Wall clock time and date at job start Tue Mar 31 2020 13:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 119.99583 * 2 1 4 4 C 1.52997 * 109.47356 * 275.35933 * 3 2 1 5 5 H 1.09001 * 112.73899 * 44.43022 * 4 3 2 6 6 C 1.53490 * 113.47063 * 273.68416 * 4 3 2 7 7 C 1.53613 * 83.30938 * 219.16633 * 6 4 3 8 8 N 1.47067 * 113.47061 * 175.16962 * 4 3 2 9 9 C 1.36941 * 136.05625 * 321.94159 * 8 4 3 10 10 H 1.08002 * 119.99890 * 358.21345 * 9 8 4 11 11 C 1.38812 * 119.99871 * 178.20710 * 9 8 4 12 12 N 1.31616 * 120.00225 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99925 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47075 * 60.00188 * 13 11 9 15 15 H 1.48503 * 109.47099 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46953 * 300.00184 * 13 11 9 17 17 C 1.34777 * 120.00163 * 180.02562 * 2 1 3 18 18 O 1.21282 * 119.99984 * 179.97438 * 17 2 1 19 19 C 1.50702 * 120.00051 * 359.97438 * 17 2 1 20 20 N 1.46493 * 109.47085 * 180.02562 * 19 17 2 21 21 C 1.34778 * 119.99860 * 179.97438 * 20 19 17 22 22 O 1.21608 * 119.99984 * 0.02562 * 21 20 19 23 23 C 1.47384 * 119.99865 * 179.97438 * 21 20 19 24 24 C 1.47018 * 127.19202 * 180.26285 * 23 21 20 25 25 C 1.34180 * 105.95428 * 180.15083 * 24 23 21 26 26 O 1.34213 * 109.12453 * 359.60779 * 25 24 23 27 27 C 1.33659 * 110.90600 * 0.26302 * 26 25 24 28 28 H 1.09005 * 109.46819 * 264.80116 * 1 2 3 29 29 H 1.08993 * 109.47535 * 24.80085 * 1 2 3 30 30 H 1.09006 * 109.47342 * 144.80433 * 1 2 3 31 31 H 1.09002 * 109.47196 * 35.36723 * 3 2 1 32 32 H 1.09004 * 109.46724 * 155.36652 * 3 2 1 33 33 H 1.08995 * 114.21174 * 332.74087 * 6 4 3 34 34 H 1.09009 * 114.20483 * 105.56396 * 6 4 3 35 35 H 1.08995 * 113.41793 * 271.24857 * 7 6 4 36 36 H 1.08998 * 113.55985 * 140.82167 * 7 6 4 37 37 H 0.96995 * 120.00575 * 179.97438 * 12 11 9 38 38 H 1.09002 * 109.47128 * 60.00097 * 19 17 2 39 39 H 1.08999 * 109.47013 * 300.00083 * 19 17 2 40 40 H 0.97006 * 120.00402 * 359.97438 * 20 19 17 41 41 H 1.08001 * 127.02078 * 0.02958 * 24 23 21 42 42 H 1.08000 * 125.43640 * 179.86632 * 25 24 23 43 43 H 1.08000 * 125.79920 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3357 1.7779 -1.4361 5 1 1.4092 1.6934 -2.0042 6 6 3.5574 1.2095 -2.1712 7 6 3.6552 2.6344 -2.7367 8 7 2.9605 3.1060 -1.5292 9 6 2.9158 4.2694 -0.8083 10 1 2.2718 4.3450 0.0555 11 6 3.6981 5.3514 -1.1876 12 7 4.4826 5.2594 -2.2405 13 14 3.6377 6.9382 -0.2038 14 1 4.0528 6.6687 1.1963 15 1 4.5595 7.9321 -0.8102 16 1 2.2531 7.4751 -0.2149 17 6 2.1389 -1.1672 -0.0005 18 8 3.3517 -1.1671 -0.0010 19 6 1.3854 -2.4723 -0.0005 20 7 2.3374 -3.5858 -0.0005 21 6 1.8882 -4.8565 0.0000 22 8 0.6926 -5.0787 0.0000 23 6 2.8460 -5.9767 -0.0006 24 6 2.5334 -7.4132 -0.0055 25 6 3.7156 -8.0479 -0.0007 26 8 4.7028 -7.1387 -0.0021 27 6 4.2078 -5.8972 -0.0020 28 1 -0.3633 -0.0931 1.0235 29 1 -0.3634 0.9328 -0.4310 30 1 -0.3634 -0.8398 -0.5923 31 1 1.6532 2.0024 0.5948 32 1 3.1881 1.1164 0.4284 33 1 4.3831 0.9307 -1.5167 34 1 3.3178 0.4487 -2.9143 35 1 3.0807 2.7778 -3.6517 36 1 4.6784 3.0008 -2.8197 37 1 5.0290 6.0156 -2.5058 38 1 0.7584 -2.5299 -0.8903 39 1 0.7591 -2.5303 0.8897 40 1 3.2912 -3.4085 -0.0009 41 1 1.5525 -7.8652 -0.0099 42 1 3.8510 -9.1194 -0.0004 43 1 4.7875 -4.9859 -0.0034 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234479003.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:02 Heat of formation + Delta-G solvation = -9.301212 kcal Electronic energy + Delta-G solvation = -26427.066649 eV Core-core repulsion = 22475.747203 eV Total energy + Delta-G solvation = -3951.319446 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.46953 -41.39871 -40.33127 -39.54011 -36.60150 -35.60049 -34.26724 -33.83882 -31.32693 -30.37287 -29.90319 -28.46124 -27.16929 -25.39899 -24.62932 -23.55909 -22.38592 -21.26115 -21.03757 -20.48326 -19.42980 -18.72411 -17.94691 -17.59195 -17.31708 -17.07876 -16.91330 -16.73662 -16.33158 -15.96913 -15.80875 -15.59662 -15.26414 -14.71834 -14.30550 -14.07395 -13.96677 -13.81764 -13.80964 -13.58655 -13.40815 -13.31587 -13.07621 -12.94141 -12.62267 -12.51177 -12.27093 -11.79417 -11.68195 -11.31634 -11.24498 -10.96263 -10.86312 -10.82140 -10.30683 -9.73699 -9.64461 -8.91157 -7.88285 -5.22817 0.33171 1.14343 1.45526 1.48849 1.50239 1.55332 1.63729 2.06700 2.27373 2.28745 2.49717 3.28224 3.35285 3.52054 3.63460 3.78711 3.87330 4.09493 4.21295 4.23146 4.31191 4.34777 4.39722 4.44328 4.57866 4.66678 4.77111 4.80755 4.85960 4.95340 5.00962 5.01647 5.07547 5.16106 5.22320 5.35475 5.42905 5.52991 5.73049 5.94448 5.99766 6.33248 6.40222 6.90538 7.02394 7.07748 7.61717 8.62324 9.29132 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.025448 B = 0.002319 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.017415 B =12069.026163 C =12638.137935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.602 5.602 3 C 0.130 3.870 4 C 0.137 3.863 5 H 0.056 0.944 6 C -0.131 4.131 7 C 0.144 3.856 8 N -0.630 5.630 9 C -0.222 4.222 10 H 0.091 0.909 11 C -0.072 4.072 12 N -0.956 5.956 13 Si 0.980 3.020 14 H -0.275 1.275 15 H -0.298 1.298 16 H -0.275 1.275 17 C 0.506 3.494 18 O -0.566 6.566 19 C 0.110 3.890 20 N -0.710 5.710 21 C 0.592 3.408 22 O -0.576 6.576 23 C -0.270 4.270 24 C -0.193 4.193 25 C -0.025 4.025 26 O -0.178 6.178 27 C 0.041 3.959 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.018 0.982 36 H 0.037 0.963 37 H 0.247 0.753 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.415 0.585 41 H 0.160 0.840 42 H 0.248 0.752 43 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.753 -25.257 5.483 26.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.334 5.334 3 C 0.005 3.995 4 C 0.030 3.970 5 H 0.073 0.927 6 C -0.170 4.170 7 C 0.018 3.982 8 N -0.356 5.356 9 C -0.350 4.350 10 H 0.108 0.892 11 C -0.265 4.265 12 N -0.605 5.605 13 Si 0.808 3.192 14 H -0.201 1.201 15 H -0.224 1.224 16 H -0.201 1.201 17 C 0.295 3.705 18 O -0.445 6.445 19 C -0.016 4.016 20 N -0.364 5.364 21 C 0.381 3.619 22 O -0.457 6.457 23 C -0.274 4.274 24 C -0.213 4.213 25 C -0.090 4.090 26 O -0.073 6.073 27 C -0.029 4.029 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.035 0.965 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.253 0.747 41 H 0.177 0.823 42 H 0.264 0.736 43 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -5.612 -25.104 5.585 26.323 hybrid contribution 0.193 1.620 0.042 1.632 sum -5.419 -23.484 5.626 24.749 Atomic orbital electron populations 1.22168 0.76762 1.04871 1.03777 1.47793 1.08606 1.04929 1.72100 1.21489 0.97104 0.83834 0.97048 1.22519 0.95316 0.84271 0.94881 0.92683 1.23396 0.98351 0.95640 0.99567 1.22068 0.96596 0.90417 0.89113 1.45934 1.52037 1.09623 1.28005 1.19277 1.20101 0.88899 1.06738 0.89169 1.25678 0.99572 1.01695 0.99541 1.70031 1.30697 1.31316 1.28482 0.85134 0.77366 0.78809 0.77924 1.20099 1.22442 1.20071 1.20767 0.87818 0.86021 0.75942 1.90688 1.15105 1.87342 1.51374 1.21140 0.91834 0.82601 1.06072 1.45550 1.11515 1.04286 1.75095 1.17455 0.87345 0.81972 0.75120 1.90757 1.17464 1.85264 1.52229 1.21511 0.93932 0.94781 1.17223 1.22963 1.00652 0.90692 1.06955 1.24673 0.83980 0.96193 1.04155 1.83855 1.37809 1.15226 1.70394 1.25015 0.92711 0.87659 0.97550 0.90244 0.90278 0.88759 0.90565 0.91590 0.91154 0.90583 0.96453 0.94456 0.94417 0.86912 0.86847 0.74677 0.82260 0.73594 0.74589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.04 10.17 127.77 1.30 2.34 16 2 N -0.60 -14.75 2.87 -846.75 -2.43 -17.18 16 3 C 0.13 4.32 5.38 86.38 0.47 4.78 16 4 C 0.14 5.34 4.31 41.79 0.18 5.52 16 5 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 6 C -0.13 -5.20 8.02 30.97 0.25 -4.95 16 7 C 0.14 7.09 7.44 83.22 0.62 7.71 16 8 N -0.63 -32.10 3.65 -713.23 -2.61 -34.71 16 9 C -0.22 -12.22 10.55 84.03 0.89 -11.33 16 10 H 0.09 4.61 7.83 -2.91 -0.02 4.58 16 11 C -0.07 -4.12 5.50 84.86 0.47 -3.66 16 12 N -0.96 -58.72 11.47 21.65 0.25 -58.47 16 13 Si 0.98 45.57 29.55 68.60 2.03 47.60 16 14 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 15 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 16 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 17 C 0.51 12.59 7.74 87.66 0.68 13.27 16 18 O -0.57 -17.84 15.17 -3.04 -0.05 -17.89 16 19 C 0.11 2.10 4.77 85.63 0.41 2.51 16 20 N -0.71 -14.27 5.52 -470.16 -2.59 -16.86 16 21 C 0.59 13.67 7.81 86.65 0.68 14.35 16 22 O -0.58 -16.93 16.98 -4.06 -0.07 -17.00 16 23 C -0.27 -5.16 6.31 -18.99 -0.12 -5.28 16 24 C -0.19 -3.15 11.01 23.65 0.26 -2.89 16 25 C -0.02 -0.27 12.03 66.89 0.80 0.54 16 26 O -0.18 -2.43 10.52 4.42 0.05 -2.39 16 27 C 0.04 0.57 11.61 67.39 0.78 1.36 16 28 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.08 1.32 8.03 -2.39 -0.02 1.30 16 30 H 0.09 1.06 6.66 -2.38 -0.02 1.04 16 31 H 0.08 2.52 8.11 -2.39 -0.02 2.50 16 32 H 0.07 2.55 7.01 -2.39 -0.02 2.53 16 33 H 0.07 2.97 7.94 -2.39 -0.02 2.95 16 34 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 35 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.04 2.08 7.05 -2.39 -0.02 2.07 16 37 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 38 H 0.11 1.91 7.41 -2.39 -0.02 1.89 16 39 H 0.11 1.87 8.11 -2.39 -0.02 1.85 16 40 H 0.41 7.68 6.41 -92.70 -0.59 7.08 16 41 H 0.16 2.47 8.06 -2.91 -0.02 2.44 16 42 H 0.25 0.40 8.06 -2.91 -0.02 0.38 16 43 H 0.24 1.84 7.47 -2.91 -0.02 1.82 16 Total: -1.00 -78.90 368.76 2.67 -76.22 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 0.44 Total: 16.42 kcal Atomic # 6 Polarization: 16.60 SS G_CDS: 7.66 Total: 24.26 kcal Atomic # 7 Polarization: -119.84 SS G_CDS: -7.38 Total: -127.22 kcal Atomic # 8 Polarization: -37.21 SS G_CDS: -0.07 Total: -37.28 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -78.90 2.67 -76.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234479003.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.921 kcal (2) G-P(sol) polarization free energy of solvation -78.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds