1.13 7.94 -51.93 -0.41 0.71 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.89 7.42 -51.93 -0.39 0.50 16 36 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.08 1.42 7.89 -51.93 -0.41 1.01 16 38 H 0.05 0.89 7.30 -51.92 -0.38 0.51 16 39 H 0.37 9.25 6.73 -40.82 -0.27 8.98 16 40 H 0.26 7.24 6.77 -40.82 -0.28 6.97 16 41 H 0.16 2.80 8.06 -52.48 -0.42 2.37 16 42 H 0.21 1.99 8.06 -52.49 -0.42 1.56 16 43 H 0.22 1.78 4.50 -52.49 -0.24 1.54 16 LS Contribution 359.41 15.07 5.42 5.42 Total: -1.00 -40.00 359.41 -6.55 -46.55 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -5.52 Total: 12.03 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -0.84 Total: 3.54 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: -0.76 Total: -58.19 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: 0.25 Total: -29.60 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -5.09 Total: 20.26 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -40.00 -6.55 -46.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230753701.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.408 kcal (2) G-P(sol) polarization free energy of solvation -40.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds