Wall clock time and date at job start Tue Mar 31 2020 13:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00322 * 2 1 4 4 C 1.52999 * 109.46881 * 90.00131 * 3 2 1 5 5 H 1.08996 * 112.74834 * 284.22919 * 4 3 2 6 6 C 1.53517 * 113.47750 * 153.38185 * 4 3 2 7 7 C 1.53509 * 83.57584 * 219.21082 * 6 4 3 8 8 N 1.47477 * 87.93425 * 26.02164 * 7 6 4 9 9 C 1.46903 * 111.00266 * 221.29423 * 8 7 6 10 10 C 1.50698 * 109.47492 * 265.97605 * 9 8 7 11 11 O 1.21289 * 119.99792 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99724 * 179.97438 * 10 9 8 13 13 C 1.37102 * 119.99504 * 179.97438 * 12 10 9 14 14 H 1.07998 * 120.00284 * 359.97438 * 13 12 10 15 15 C 1.38958 * 119.99659 * 179.97438 * 13 12 10 16 16 N 1.31408 * 120.00031 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99646 * 179.72203 * 15 13 12 18 18 H 1.48506 * 109.46921 * 180.27473 * 17 15 13 19 19 H 1.48498 * 109.47465 * 300.28087 * 17 15 13 20 20 H 1.48505 * 109.46944 * 60.28138 * 17 15 13 21 21 C 1.34784 * 119.99473 * 180.02562 * 2 1 3 22 22 O 1.21619 * 119.99486 * 186.37533 * 21 2 1 23 23 C 1.47375 * 120.00486 * 6.37528 * 21 2 1 24 24 C 1.47017 * 127.19723 * 187.86231 * 23 21 2 25 25 C 1.34171 * 105.95750 * 179.83277 * 24 23 21 26 26 O 1.34215 * 109.12517 * 0.43469 * 25 24 23 27 27 C 1.33657 * 110.90408 * 359.70790 * 26 25 24 28 28 H 1.09001 * 109.47109 * 95.85992 * 1 2 3 29 29 H 1.08998 * 109.47128 * 215.86407 * 1 2 3 30 30 H 1.08999 * 109.46543 * 335.86185 * 1 2 3 31 31 H 1.08990 * 109.47114 * 330.00151 * 3 2 1 32 32 H 1.09002 * 109.47304 * 210.00010 * 3 2 1 33 33 H 1.09004 * 114.16548 * 332.85237 * 6 4 3 34 34 H 1.09000 * 114.17240 * 105.37235 * 6 4 3 35 35 H 1.08997 * 113.47496 * 271.25421 * 7 6 4 36 36 H 1.09000 * 113.47884 * 140.79323 * 7 6 4 37 37 H 1.09003 * 109.47212 * 145.96740 * 9 8 7 38 38 H 1.09011 * 109.46545 * 25.97742 * 9 8 7 39 39 H 0.97003 * 120.00303 * 359.97438 * 12 10 9 40 40 H 0.97000 * 119.99839 * 359.72024 * 16 15 13 41 41 H 1.08004 * 127.01917 * 359.97438 * 24 23 21 42 42 H 1.08000 * 125.44099 * 180.14791 * 25 24 23 43 43 H 1.08000 * 125.79884 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7102 1.4425 5 1 1.5626 2.1174 1.9222 6 6 3.6943 2.5991 1.5996 7 6 3.8979 1.7904 2.8884 8 7 3.1443 0.6923 2.2550 9 6 2.2219 0.0663 3.2118 10 6 2.8900 -1.1256 3.8475 11 8 4.0229 -1.4245 3.5341 12 7 2.2286 -1.8593 4.7643 13 6 2.8362 -2.9439 5.3423 14 1 3.8447 -3.2106 5.0626 15 6 2.1545 -3.7001 6.2880 16 7 0.9272 -3.3759 6.6279 17 14 2.9796 -5.1825 7.0697 18 1 2.0456 -5.8176 8.0339 19 1 3.3422 -6.1614 6.0136 20 1 4.2069 -4.7468 7.7833 21 6 2.1388 -1.1673 -0.0005 22 8 3.3494 -1.1706 0.1164 23 6 1.4088 -2.4396 -0.1428 24 6 1.9546 -3.7977 -0.0053 25 6 0.9250 -4.6321 -0.2150 26 8 -0.1783 -3.9128 -0.4732 27 6 0.0865 -2.6033 -0.4355 28 1 -0.3633 -0.1049 -1.0223 29 1 -0.3633 -0.8328 0.6021 30 1 -0.3632 0.9378 0.4203 31 1 1.6086 2.0283 -0.5138 32 1 3.1500 1.1383 -0.5138 33 1 4.4609 2.4327 0.8426 34 1 3.4708 3.6536 1.7613 35 1 3.3941 2.2197 3.7544 36 1 4.9410 1.5438 3.0862 37 1 1.3215 -0.2574 2.6898 38 1 1.9547 0.7878 3.9840 39 1 1.3226 -1.6200 5.0153 40 1 0.4987 -2.6063 6.2217 41 1 2.9754 -4.0685 0.2210 42 1 0.9768 -5.7104 -0.1858 43 1 -0.6254 -1.8096 -0.6079 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230753701.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:44 Heat of formation + Delta-G solvation = -12.979755 kcal Electronic energy + Delta-G solvation = -28443.958275 eV Core-core repulsion = 24492.479316 eV Total energy + Delta-G solvation = -3951.478960 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.51320 -41.64098 -40.22173 -39.60868 -36.53009 -36.31506 -33.89301 -33.24041 -32.14269 -31.30645 -29.37219 -27.81709 -27.32616 -25.38062 -25.10185 -23.14330 -22.42362 -21.54604 -20.81678 -20.56885 -19.98308 -18.50781 -18.11943 -17.55228 -17.26718 -17.18879 -16.94730 -16.81307 -16.25454 -15.97362 -15.51236 -15.48854 -15.16992 -15.01534 -14.40301 -14.17550 -14.04637 -13.95304 -13.85691 -13.47690 -13.40255 -12.91626 -12.73603 -12.70837 -12.61189 -12.29402 -12.04671 -11.95084 -11.88585 -11.60134 -11.53021 -10.89840 -10.80584 -10.44791 -10.11213 -9.77749 -9.75835 -9.37237 -8.95531 -6.07641 0.42373 1.09970 1.48897 1.49175 1.78148 1.88699 2.01118 2.15287 2.37272 2.47244 2.78183 3.13079 3.28412 3.52137 3.59823 3.71658 3.78900 3.95385 4.04022 4.12824 4.20919 4.22677 4.25291 4.32526 4.42168 4.48377 4.55948 4.63246 4.68447 4.75846 4.82719 4.93610 4.95671 5.02009 5.22180 5.24500 5.42598 5.57880 5.72306 5.93048 5.96267 6.11601 6.45736 6.57612 6.76594 7.37203 7.42888 7.96560 8.52460 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.009932 B = 0.005492 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.629626 B = 5096.891707 C = 7041.937066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.610 5.610 3 C 0.138 3.862 4 C 0.006 3.994 5 H 0.104 0.896 6 C -0.109 4.109 7 C -0.012 4.012 8 N -0.454 5.454 9 C 0.032 3.968 10 C 0.447 3.553 11 O -0.608 6.608 12 N -0.591 5.591 13 C -0.407 4.407 14 H 0.063 0.937 15 C -0.040 4.040 16 N -0.915 5.915 17 Si 1.131 2.869 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.275 1.275 21 C 0.572 3.428 22 O -0.554 6.554 23 C -0.268 4.268 24 C -0.212 4.212 25 C -0.023 4.023 26 O -0.175 6.175 27 C 0.022 3.978 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.108 0.892 31 H 0.130 0.870 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.115 0.885 35 H 0.077 0.923 36 H 0.050 0.950 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.381 0.619 40 H 0.257 0.743 41 H 0.127 0.873 42 H 0.242 0.758 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.078 11.277 -15.841 21.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.343 5.343 3 C 0.015 3.985 4 C -0.104 4.104 5 H 0.121 0.879 6 C -0.147 4.147 7 C -0.141 4.141 8 N -0.177 5.177 9 C -0.100 4.100 10 C 0.234 3.766 11 O -0.491 6.491 12 N -0.231 5.231 13 C -0.537 4.537 14 H 0.081 0.919 15 C -0.238 4.238 16 N -0.554 5.554 17 Si 0.950 3.050 18 H -0.190 1.190 19 H -0.201 1.201 20 H -0.200 1.200 21 C 0.361 3.639 22 O -0.431 6.431 23 C -0.272 4.272 24 C -0.232 4.232 25 C -0.089 4.089 26 O -0.070 6.070 27 C -0.047 4.047 28 H 0.112 0.888 29 H 0.088 0.912 30 H 0.127 0.873 31 H 0.148 0.852 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.133 0.867 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.215 0.785 40 H 0.068 0.932 41 H 0.145 0.855 42 H 0.258 0.742 43 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -8.836 9.123 -15.264 19.857 hybrid contribution 0.199 1.563 -0.030 1.576 sum -8.636 10.686 -15.295 20.560 Atomic orbital electron populations 1.22619 0.77840 1.05282 1.03588 1.47548 1.07875 1.04864 1.74044 1.21602 0.97635 0.84490 0.94765 1.24073 0.97960 0.91955 0.96379 0.87873 1.23022 0.96611 0.99206 0.95866 1.23879 0.99846 0.92210 0.98182 1.68969 1.15953 1.18601 1.14176 1.22274 0.96214 0.95173 0.96334 1.20842 0.87293 0.86624 0.81812 1.90519 1.21198 1.72733 1.64690 1.41960 1.15735 1.27258 1.38179 1.20428 1.01472 1.07821 1.23956 0.91930 1.27770 0.95888 1.04776 0.95353 1.70968 1.12925 1.28000 1.43520 0.82682 0.74662 0.71568 0.76040 1.18995 1.20147 1.20012 1.17575 0.86434 0.83557 0.76354 1.90845 1.15993 1.87266 1.49013 1.21772 0.96091 0.94478 1.14892 1.22878 1.00943 0.92192 1.07143 1.24408 0.82224 0.98845 1.03388 1.83835 1.36392 1.17927 1.68820 1.26234 0.95794 0.84184 0.98455 0.88808 0.91189 0.87329 0.85212 0.92166 0.89688 0.86713 0.90460 0.93100 0.89093 0.90633 0.78487 0.93182 0.85498 0.74189 0.71653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.58 8.68 127.77 1.11 1.69 16 2 N -0.61 -14.53 2.63 -850.73 -2.23 -16.77 16 3 C 0.14 2.85 5.53 86.38 0.48 3.33 16 4 C 0.01 0.15 3.35 42.19 0.14 0.29 16 5 H 0.10 1.74 7.91 -2.39 -0.02 1.72 16 6 C -0.11 -2.29 8.00 30.94 0.25 -2.04 16 7 C -0.01 -0.37 7.71 83.58 0.64 0.27 16 8 N -0.45 -16.48 4.14 -906.69 -3.76 -20.24 16 9 C 0.03 1.24 5.30 85.56 0.45 1.69 16 10 C 0.45 24.06 7.85 87.66 0.69 24.75 16 11 O -0.61 -39.19 16.01 -3.06 -0.05 -39.24 16 12 N -0.59 -32.78 5.28 -306.99 -1.62 -34.40 16 13 C -0.41 -25.11 9.68 84.04 0.81 -24.30 16 14 H 0.06 4.22 7.16 -2.91 -0.02 4.20 16 15 C -0.04 -2.28 5.50 84.93 0.47 -1.82 16 16 N -0.91 -52.76 13.68 21.67 0.30 -52.46 16 17 Si 1.13 51.23 29.92 68.60 2.05 53.28 16 18 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 19 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 21 C 0.57 20.67 7.23 86.65 0.63 21.30 16 22 O -0.55 -26.66 15.71 -4.09 -0.06 -26.72 16 23 C -0.27 -8.90 6.11 -19.00 -0.12 -9.01 16 24 C -0.21 -7.60 11.02 23.64 0.26 -7.34 16 25 C -0.02 -0.61 12.03 66.89 0.80 0.19 16 26 O -0.18 -4.26 10.52 4.43 0.05 -4.21 16 27 C 0.02 0.50 10.04 67.39 0.68 1.18 16 28 H 0.09 0.54 7.32 -2.39 -0.02 0.53 16 29 H 0.07 0.98 5.48 -2.39 -0.01 0.97 16 30 H 0.11 0.69 8.03 -2.39 -0.02 0.67 16 31 H 0.13 1.33 8.07 -2.39 -0.02 1.31 16 32 H 0.06 1.62 7.25 -2.39 -0.02 1.60 16 33 H 0.08 1.97 7.94 -2.38 -0.02 1.95 16 34 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.08 2.11 7.42 -2.39 -0.02 2.09 16 36 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.09 3.21 7.89 -2.39 -0.02 3.19 16 38 H 0.08 2.51 7.30 -2.38 -0.02 2.49 16 39 H 0.38 19.28 6.73 -92.71 -0.62 18.66 16 40 H 0.26 14.40 6.77 -92.71 -0.63 13.77 16 41 H 0.13 5.19 8.06 -2.91 -0.02 5.17 16 42 H 0.24 4.34 8.06 -2.91 -0.02 4.32 16 43 H 0.27 3.02 4.50 -2.91 -0.01 3.01 16 Total: -1.00 -97.35 359.41 2.53 -94.82 By element: Atomic # 1 Polarization: 35.20 SS G_CDS: 0.57 Total: 35.78 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 7.29 Total: 10.17 kcal Atomic # 7 Polarization: -116.56 SS G_CDS: -7.32 Total: -123.88 kcal Atomic # 8 Polarization: -70.11 SS G_CDS: -0.07 Total: -70.17 kcal Atomic # 14 Polarization: 51.23 SS G_CDS: 2.05 Total: 53.28 kcal Total: -97.35 2.53 -94.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230753701.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.842 kcal (2) G-P(sol) polarization free energy of solvation -97.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds