Wall clock time and date at job start Tue Mar 31 2020 12:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42906 * 109.46765 * 2 1 4 4 C 1.35864 * 116.99420 * 180.02562 * 3 2 1 5 5 C 1.38868 * 119.93128 * 359.97438 * 4 3 2 6 6 C 1.37854 * 120.08028 * 179.97438 * 5 4 3 7 7 C 1.39504 * 119.92114 * 0.03117 * 6 5 4 8 8 C 1.48157 * 120.07365 * 180.02562 * 7 6 5 9 9 C 1.39193 * 120.28625 * 236.65969 * 8 7 6 10 10 C 1.38312 * 120.10400 * 179.97438 * 9 8 7 11 11 C 1.38043 * 120.77448 * 0.02562 * 10 9 8 12 12 C 1.39129 * 120.24395 * 0.02562 * 11 10 9 13 13 N 1.38173 * 132.74134 * 179.97438 * 12 11 10 14 14 H 0.97000 * 124.70371 * 359.97144 * 13 12 11 15 15 C 1.35611 * 110.58946 * 179.23290 * 13 12 11 16 16 C 1.38988 * 109.24431 * 0.69421 * 15 13 12 17 17 C 1.40964 * 126.92940 * 179.45026 * 16 15 13 18 18 H 1.07998 * 120.00579 * 202.28082 * 17 16 15 19 19 C 1.39678 * 119.99703 * 22.28432 * 17 16 15 20 20 N 1.31082 * 120.00207 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00022 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47249 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47189 * 120.00082 * 21 19 17 24 24 H 1.48500 * 109.47291 * 240.00094 * 21 19 17 25 25 C 1.40206 * 120.28152 * 56.38301 * 8 7 6 26 26 C 1.39459 * 119.85121 * 359.97438 * 7 6 5 27 27 C 1.37898 * 119.92532 * 359.70143 * 26 7 6 28 28 C 1.50700 * 119.96379 * 180.32031 * 27 26 7 29 29 H 1.09008 * 109.47318 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47507 * 300.00123 * 1 2 3 31 31 H 1.09006 * 109.47167 * 60.00119 * 1 2 3 32 32 H 1.09001 * 109.47184 * 240.00171 * 2 1 3 33 33 H 1.08997 * 109.47123 * 120.00100 * 2 1 3 34 34 H 1.08005 * 119.96501 * 0.02562 * 5 4 3 35 35 H 1.07998 * 120.04088 * 180.02562 * 6 5 4 36 36 H 1.08001 * 119.94131 * 359.95578 * 9 8 7 37 37 H 1.08006 * 119.61010 * 180.02562 * 10 9 8 38 38 H 1.08003 * 119.88145 * 179.97438 * 11 10 9 39 39 H 1.08006 * 125.37316 * 180.09374 * 15 13 12 40 40 H 0.97004 * 120.00155 * 179.97438 * 20 19 17 41 41 H 1.08003 * 120.03969 * 180.02562 * 26 7 6 42 42 H 1.09001 * 109.47077 * 270.25034 * 28 27 26 43 43 H 1.08996 * 109.47116 * 30.25459 * 28 27 26 44 44 H 1.09002 * 109.46820 * 150.25411 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3532 1.5253 -0.0005 5 6 4.1978 0.4230 -0.0005 6 6 5.5649 0.6000 -0.0016 7 6 6.0997 1.8884 -0.0021 8 6 7.5685 2.0826 -0.0038 9 6 8.1791 2.8294 0.9997 10 6 9.5506 3.0078 0.9947 11 6 10.3315 2.4525 0.0010 12 6 9.7455 1.7027 -1.0140 13 7 10.2642 1.0441 -2.1123 14 1 11.2054 1.0150 -2.3452 15 6 9.2768 0.4304 -2.8105 16 6 8.0563 0.6812 -2.1947 17 6 6.7878 0.2319 -2.6143 18 1 5.8976 0.7553 -2.2980 19 6 6.6821 -0.8904 -3.4390 20 7 7.7625 -1.5255 -3.8233 21 14 5.0011 -1.4864 -3.9945 22 1 3.9506 -0.6029 -3.4279 23 1 4.9290 -1.4524 -5.4773 24 1 4.7875 -2.8773 -3.5202 25 6 8.3560 1.5108 -1.0131 26 6 5.2487 2.9933 -0.0020 27 6 3.8821 2.8090 -0.0076 28 6 2.9618 4.0023 -0.0148 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.7831 -0.5743 -0.0005 35 1 6.2211 -0.2577 -0.0020 36 1 7.5808 3.2704 1.7833 37 1 10.0161 3.5883 1.7775 38 1 11.4012 2.6013 0.0109 39 1 9.4158 -0.1525 -3.7091 40 1 7.6891 -2.3051 -4.3958 41 1 5.6595 3.9921 -0.0027 42 1 2.7388 4.2954 1.0111 43 1 3.4451 4.8308 -0.5325 44 1 2.0357 3.7437 -0.5282 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241197502.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:27 Heat of formation + Delta-G solvation = 25.211369 kcal Electronic energy + Delta-G solvation = -26700.141200 eV Core-core repulsion = 23161.167595 eV Total energy + Delta-G solvation = -3538.973605 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.02862 -39.51344 -37.31440 -35.62322 -33.58556 -32.63836 -31.49078 -31.03149 -29.33296 -27.97568 -27.35183 -26.27549 -24.66562 -23.83072 -22.28745 -21.07686 -20.37696 -20.23841 -19.32299 -17.69981 -16.94625 -15.93795 -15.79865 -15.61749 -15.36173 -14.66823 -14.33131 -13.98393 -13.90894 -13.59011 -13.26717 -13.11524 -12.99082 -12.58831 -12.55219 -12.53375 -12.50944 -12.02444 -11.67370 -11.51470 -11.42237 -11.24644 -11.13494 -11.09471 -10.81799 -10.64794 -10.48879 -10.25996 -10.19088 -9.71475 -9.66270 -9.19540 -8.42611 -8.15928 -7.43951 -7.06656 -6.46541 -6.40906 -3.96305 1.71125 1.95952 2.34744 2.63536 3.07117 3.18093 3.25134 3.47872 4.10541 4.22731 4.30555 4.52104 4.80837 4.96668 5.02351 5.24458 5.30243 5.32904 5.46783 5.52253 5.56770 5.70801 5.77761 5.78804 5.83893 5.94692 5.96697 6.00564 6.05682 6.12246 6.14371 6.35315 6.45607 6.61074 6.63877 6.79604 6.93148 6.96379 7.15811 7.19177 7.25566 7.29276 7.41849 7.53126 7.67283 7.76503 7.85075 8.06462 8.35672 8.69695 9.02085 9.15968 9.21775 10.56388 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010480 B = 0.005757 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.107815 B = 4862.885828 C = 7073.943866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.318 6.318 4 C 0.119 3.881 5 C -0.209 4.209 6 C -0.028 4.028 7 C -0.056 4.056 8 C 0.009 3.991 9 C -0.173 4.173 10 C -0.116 4.116 11 C -0.151 4.151 12 C 0.085 3.915 13 N -0.592 5.592 14 H 0.394 0.606 15 C -0.075 4.075 16 C 0.025 3.975 17 C -0.419 4.419 18 H 0.079 0.921 19 C 0.061 3.939 20 N -0.838 5.838 21 Si 0.897 3.103 22 H -0.262 1.262 23 H -0.279 1.279 24 H -0.279 1.279 25 C -0.111 4.111 26 C -0.073 4.073 27 C -0.131 4.131 28 C -0.096 4.096 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.120 0.880 35 H 0.130 0.870 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.100 0.900 39 H 0.174 0.826 40 H 0.270 0.730 41 H 0.123 0.877 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.447 3.921 6.766 10.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.233 6.233 4 C 0.074 3.926 5 C -0.228 4.228 6 C -0.046 4.046 7 C -0.057 4.057 8 C 0.008 3.992 9 C -0.193 4.193 10 C -0.136 4.136 11 C -0.172 4.172 12 C -0.026 4.026 13 N -0.194 5.194 14 H 0.227 0.773 15 C -0.199 4.199 16 C 0.020 3.980 17 C -0.453 4.453 18 H 0.097 0.903 19 C -0.148 4.148 20 N -0.469 5.469 21 Si 0.723 3.277 22 H -0.186 1.186 23 H -0.204 1.204 24 H -0.204 1.204 25 C -0.118 4.118 26 C -0.091 4.091 27 C -0.132 4.132 28 C -0.153 4.153 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.138 0.862 35 H 0.148 0.852 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.118 0.882 39 H 0.191 0.809 40 H 0.080 0.920 41 H 0.141 0.859 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.513 3.796 6.496 9.951 hybrid contribution -0.026 -0.874 -0.581 1.050 sum -6.538 2.922 5.914 9.288 Atomic orbital electron populations 1.21753 0.93218 1.02494 1.03187 1.22710 0.95344 0.82724 1.01474 1.85968 1.19660 1.28473 1.89159 1.18750 0.81643 0.93674 0.98506 1.21049 0.94413 0.97378 1.09981 1.21019 0.93649 0.97079 0.92860 1.18642 0.92313 0.92715 1.02000 1.18012 0.90445 0.96697 0.94014 1.20591 0.94343 1.04338 1.00018 1.20310 0.93542 1.01495 0.98224 1.19838 0.98088 1.03361 0.95952 1.18145 0.93431 0.99708 0.91309 1.41454 1.08572 1.46198 1.23141 0.77280 1.22674 0.86624 1.08930 1.01677 1.17990 0.93170 0.96243 0.90615 1.18839 0.92471 1.09077 1.24870 0.90333 1.25563 0.97361 0.96279 0.95625 1.69710 1.28764 1.17863 1.30558 0.86392 0.83585 0.78856 0.78836 1.18572 1.20435 1.20440 1.19461 0.91325 1.03593 0.97426 1.20846 0.91117 0.98341 0.98841 1.18960 0.93902 0.92118 1.08208 1.20503 0.98405 0.94971 1.01440 0.90711 0.91752 0.91698 0.92139 0.92240 0.86164 0.85208 0.87505 0.87443 0.88170 0.80925 0.91988 0.85877 0.92172 0.92115 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.28 37.16 0.38 -1.08 16 2 C 0.05 0.68 5.46 37.16 0.20 0.89 16 3 O -0.32 -5.08 9.17 -19.31 -0.18 -5.26 16 4 C 0.12 2.11 6.66 -39.13 -0.26 1.85 16 5 C -0.21 -3.87 9.02 -39.49 -0.36 -4.22 16 6 C -0.03 -0.57 6.69 -39.25 -0.26 -0.83 16 7 C -0.06 -1.15 4.62 -104.90 -0.48 -1.63 16 8 C 0.01 0.19 5.41 -104.73 -0.57 -0.38 16 9 C -0.17 -3.25 9.63 -39.20 -0.38 -3.62 16 10 C -0.12 -2.06 10.00 -39.63 -0.40 -2.46 16 11 C -0.15 -2.84 10.06 -39.32 -0.40 -3.24 16 12 C 0.08 1.86 7.23 -83.91 -0.61 1.26 16 13 N -0.59 -12.65 5.99 -9.80 -0.06 -12.71 16 14 H 0.39 6.87 8.96 -40.82 -0.37 6.51 16 15 C -0.08 -1.86 10.77 -15.60 -0.17 -2.03 16 16 C 0.03 0.65 5.96 -104.83 -0.62 0.03 16 17 C -0.42 -11.05 7.52 -38.01 -0.29 -11.34 16 18 H 0.08 2.08 5.60 -52.49 -0.29 1.79 16 19 C 0.06 1.58 5.47 -17.33 -0.09 1.48 16 20 N -0.84 -21.85 10.83 55.54 0.60 -21.25 16 21 Si 0.90 19.77 29.56 -169.99 -5.02 14.74 16 22 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 C -0.11 -2.66 6.07 -104.64 -0.63 -3.30 16 26 C -0.07 -1.34 9.27 -39.25 -0.36 -1.70 16 27 C -0.13 -2.27 5.89 -104.52 -0.62 -2.88 16 28 C -0.10 -1.35 9.78 36.01 0.35 -1.00 16 29 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.82 7.65 -51.93 -0.40 0.42 16 33 H 0.06 0.70 7.65 -51.93 -0.40 0.31 16 34 H 0.12 1.99 6.28 -52.48 -0.33 1.66 16 35 H 0.13 2.81 7.80 -52.49 -0.41 2.40 16 36 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 37 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 38 H 0.10 1.61 8.06 -52.48 -0.42 1.18 16 39 H 0.17 4.42 6.40 -52.48 -0.34 4.08 16 40 H 0.27 6.57 8.30 -40.82 -0.34 6.23 16 41 H 0.12 2.03 8.06 -52.48 -0.42 1.60 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 44 H 0.06 0.90 7.52 -51.93 -0.39 0.50 16 LS Contribution 361.70 15.07 5.45 5.45 Total: -1.00 -28.92 361.70 -10.62 -39.54 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -5.86 Total: 13.69 kcal Atomic # 6 Polarization: -28.65 SS G_CDS: -5.56 Total: -34.21 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.54 Total: -33.96 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: -0.18 Total: -5.26 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.92 -10.62 -39.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241197502.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.748 kcal (2) G-P(sol) polarization free energy of solvation -28.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds