Wall clock time and date at job start Tue Mar 31 2020 13:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 119.99583 * 2 1 4 4 C 1.52997 * 109.47356 * 275.35933 * 3 2 1 5 5 H 1.09001 * 112.73899 * 44.43022 * 4 3 2 6 6 C 1.53490 * 113.47063 * 273.68416 * 4 3 2 7 7 C 1.53613 * 83.30938 * 219.16633 * 6 4 3 8 8 N 1.47067 * 113.47061 * 175.16962 * 4 3 2 9 9 C 1.36941 * 136.05625 * 321.94159 * 8 4 3 10 10 H 1.08002 * 119.99890 * 358.21345 * 9 8 4 11 11 C 1.38812 * 119.99871 * 178.20710 * 9 8 4 12 12 N 1.31616 * 120.00225 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99925 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47075 * 60.00188 * 13 11 9 15 15 H 1.48503 * 109.47099 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46953 * 300.00184 * 13 11 9 17 17 C 1.34777 * 120.00163 * 180.02562 * 2 1 3 18 18 O 1.21282 * 119.99984 * 179.97438 * 17 2 1 19 19 C 1.50702 * 120.00051 * 359.97438 * 17 2 1 20 20 N 1.46493 * 109.47085 * 180.02562 * 19 17 2 21 21 C 1.34778 * 119.99860 * 179.97438 * 20 19 17 22 22 O 1.21608 * 119.99984 * 0.02562 * 21 20 19 23 23 C 1.47384 * 119.99865 * 179.97438 * 21 20 19 24 24 C 1.47018 * 127.19202 * 180.26285 * 23 21 20 25 25 C 1.34180 * 105.95428 * 180.15083 * 24 23 21 26 26 O 1.34213 * 109.12453 * 359.60779 * 25 24 23 27 27 C 1.33659 * 110.90600 * 0.26302 * 26 25 24 28 28 H 1.09005 * 109.46819 * 264.80116 * 1 2 3 29 29 H 1.08993 * 109.47535 * 24.80085 * 1 2 3 30 30 H 1.09006 * 109.47342 * 144.80433 * 1 2 3 31 31 H 1.09002 * 109.47196 * 35.36723 * 3 2 1 32 32 H 1.09004 * 109.46724 * 155.36652 * 3 2 1 33 33 H 1.08995 * 114.21174 * 332.74087 * 6 4 3 34 34 H 1.09009 * 114.20483 * 105.56396 * 6 4 3 35 35 H 1.08995 * 113.41793 * 271.24857 * 7 6 4 36 36 H 1.08998 * 113.55985 * 140.82167 * 7 6 4 37 37 H 0.96995 * 120.00575 * 179.97438 * 12 11 9 38 38 H 1.09002 * 109.47128 * 60.00097 * 19 17 2 39 39 H 1.08999 * 109.47013 * 300.00083 * 19 17 2 40 40 H 0.97006 * 120.00402 * 359.97438 * 20 19 17 41 41 H 1.08001 * 127.02078 * 0.02958 * 24 23 21 42 42 H 1.08000 * 125.43640 * 179.86632 * 25 24 23 43 43 H 1.08000 * 125.79920 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3357 1.7779 -1.4361 5 1 1.4092 1.6934 -2.0042 6 6 3.5574 1.2095 -2.1712 7 6 3.6552 2.6344 -2.7367 8 7 2.9605 3.1060 -1.5292 9 6 2.9158 4.2694 -0.8083 10 1 2.2718 4.3450 0.0555 11 6 3.6981 5.3514 -1.1876 12 7 4.4826 5.2594 -2.2405 13 14 3.6377 6.9382 -0.2038 14 1 4.0528 6.6687 1.1963 15 1 4.5595 7.9321 -0.8102 16 1 2.2531 7.4751 -0.2149 17 6 2.1389 -1.1672 -0.0005 18 8 3.3517 -1.1671 -0.0010 19 6 1.3854 -2.4723 -0.0005 20 7 2.3374 -3.5858 -0.0005 21 6 1.8882 -4.8565 0.0000 22 8 0.6926 -5.0787 0.0000 23 6 2.8460 -5.9767 -0.0006 24 6 2.5334 -7.4132 -0.0055 25 6 3.7156 -8.0479 -0.0007 26 8 4.7028 -7.1387 -0.0021 27 6 4.2078 -5.8972 -0.0020 28 1 -0.3633 -0.0931 1.0235 29 1 -0.3634 0.9328 -0.4310 30 1 -0.3634 -0.8398 -0.5923 31 1 1.6532 2.0024 0.5948 32 1 3.1881 1.1164 0.4284 33 1 4.3831 0.9307 -1.5167 34 1 3.3178 0.4487 -2.9143 35 1 3.0807 2.7778 -3.6517 36 1 4.6784 3.0008 -2.8197 37 1 5.0290 6.0156 -2.5058 38 1 0.7584 -2.5299 -0.8903 39 1 0.7591 -2.5303 0.8897 40 1 3.2912 -3.4085 -0.0009 41 1 1.5525 -7.8652 -0.0099 42 1 3.8510 -9.1194 -0.0004 43 1 4.7875 -4.9859 -0.0034 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234479003.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:03 Heat of formation + Delta-G solvation = 16.192781 kcal Electronic energy + Delta-G solvation = -26425.961147 eV Core-core repulsion = 22475.747203 eV Total energy + Delta-G solvation = -3950.213943 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.87135 -40.32445 -39.23622 -37.94222 -35.45407 -34.65084 -33.19023 -32.20970 -30.55996 -29.27295 -27.90710 -27.52292 -26.11212 -23.72461 -23.39371 -22.13907 -21.79269 -20.45045 -19.58461 -19.15879 -18.63549 -17.09112 -16.75396 -16.62573 -16.51373 -16.11145 -15.89933 -15.48559 -15.10834 -14.88294 -14.58923 -14.02061 -13.75070 -13.67537 -13.27882 -13.18135 -13.12253 -12.77066 -12.71756 -12.58534 -12.16518 -12.01502 -11.50345 -11.08869 -10.87636 -10.74936 -10.45107 -10.36560 -10.17089 -9.95026 -9.83522 -9.79796 -9.49526 -9.44626 -9.15366 -8.79395 -8.39406 -6.88548 -5.76330 -3.09947 1.01074 1.73242 2.51986 2.54855 2.66822 3.09451 3.22518 3.38314 3.42237 3.43925 4.24153 4.31628 4.33730 4.45644 4.73079 4.98478 5.07613 5.13562 5.21238 5.24353 5.30896 5.34461 5.46141 5.56094 5.56547 5.64581 5.82355 5.91563 5.94886 6.00633 6.06813 6.37010 6.44859 6.58335 6.59402 6.73673 6.77936 7.22639 7.24769 7.36960 7.48631 7.59887 7.93138 7.98542 8.10495 9.02371 9.69942 10.64505 11.40510 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.025448 B = 0.002319 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.017415 B =12069.026163 C =12638.137935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.603 5.603 3 C 0.114 3.886 4 C 0.131 3.869 5 H 0.041 0.959 6 C -0.157 4.157 7 C 0.150 3.850 8 N -0.601 5.601 9 C -0.220 4.220 10 H 0.079 0.921 11 C -0.007 4.007 12 N -0.918 5.918 13 Si 0.912 3.088 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.285 1.285 17 C 0.506 3.494 18 O -0.533 6.533 19 C 0.103 3.897 20 N -0.714 5.714 21 C 0.591 3.409 22 O -0.539 6.539 23 C -0.237 4.237 24 C -0.165 4.165 25 C -0.042 4.042 26 O -0.174 6.174 27 C 0.028 3.972 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.048 0.952 35 H 0.021 0.979 36 H 0.073 0.927 37 H 0.254 0.746 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.410 0.590 41 H 0.160 0.840 42 H 0.209 0.791 43 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.709 -23.636 4.520 24.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.336 5.336 3 C -0.009 4.009 4 C 0.022 3.978 5 H 0.058 0.942 6 C -0.195 4.195 7 C 0.024 3.976 8 N -0.327 5.327 9 C -0.347 4.347 10 H 0.097 0.903 11 C -0.203 4.203 12 N -0.565 5.565 13 Si 0.742 3.258 14 H -0.210 1.210 15 H -0.215 1.215 16 H -0.212 1.212 17 C 0.292 3.708 18 O -0.410 6.410 19 C -0.024 4.024 20 N -0.369 5.369 21 C 0.378 3.622 22 O -0.417 6.417 23 C -0.242 4.242 24 C -0.184 4.184 25 C -0.108 4.108 26 O -0.068 6.068 27 C -0.043 4.043 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.067 0.933 35 H 0.039 0.961 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.248 0.752 41 H 0.178 0.822 42 H 0.226 0.774 43 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -4.529 -23.449 4.602 24.322 hybrid contribution -0.125 1.216 0.357 1.273 sum -4.654 -22.234 4.959 23.250 Atomic orbital electron populations 1.21887 0.79487 1.03860 1.01866 1.47812 1.07088 1.06409 1.72301 1.21995 0.97612 0.81950 0.99367 1.22427 0.95268 0.87130 0.92941 0.94204 1.23659 0.98663 0.97455 0.99759 1.22093 0.98654 0.87825 0.88996 1.45600 1.51004 1.08353 1.27725 1.18819 1.21015 0.88245 1.06649 0.90331 1.24792 0.99226 0.98192 0.98141 1.69822 1.29331 1.30834 1.26462 0.86211 0.77294 0.83039 0.79255 1.21040 1.21548 1.21211 1.20338 0.88133 0.85336 0.76946 1.90696 1.13515 1.86835 1.49977 1.21126 0.92162 0.84384 1.04731 1.45552 1.11226 1.04476 1.75628 1.17204 0.87522 0.81468 0.75971 1.90787 1.15994 1.84762 1.50184 1.21452 0.93212 0.94665 1.14847 1.22778 0.99641 0.90883 1.05105 1.23975 0.85119 0.94937 1.06752 1.83818 1.37359 1.14999 1.70646 1.24606 0.93289 0.86893 0.99475 0.92301 0.90085 0.91205 0.90750 0.89114 0.89991 0.93337 0.96112 0.90899 0.93582 0.88237 0.88378 0.75172 0.82244 0.77426 0.76917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 10.17 59.84 0.61 1.30 16 2 N -0.60 -8.06 2.87 -181.57 -0.52 -8.59 16 3 C 0.11 1.96 5.38 -4.04 -0.02 1.94 16 4 C 0.13 2.62 4.31 -72.39 -0.31 2.30 16 5 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 6 C -0.16 -3.15 8.02 -26.16 -0.21 -3.36 16 7 C 0.15 3.62 7.44 -8.44 -0.06 3.56 16 8 N -0.60 -15.24 3.65 -176.79 -0.65 -15.89 16 9 C -0.22 -6.04 10.55 -15.06 -0.16 -6.20 16 10 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 11 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 12 N -0.92 -27.35 11.47 55.49 0.64 -26.71 16 13 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 17 C 0.51 6.78 7.74 -10.98 -0.09 6.69 16 18 O -0.53 -8.69 15.17 5.56 0.08 -8.61 16 19 C 0.10 1.10 4.77 -5.20 -0.02 1.08 16 20 N -0.71 -7.70 5.52 -62.58 -0.35 -8.05 16 21 C 0.59 7.07 7.81 -12.54 -0.10 6.98 16 22 O -0.54 -8.07 16.98 5.27 0.09 -7.98 16 23 C -0.24 -2.38 6.31 -103.28 -0.65 -3.03 16 24 C -0.16 -1.43 11.01 -37.45 -0.41 -1.84 16 25 C -0.04 -0.28 12.03 29.30 0.35 0.08 16 26 O -0.17 -1.38 10.52 7.64 0.08 -1.30 16 27 C 0.03 0.22 11.61 30.07 0.35 0.57 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.80 8.03 -51.93 -0.42 0.38 16 30 H 0.07 0.53 6.66 -51.93 -0.35 0.18 16 31 H 0.07 1.28 8.11 -51.93 -0.42 0.86 16 32 H 0.09 1.77 7.01 -51.93 -0.36 1.40 16 33 H 0.08 1.73 7.94 -51.93 -0.41 1.31 16 34 H 0.05 0.87 8.14 -51.92 -0.42 0.45 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 1.95 7.05 -51.93 -0.37 1.59 16 37 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.10 0.99 7.41 -51.93 -0.38 0.60 16 39 H 0.10 0.94 8.11 -51.93 -0.42 0.52 16 40 H 0.41 4.08 6.41 -40.82 -0.26 3.82 16 41 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 42 H 0.21 0.53 8.06 -52.49 -0.42 0.11 16 43 H 0.21 1.04 7.47 -52.49 -0.39 0.65 16 LS Contribution 368.76 15.07 5.56 5.56 Total: -1.00 -35.54 368.76 -6.78 -42.32 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -5.87 Total: 2.54 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: -0.82 Total: 9.78 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: -0.88 Total: -59.23 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: 0.25 Total: -17.89 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.54 -6.78 -42.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234479003.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.509 kcal (2) G-P(sol) polarization free energy of solvation -35.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds