Wall clock time and date at job start Tue Mar 31 2020 12:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42901 * 109.46526 * 2 1 4 4 C 1.35812 * 116.99506 * 179.97438 * 3 2 1 5 5 C 1.38967 * 119.91208 * 179.97438 * 4 3 2 6 6 C 1.37774 * 120.08418 * 180.02562 * 5 4 3 7 7 C 1.50702 * 120.04205 * 179.97438 * 6 5 4 8 8 C 1.39677 * 119.91217 * 359.97438 * 6 5 4 9 9 C 1.47925 * 120.08348 * 179.97438 * 8 6 5 10 10 C 1.40035 * 119.50174 * 294.97655 * 9 8 6 11 11 C 1.35966 * 121.18674 * 179.68623 * 10 9 8 12 12 C 1.41062 * 120.11623 * 0.61541 * 11 10 9 13 13 C 1.40407 * 120.48610 * 179.68668 * 12 11 10 14 14 H 1.08000 * 119.99972 * 205.24716 * 13 12 11 15 15 C 1.40280 * 120.00189 * 25.25159 * 13 12 11 16 16 N 1.30656 * 119.99548 * 17.06157 * 15 13 12 17 17 Si 1.86791 * 119.99896 * 197.06035 * 15 13 12 18 18 H 1.48505 * 109.47318 * 265.17832 * 17 15 13 19 19 H 1.48497 * 109.47593 * 25.18276 * 17 15 13 20 20 H 1.48502 * 109.46856 * 145.18000 * 17 15 13 21 21 C 1.46661 * 119.02572 * 359.42207 * 12 11 10 22 22 C 1.43201 * 120.56079 * 180.29753 * 21 12 11 23 23 N 9.61641 * 140.35006 * 329.50445 * 3 1 2 24 24 C 1.39059 * 118.87316 * 0.26627 * 21 12 11 25 25 C 1.39682 * 119.83389 * 0.24876 * 8 6 5 26 26 C 1.50694 * 120.04671 * 179.74823 * 25 8 6 27 27 C 1.37772 * 119.91081 * 359.49300 * 25 8 6 28 28 H 1.08996 * 109.46979 * 299.99841 * 1 2 3 29 29 H 1.08994 * 109.46710 * 60.00523 * 1 2 3 30 30 H 1.09004 * 109.46337 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47113 * 239.99671 * 2 1 3 32 32 H 1.09006 * 109.47098 * 119.99471 * 2 1 3 33 33 H 1.07995 * 119.95578 * 0.02562 * 5 4 3 34 34 H 1.09004 * 109.47109 * 269.98092 * 7 6 5 35 35 H 1.08996 * 109.46862 * 29.98093 * 7 6 5 36 36 H 1.08993 * 109.47141 * 149.97806 * 7 6 5 37 37 H 1.07997 * 119.40413 * 359.97438 * 10 9 8 38 38 H 1.08007 * 119.94450 * 180.30768 * 11 10 9 39 39 H 0.97001 * 119.99253 * 180.02562 * 16 15 13 40 40 H 1.08003 * 120.09704 * 179.97438 * 24 21 12 41 41 H 1.09001 * 109.47244 * 89.99744 * 26 25 8 42 42 H 1.08992 * 109.47671 * 210.00055 * 26 25 8 43 43 H 1.09007 * 109.47467 * 330.00287 * 26 25 8 44 44 H 1.07995 * 119.96267 * 180.27155 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3527 1.5253 0.0005 5 6 3.8819 2.8103 0.0000 6 6 5.2472 2.9949 0.0000 7 6 5.8200 4.3888 -0.0011 8 6 6.0997 1.8885 0.0011 9 6 7.5662 2.0824 0.0006 10 6 8.1821 2.6817 -1.1051 11 6 9.5265 2.8822 -1.1392 12 6 10.3308 2.4733 -0.0548 13 6 11.7206 2.6707 -0.0847 14 1 12.3691 2.0342 0.4991 15 6 12.2670 3.6946 -0.8727 16 7 11.5038 4.6617 -1.3079 17 14 14.0853 3.6753 -1.2996 18 1 14.8321 4.5076 -0.3225 19 1 14.5908 2.2799 -1.2497 20 1 14.2787 4.2232 -2.6663 21 6 9.6933 1.8444 1.1066 22 6 10.4776 1.4226 2.2281 23 7 11.1008 1.0858 3.1139 24 6 8.3143 1.6653 1.1007 25 6 5.5640 0.5985 -0.0031 26 6 6.4793 -0.5986 -0.0077 27 6 4.1976 0.4220 0.0023 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5137 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 3.2220 3.6652 -0.0004 34 1 5.9585 4.7239 -1.0291 35 1 5.1347 5.0636 0.5118 36 1 6.7810 4.3871 0.5132 37 1 7.5779 2.9944 -1.9438 38 1 9.9800 3.3509 -2.0001 39 1 11.8816 5.3695 -1.8531 40 1 7.8245 1.2039 1.9454 41 1 6.7005 -0.8908 1.0188 42 1 5.9928 -1.4260 -0.5241 43 1 7.4068 -0.3449 -0.5211 44 1 3.7825 -0.5750 0.0035 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241201992.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:40 Heat of formation + Delta-G solvation = 6.702596 kcal Electronic energy + Delta-G solvation = -25688.752575 eV Core-core repulsion = 22148.976369 eV Total energy + Delta-G solvation = -3539.776206 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.06562 -38.40815 -37.07686 -35.13511 -34.19124 -33.25725 -32.21888 -30.86938 -29.89747 -29.05739 -27.18454 -26.60575 -25.11370 -23.41549 -22.20628 -21.79934 -20.33651 -20.09054 -17.76615 -17.41171 -17.12081 -16.10769 -15.93995 -15.52394 -14.93930 -14.26702 -14.12748 -13.87631 -13.52706 -13.32219 -13.00935 -12.87879 -12.82408 -12.72835 -12.68868 -12.66454 -12.44425 -12.01906 -11.91035 -11.73911 -11.70737 -11.54707 -11.38246 -11.29950 -11.25510 -11.06181 -10.82232 -10.59771 -10.34153 -10.33654 -9.90341 -9.78534 -9.51069 -8.30489 -7.87866 -7.73763 -7.36757 -7.18454 -4.74012 1.67400 1.72753 2.19953 2.61497 2.88861 2.92759 3.01008 3.27790 3.65239 3.91069 4.01372 4.19230 4.42961 4.77029 4.82066 5.05060 5.11838 5.14665 5.31124 5.31879 5.41112 5.45955 5.60000 5.60440 5.73185 5.79283 5.82387 5.93885 5.95913 6.05149 6.06142 6.11730 6.23970 6.26875 6.47684 6.58323 6.64510 6.70402 6.76208 6.89417 6.97025 7.09883 7.15917 7.22739 7.50333 7.63517 7.69818 7.81203 7.86086 8.20179 8.38662 8.54157 8.81870 9.68631 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021372 B = 0.002986 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.841209 B = 9374.801178 C =10004.976980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.321 6.321 4 C 0.114 3.886 5 C -0.160 4.160 6 C -0.040 4.040 7 C -0.111 4.111 8 C -0.034 4.034 9 C -0.189 4.189 10 C -0.054 4.054 11 C -0.166 4.166 12 C 0.156 3.844 13 C -0.425 4.425 14 H 0.086 0.914 15 C 0.076 3.924 16 N -0.757 5.757 17 Si 0.914 3.086 18 H -0.265 1.265 19 H -0.255 1.255 20 H -0.269 1.269 21 C -0.191 4.191 22 C 0.301 3.699 23 N -0.511 5.511 24 C -0.005 4.005 25 C -0.043 4.043 26 C -0.112 4.112 27 C -0.215 4.215 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.122 0.878 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.125 0.875 39 H 0.291 0.709 40 H 0.096 0.904 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.080 0.920 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.085 -3.579 -3.636 14.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.236 6.236 4 C 0.070 3.930 5 C -0.179 4.179 6 C -0.041 4.041 7 C -0.167 4.167 8 C -0.035 4.035 9 C -0.191 4.191 10 C -0.073 4.073 11 C -0.185 4.185 12 C 0.150 3.850 13 C -0.452 4.452 14 H 0.104 0.896 15 C -0.148 4.148 16 N -0.379 5.379 17 Si 0.737 3.263 18 H -0.190 1.190 19 H -0.179 1.179 20 H -0.194 1.194 21 C -0.197 4.197 22 C -0.009 4.009 23 N -0.190 5.190 24 C -0.026 4.026 25 C -0.043 4.043 26 C -0.169 4.169 27 C -0.234 4.234 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.140 0.860 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.142 0.858 39 H 0.102 0.898 40 H 0.114 0.886 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.099 0.901 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.271 -3.724 -2.397 13.991 hybrid contribution 0.469 0.007 -0.561 0.731 sum -12.803 -3.717 -2.958 13.656 Atomic orbital electron populations 1.21767 0.93152 1.02561 1.03344 1.22686 0.95426 0.82595 1.01244 1.85994 1.19706 1.28631 1.89257 1.18922 0.81577 0.94095 0.98439 1.20107 0.94543 0.94270 1.08934 1.19868 0.91497 0.95881 0.96807 1.20782 1.01793 0.91761 1.02385 1.18622 0.93106 0.90849 1.00895 1.17564 0.89674 1.14053 0.97789 1.20422 0.94674 0.96373 0.95824 1.20887 0.92535 1.05767 0.99282 1.18454 0.92553 0.86178 0.87819 1.19769 0.92692 1.11711 1.21015 0.89602 1.26132 1.01630 0.93878 0.93146 1.69721 1.38571 1.06660 1.22959 0.86163 0.80827 0.80472 0.78861 1.18988 1.17870 1.19399 1.16757 0.90698 1.20173 0.92055 1.25729 0.91950 0.91125 0.92079 1.80947 1.10098 1.14770 1.13197 1.20467 0.91218 0.95134 0.95741 1.19844 0.92656 0.94872 0.96964 1.20790 0.99445 0.94459 1.02161 1.20905 0.93735 0.97328 1.11425 0.91657 0.91659 0.90641 0.92295 0.92307 0.86012 0.91242 0.92460 0.90006 0.88948 0.85778 0.89759 0.88554 0.91492 0.92638 0.90088 0.86330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 37.16 0.38 -0.75 16 2 C 0.06 0.55 5.46 37.16 0.20 0.76 16 3 O -0.32 -4.35 10.13 -19.15 -0.19 -4.55 16 4 C 0.11 1.70 6.70 -39.04 -0.26 1.44 16 5 C -0.16 -2.44 9.62 -39.48 -0.38 -2.82 16 6 C -0.04 -0.65 5.90 -104.25 -0.61 -1.27 16 7 C -0.11 -1.66 9.02 36.01 0.32 -1.33 16 8 C -0.03 -0.59 5.27 -104.85 -0.55 -1.15 16 9 C -0.19 -3.58 2.96 -104.81 -0.31 -3.89 16 10 C -0.05 -1.06 8.62 -39.72 -0.34 -1.40 16 11 C -0.17 -3.62 8.62 -39.33 -0.34 -3.96 16 12 C 0.16 3.63 5.73 -104.61 -0.60 3.03 16 13 C -0.42 -10.11 8.55 -38.00 -0.32 -10.44 16 14 H 0.09 2.08 7.39 -52.49 -0.39 1.70 16 15 C 0.08 1.67 5.15 -17.28 -0.09 1.58 16 16 N -0.76 -16.80 10.96 55.57 0.61 -16.19 16 17 Si 0.91 16.81 29.59 -169.99 -5.03 11.78 16 18 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 19 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 20 H -0.27 -4.75 7.11 56.52 0.40 -4.34 16 21 C -0.19 -4.26 5.93 -104.27 -0.62 -4.88 16 22 C 0.30 6.99 14.29 -22.53 -0.32 6.66 16 23 N -0.51 -12.25 18.53 41.77 0.77 -11.47 16 24 C 0.00 -0.10 8.48 -38.84 -0.33 -0.42 16 25 C -0.04 -0.68 5.90 -104.26 -0.61 -1.30 16 26 C -0.11 -1.61 9.02 36.00 0.32 -1.28 16 27 C -0.22 -3.12 8.67 -39.48 -0.34 -3.46 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.54 7.66 -51.93 -0.40 0.15 16 32 H 0.06 0.55 7.65 -51.93 -0.40 0.15 16 33 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 36 H 0.08 1.38 6.92 -51.93 -0.36 1.02 16 37 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.12 2.78 6.19 -52.48 -0.32 2.45 16 39 H 0.29 5.78 8.29 -40.82 -0.34 5.45 16 40 H 0.10 1.81 8.06 -52.48 -0.42 1.39 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.05 0.67 8.09 -51.93 -0.42 0.25 16 43 H 0.08 1.28 6.92 -51.93 -0.36 0.92 16 44 H 0.12 1.44 6.28 -52.49 -0.33 1.11 16 LS Contribution 373.05 15.07 5.62 5.62 Total: -1.00 -25.36 373.05 -8.94 -34.30 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -5.91 Total: 5.37 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: -4.81 Total: -24.86 kcal Atomic # 7 Polarization: -29.05 SS G_CDS: 1.38 Total: -27.66 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: -0.19 Total: -4.55 kcal Atomic # 14 Polarization: 16.81 SS G_CDS: -5.03 Total: 11.78 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -25.36 -8.94 -34.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241201992.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.001 kcal (2) G-P(sol) polarization free energy of solvation -25.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds