Wall clock time and date at job start Tue Mar 31 2020 12:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42906 * 109.46765 * 2 1 4 4 C 1.35864 * 116.99420 * 180.02562 * 3 2 1 5 5 C 1.38868 * 119.93128 * 359.97438 * 4 3 2 6 6 C 1.37854 * 120.08028 * 179.97438 * 5 4 3 7 7 C 1.39504 * 119.92114 * 0.03117 * 6 5 4 8 8 C 1.48157 * 120.07365 * 180.02562 * 7 6 5 9 9 C 1.39193 * 120.28625 * 236.65969 * 8 7 6 10 10 C 1.38312 * 120.10400 * 179.97438 * 9 8 7 11 11 C 1.38043 * 120.77448 * 0.02562 * 10 9 8 12 12 C 1.39129 * 120.24395 * 0.02562 * 11 10 9 13 13 N 1.38173 * 132.74134 * 179.97438 * 12 11 10 14 14 H 0.97000 * 124.70371 * 359.97144 * 13 12 11 15 15 C 1.35611 * 110.58946 * 179.23290 * 13 12 11 16 16 C 1.38988 * 109.24431 * 0.69421 * 15 13 12 17 17 C 1.40964 * 126.92940 * 179.45026 * 16 15 13 18 18 H 1.07998 * 120.00579 * 202.28082 * 17 16 15 19 19 C 1.39678 * 119.99703 * 22.28432 * 17 16 15 20 20 N 1.31082 * 120.00207 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00022 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47249 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47189 * 120.00082 * 21 19 17 24 24 H 1.48500 * 109.47291 * 240.00094 * 21 19 17 25 25 C 1.40206 * 120.28152 * 56.38301 * 8 7 6 26 26 C 1.39459 * 119.85121 * 359.97438 * 7 6 5 27 27 C 1.37898 * 119.92532 * 359.70143 * 26 7 6 28 28 C 1.50700 * 119.96379 * 180.32031 * 27 26 7 29 29 H 1.09008 * 109.47318 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47507 * 300.00123 * 1 2 3 31 31 H 1.09006 * 109.47167 * 60.00119 * 1 2 3 32 32 H 1.09001 * 109.47184 * 240.00171 * 2 1 3 33 33 H 1.08997 * 109.47123 * 120.00100 * 2 1 3 34 34 H 1.08005 * 119.96501 * 0.02562 * 5 4 3 35 35 H 1.07998 * 120.04088 * 180.02562 * 6 5 4 36 36 H 1.08001 * 119.94131 * 359.95578 * 9 8 7 37 37 H 1.08006 * 119.61010 * 180.02562 * 10 9 8 38 38 H 1.08003 * 119.88145 * 179.97438 * 11 10 9 39 39 H 1.08006 * 125.37316 * 180.09374 * 15 13 12 40 40 H 0.97004 * 120.00155 * 179.97438 * 20 19 17 41 41 H 1.08003 * 120.03969 * 180.02562 * 26 7 6 42 42 H 1.09001 * 109.47077 * 270.25034 * 28 27 26 43 43 H 1.08996 * 109.47116 * 30.25459 * 28 27 26 44 44 H 1.09002 * 109.46820 * 150.25411 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3532 1.5253 -0.0005 5 6 4.1978 0.4230 -0.0005 6 6 5.5649 0.6000 -0.0016 7 6 6.0997 1.8884 -0.0021 8 6 7.5685 2.0826 -0.0038 9 6 8.1791 2.8294 0.9997 10 6 9.5506 3.0078 0.9947 11 6 10.3315 2.4525 0.0010 12 6 9.7455 1.7027 -1.0140 13 7 10.2642 1.0441 -2.1123 14 1 11.2054 1.0150 -2.3452 15 6 9.2768 0.4304 -2.8105 16 6 8.0563 0.6812 -2.1947 17 6 6.7878 0.2319 -2.6143 18 1 5.8976 0.7553 -2.2980 19 6 6.6821 -0.8904 -3.4390 20 7 7.7625 -1.5255 -3.8233 21 14 5.0011 -1.4864 -3.9945 22 1 3.9506 -0.6029 -3.4279 23 1 4.9290 -1.4524 -5.4773 24 1 4.7875 -2.8773 -3.5202 25 6 8.3560 1.5108 -1.0131 26 6 5.2487 2.9933 -0.0020 27 6 3.8821 2.8090 -0.0076 28 6 2.9618 4.0023 -0.0148 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.7831 -0.5743 -0.0005 35 1 6.2211 -0.2577 -0.0020 36 1 7.5808 3.2704 1.7833 37 1 10.0161 3.5883 1.7775 38 1 11.4012 2.6013 0.0109 39 1 9.4158 -0.1525 -3.7091 40 1 7.6891 -2.3051 -4.3958 41 1 5.6595 3.9921 -0.0027 42 1 2.7388 4.2954 1.0111 43 1 3.4451 4.8308 -0.5325 44 1 2.0357 3.7437 -0.5282 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241197502.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:26 Heat of formation + Delta-G solvation = 12.156826 kcal Electronic energy + Delta-G solvation = -26700.707288 eV Core-core repulsion = 23161.167595 eV Total energy + Delta-G solvation = -3539.539692 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.56580 -40.95568 -38.68138 -37.17042 -35.38516 -34.04580 -32.76549 -32.30231 -30.98266 -29.57875 -28.93276 -27.59178 -26.46926 -24.97757 -23.74697 -22.47412 -21.89661 -21.78343 -21.07268 -19.00054 -18.57670 -17.69251 -17.06613 -17.02074 -16.91603 -16.26259 -15.96427 -15.44037 -15.26271 -14.90737 -14.77420 -14.53808 -14.41880 -14.32155 -13.94555 -13.55395 -13.49990 -13.27201 -13.17915 -13.08418 -12.95822 -12.68435 -12.59314 -12.48604 -12.43576 -12.09168 -11.96303 -11.77170 -11.58197 -11.38876 -11.34885 -11.03975 -10.05555 -9.60571 -8.94309 -8.70630 -8.37434 -8.13115 -5.91110 0.20162 0.52090 0.82909 1.06001 1.30712 1.35071 1.47911 2.26141 2.31030 2.35638 2.83073 2.90950 3.18461 3.62915 3.91102 3.94066 3.95576 4.03955 4.20885 4.32587 4.35066 4.43512 4.47029 4.51571 4.65806 4.69994 4.77409 4.85211 4.90709 4.91286 4.94579 5.02064 5.09379 5.20149 5.20688 5.36322 5.40811 5.44614 5.50946 5.60187 5.65405 5.77612 5.84681 5.93733 6.01464 6.11592 6.30331 6.51911 6.59970 6.84304 7.20467 7.25820 7.41086 8.66439 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010480 B = 0.005757 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.107815 B = 4862.885828 C = 7073.943866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.042 3.958 3 O -0.320 6.320 4 C 0.115 3.885 5 C -0.216 4.216 6 C -0.046 4.046 7 C -0.075 4.075 8 C -0.010 4.010 9 C -0.166 4.166 10 C -0.103 4.103 11 C -0.152 4.152 12 C 0.073 3.927 13 N -0.588 5.588 14 H 0.411 0.589 15 C -0.087 4.087 16 C -0.012 4.012 17 C -0.434 4.434 18 H 0.068 0.932 19 C 0.020 3.980 20 N -0.865 5.865 21 Si 0.955 3.045 22 H -0.265 1.265 23 H -0.273 1.273 24 H -0.270 1.270 25 C -0.149 4.149 26 C -0.076 4.076 27 C -0.133 4.133 28 C -0.093 4.093 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.131 0.869 35 H 0.101 0.899 36 H 0.134 0.866 37 H 0.153 0.847 38 H 0.134 0.866 39 H 0.159 0.841 40 H 0.273 0.727 41 H 0.141 0.859 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.354 5.695 8.585 12.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.033 4.033 3 O -0.235 6.235 4 C 0.070 3.930 5 C -0.234 4.234 6 C -0.064 4.064 7 C -0.075 4.075 8 C -0.010 4.010 9 C -0.186 4.186 10 C -0.122 4.122 11 C -0.173 4.173 12 C -0.037 4.037 13 N -0.191 5.191 14 H 0.247 0.753 15 C -0.212 4.212 16 C -0.017 4.017 17 C -0.468 4.468 18 H 0.086 0.914 19 C -0.187 4.187 20 N -0.498 5.498 21 Si 0.779 3.221 22 H -0.189 1.189 23 H -0.199 1.199 24 H -0.195 1.195 25 C -0.155 4.155 26 C -0.094 4.094 27 C -0.134 4.134 28 C -0.149 4.149 29 H 0.116 0.884 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.149 0.851 35 H 0.119 0.881 36 H 0.151 0.849 37 H 0.171 0.829 38 H 0.152 0.848 39 H 0.176 0.824 40 H 0.083 0.917 41 H 0.159 0.841 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.400 5.579 8.325 12.458 hybrid contribution 0.272 -1.333 -0.995 1.686 sum -7.128 4.246 7.330 11.071 Atomic orbital electron populations 1.21771 0.90558 1.04135 1.03496 1.23026 0.97450 0.81393 1.01466 1.85979 1.18350 1.30362 1.88790 1.18894 0.82478 0.93699 0.97941 1.21170 0.93843 0.98515 1.09910 1.20831 0.94150 0.96524 0.94885 1.18755 0.92386 0.93257 1.03128 1.18317 0.91114 0.97288 0.94307 1.20996 0.95392 1.02897 0.99347 1.20864 0.92984 1.00078 0.98295 1.20274 1.00071 1.02124 0.94860 1.18579 0.93095 1.00071 0.91949 1.41265 1.08889 1.46032 1.22943 0.75331 1.22426 0.87535 1.09437 1.01767 1.18354 0.93544 0.97648 0.92199 1.18898 0.92477 1.09728 1.25684 0.91416 1.26231 1.00449 0.96309 0.95679 1.69792 1.30191 1.18392 1.31414 0.85519 0.79690 0.78493 0.78422 1.18921 1.19880 1.19531 1.19716 0.92971 1.04824 0.98029 1.21033 0.91402 0.98419 0.98495 1.19391 0.94168 0.93240 1.06596 1.20552 0.97631 0.93830 1.02894 0.88415 0.90943 0.91850 0.93160 0.91296 0.85105 0.88053 0.84854 0.82932 0.84788 0.82425 0.91718 0.84114 0.90217 0.90712 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 10.28 71.98 0.74 -1.75 16 2 C 0.04 1.02 5.46 71.98 0.39 1.42 16 3 O -0.32 -9.84 9.17 -92.02 -0.84 -10.69 16 4 C 0.11 4.04 6.66 22.57 0.15 4.19 16 5 C -0.22 -8.16 9.02 22.33 0.20 -7.96 16 6 C -0.05 -1.95 6.69 22.48 0.15 -1.80 16 7 C -0.07 -3.11 4.62 -20.04 -0.09 -3.20 16 8 C -0.01 -0.42 5.41 -19.93 -0.11 -0.53 16 9 C -0.17 -5.86 9.63 22.52 0.22 -5.64 16 10 C -0.10 -3.25 10.00 22.24 0.22 -3.03 16 11 C -0.15 -5.31 10.06 22.44 0.23 -5.09 16 12 C 0.07 3.20 7.23 38.85 0.28 3.48 16 13 N -0.59 -25.59 5.99 -184.93 -1.11 -26.70 16 14 H 0.41 14.41 8.96 -92.71 -0.83 13.58 16 15 C -0.09 -4.53 10.77 84.29 0.91 -3.62 16 16 C -0.01 -0.65 5.96 -20.00 -0.12 -0.77 16 17 C -0.43 -24.17 7.52 23.29 0.18 -23.99 16 18 H 0.07 3.80 5.60 -2.91 -0.02 3.78 16 19 C 0.02 1.06 5.47 85.15 0.47 1.53 16 20 N -0.87 -47.31 10.83 21.79 0.24 -47.07 16 21 Si 0.95 42.05 29.56 68.60 2.03 44.07 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 23 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 25 C -0.15 -7.33 6.07 -19.88 -0.12 -7.45 16 26 C -0.08 -2.70 9.27 22.48 0.21 -2.49 16 27 C -0.13 -4.44 5.89 -19.80 -0.12 -4.56 16 28 C -0.09 -2.35 9.78 71.24 0.70 -1.65 16 29 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 31 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.05 1.34 7.65 -2.39 -0.02 1.32 16 33 H 0.07 1.55 7.65 -2.39 -0.02 1.54 16 34 H 0.13 4.46 6.28 -2.91 -0.02 4.44 16 35 H 0.10 4.79 7.80 -2.91 -0.02 4.77 16 36 H 0.13 3.94 8.06 -2.91 -0.02 3.92 16 37 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 38 H 0.13 3.75 8.06 -2.91 -0.02 3.72 16 39 H 0.16 8.59 6.40 -2.91 -0.02 8.57 16 40 H 0.27 13.84 8.30 -92.71 -0.77 13.07 16 41 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 42 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.07 1.69 8.09 -2.39 -0.02 1.67 16 44 H 0.06 1.65 7.52 -2.39 -0.02 1.63 16 Total: -1.00 -65.87 361.70 4.99 -60.88 By element: Atomic # 1 Polarization: 42.20 SS G_CDS: 0.20 Total: 42.40 kcal Atomic # 6 Polarization: -67.38 SS G_CDS: 4.48 Total: -62.90 kcal Atomic # 7 Polarization: -72.90 SS G_CDS: -0.87 Total: -73.77 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -0.84 Total: -10.69 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Total: -65.87 4.99 -60.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241197502.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.037 kcal (2) G-P(sol) polarization free energy of solvation -65.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds