Wall clock time and date at job start Tue Mar 31 2020 12:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42901 * 109.46526 * 2 1 4 4 C 1.35812 * 116.99506 * 179.97438 * 3 2 1 5 5 C 1.38967 * 119.91208 * 179.97438 * 4 3 2 6 6 C 1.37774 * 120.08418 * 180.02562 * 5 4 3 7 7 C 1.50702 * 120.04205 * 179.97438 * 6 5 4 8 8 C 1.39677 * 119.91217 * 359.97438 * 6 5 4 9 9 C 1.47925 * 120.08348 * 179.97438 * 8 6 5 10 10 C 1.40035 * 119.50174 * 294.97655 * 9 8 6 11 11 C 1.35966 * 121.18674 * 179.68623 * 10 9 8 12 12 C 1.41062 * 120.11623 * 0.61541 * 11 10 9 13 13 C 1.40407 * 120.48610 * 179.68668 * 12 11 10 14 14 H 1.08000 * 119.99972 * 205.24716 * 13 12 11 15 15 C 1.40280 * 120.00189 * 25.25159 * 13 12 11 16 16 N 1.30656 * 119.99548 * 17.06157 * 15 13 12 17 17 Si 1.86791 * 119.99896 * 197.06035 * 15 13 12 18 18 H 1.48505 * 109.47318 * 265.17832 * 17 15 13 19 19 H 1.48497 * 109.47593 * 25.18276 * 17 15 13 20 20 H 1.48502 * 109.46856 * 145.18000 * 17 15 13 21 21 C 1.46661 * 119.02572 * 359.42207 * 12 11 10 22 22 C 1.43201 * 120.56079 * 180.29753 * 21 12 11 23 23 N 9.61641 * 140.35006 * 329.50445 * 3 1 2 24 24 C 1.39059 * 118.87316 * 0.26627 * 21 12 11 25 25 C 1.39682 * 119.83389 * 0.24876 * 8 6 5 26 26 C 1.50694 * 120.04671 * 179.74823 * 25 8 6 27 27 C 1.37772 * 119.91081 * 359.49300 * 25 8 6 28 28 H 1.08996 * 109.46979 * 299.99841 * 1 2 3 29 29 H 1.08994 * 109.46710 * 60.00523 * 1 2 3 30 30 H 1.09004 * 109.46337 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47113 * 239.99671 * 2 1 3 32 32 H 1.09006 * 109.47098 * 119.99471 * 2 1 3 33 33 H 1.07995 * 119.95578 * 0.02562 * 5 4 3 34 34 H 1.09004 * 109.47109 * 269.98092 * 7 6 5 35 35 H 1.08996 * 109.46862 * 29.98093 * 7 6 5 36 36 H 1.08993 * 109.47141 * 149.97806 * 7 6 5 37 37 H 1.07997 * 119.40413 * 359.97438 * 10 9 8 38 38 H 1.08007 * 119.94450 * 180.30768 * 11 10 9 39 39 H 0.97001 * 119.99253 * 180.02562 * 16 15 13 40 40 H 1.08003 * 120.09704 * 179.97438 * 24 21 12 41 41 H 1.09001 * 109.47244 * 89.99744 * 26 25 8 42 42 H 1.08992 * 109.47671 * 210.00055 * 26 25 8 43 43 H 1.09007 * 109.47467 * 330.00287 * 26 25 8 44 44 H 1.07995 * 119.96267 * 180.27155 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3527 1.5253 0.0005 5 6 3.8819 2.8103 0.0000 6 6 5.2472 2.9949 0.0000 7 6 5.8200 4.3888 -0.0011 8 6 6.0997 1.8885 0.0011 9 6 7.5662 2.0824 0.0006 10 6 8.1821 2.6817 -1.1051 11 6 9.5265 2.8822 -1.1392 12 6 10.3308 2.4733 -0.0548 13 6 11.7206 2.6707 -0.0847 14 1 12.3691 2.0342 0.4991 15 6 12.2670 3.6946 -0.8727 16 7 11.5038 4.6617 -1.3079 17 14 14.0853 3.6753 -1.2996 18 1 14.8321 4.5076 -0.3225 19 1 14.5908 2.2799 -1.2497 20 1 14.2787 4.2232 -2.6663 21 6 9.6933 1.8444 1.1066 22 6 10.4776 1.4226 2.2281 23 7 11.1008 1.0858 3.1139 24 6 8.3143 1.6653 1.1007 25 6 5.5640 0.5985 -0.0031 26 6 6.4793 -0.5986 -0.0077 27 6 4.1976 0.4220 0.0023 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5137 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 3.2220 3.6652 -0.0004 34 1 5.9585 4.7239 -1.0291 35 1 5.1347 5.0636 0.5118 36 1 6.7810 4.3871 0.5132 37 1 7.5779 2.9944 -1.9438 38 1 9.9800 3.3509 -2.0001 39 1 11.8816 5.3695 -1.8531 40 1 7.8245 1.2039 1.9454 41 1 6.7005 -0.8908 1.0188 42 1 5.9928 -1.4260 -0.5241 43 1 7.4068 -0.3449 -0.5211 44 1 3.7825 -0.5750 0.0035 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241201992.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:39 Heat of formation + Delta-G solvation = -1.507281 kcal Electronic energy + Delta-G solvation = -25689.108582 eV Core-core repulsion = 22148.976369 eV Total energy + Delta-G solvation = -3540.132213 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.21764 -39.77288 -38.48101 -36.95550 -35.79836 -34.44498 -33.27217 -32.08243 -31.57360 -30.39504 -28.56236 -27.72978 -26.61098 -24.26938 -23.90302 -23.18862 -21.74491 -21.23302 -19.46437 -18.70758 -18.44459 -17.26725 -16.98977 -16.95339 -16.37300 -15.84537 -15.66405 -14.95838 -14.76432 -14.58815 -14.51294 -14.39192 -13.97543 -13.88640 -13.85055 -13.80374 -13.66276 -13.47616 -13.35520 -13.32052 -13.14208 -12.88089 -12.80784 -12.56910 -12.32141 -12.29298 -12.20220 -12.01135 -11.61395 -11.57854 -11.46038 -11.27279 -11.10093 -9.48362 -9.46463 -9.36016 -8.85945 -8.70710 -6.48353 0.41263 0.48845 0.53527 1.03665 1.37249 1.47159 1.52534 2.06100 2.13660 2.34637 2.40512 2.66232 2.86790 3.59386 3.69630 3.91573 3.98001 4.10589 4.18377 4.23192 4.30515 4.37361 4.42964 4.46366 4.63730 4.65130 4.78523 4.84248 4.87531 4.92457 4.95806 4.96669 4.98523 5.07692 5.14458 5.21367 5.26095 5.28517 5.41802 5.50374 5.52923 5.59554 5.79428 5.89185 5.95992 6.03210 6.15799 6.18620 6.49043 6.59052 6.66013 6.83084 6.98843 8.07290 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021372 B = 0.002986 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.841209 B = 9374.801178 C =10004.976980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.045 3.955 3 O -0.331 6.331 4 C 0.118 3.882 5 C -0.169 4.169 6 C -0.044 4.044 7 C -0.108 4.108 8 C -0.066 4.066 9 C -0.163 4.163 10 C -0.047 4.047 11 C -0.176 4.176 12 C 0.136 3.864 13 C -0.460 4.460 14 H 0.069 0.931 15 C 0.046 3.954 16 N -0.779 5.779 17 Si 0.975 3.025 18 H -0.266 1.266 19 H -0.263 1.263 20 H -0.251 1.251 21 C -0.208 4.208 22 C 0.305 3.695 23 N -0.532 5.532 24 C -0.006 4.006 25 C -0.046 4.046 26 C -0.110 4.110 27 C -0.215 4.215 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.136 0.864 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.110 0.890 38 H 0.116 0.884 39 H 0.301 0.699 40 H 0.108 0.892 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.333 -4.133 -4.410 17.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.030 4.030 3 O -0.246 6.246 4 C 0.073 3.927 5 C -0.187 4.187 6 C -0.044 4.044 7 C -0.165 4.165 8 C -0.066 4.066 9 C -0.165 4.165 10 C -0.066 4.066 11 C -0.196 4.196 12 C 0.131 3.869 13 C -0.488 4.488 14 H 0.087 0.913 15 C -0.176 4.176 16 N -0.401 5.401 17 Si 0.795 3.205 18 H -0.190 1.190 19 H -0.187 1.187 20 H -0.175 1.175 21 C -0.214 4.214 22 C -0.003 4.003 23 N -0.212 5.212 24 C -0.027 4.027 25 C -0.046 4.046 26 C -0.167 4.167 27 C -0.233 4.233 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.118 0.882 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.154 0.846 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.128 0.872 38 H 0.134 0.866 39 H 0.113 0.887 40 H 0.126 0.874 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.079 0.921 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.548 -4.280 -3.172 16.436 hybrid contribution 0.873 0.127 -0.323 0.940 sum -14.675 -4.153 -3.495 15.647 Atomic orbital electron populations 1.21798 0.91379 1.04112 1.03166 1.23033 0.96898 0.81016 1.02057 1.86005 1.18734 1.31056 1.88819 1.19079 0.82447 0.94113 0.97084 1.20276 0.94279 0.95244 1.08918 1.19954 0.91964 0.95858 0.96611 1.20760 1.01002 0.91959 1.02745 1.18608 0.91912 0.92193 1.03924 1.17720 0.90903 1.11352 0.96507 1.20609 0.94003 0.95459 0.96525 1.20839 0.93324 1.06598 0.98806 1.18694 0.92922 0.86811 0.88504 1.19828 0.92990 1.13044 1.22888 0.91289 1.26738 1.05178 0.93031 0.92604 1.69711 1.40140 1.07023 1.23261 0.85275 0.76062 0.79860 0.79299 1.19036 1.18681 1.17498 1.16933 0.91594 1.21118 0.91772 1.25963 0.91650 0.90706 0.92025 1.80916 1.10537 1.15787 1.13935 1.20601 0.90346 0.95186 0.96523 1.20002 0.93592 0.94572 0.96462 1.20789 0.98555 0.94857 1.02494 1.21116 0.93002 0.98558 1.10624 0.91887 0.91802 0.88230 0.91364 0.91510 0.84601 0.90600 0.90389 0.92383 0.87242 0.86582 0.88689 0.87386 0.91107 0.90123 0.92061 0.83817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 10.28 71.98 0.74 -1.01 16 2 C 0.04 0.74 5.46 71.98 0.39 1.13 16 3 O -0.33 -8.06 10.13 -91.44 -0.93 -8.99 16 4 C 0.12 3.21 6.70 22.62 0.15 3.36 16 5 C -0.17 -4.76 9.62 22.33 0.21 -4.55 16 6 C -0.04 -1.35 5.90 -19.63 -0.12 -1.46 16 7 C -0.11 -3.11 9.02 71.24 0.64 -2.47 16 8 C -0.07 -2.20 5.27 -20.01 -0.11 -2.30 16 9 C -0.16 -6.14 2.96 -19.99 -0.06 -6.19 16 10 C -0.05 -1.84 8.62 22.18 0.19 -1.65 16 11 C -0.18 -7.89 8.62 22.43 0.19 -7.70 16 12 C 0.14 6.58 5.73 -19.86 -0.11 6.47 16 13 C -0.46 -22.83 8.55 23.30 0.20 -22.63 16 14 H 0.07 3.54 7.39 -2.91 -0.02 3.51 16 15 C 0.05 2.08 5.15 85.36 0.44 2.52 16 16 N -0.78 -35.08 10.96 21.88 0.24 -34.84 16 17 Si 0.97 34.83 29.59 68.60 2.03 36.86 16 18 H -0.27 -9.44 7.11 99.48 0.71 -8.73 16 19 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 20 H -0.25 -8.18 7.11 99.48 0.71 -7.47 16 21 C -0.21 -9.56 5.93 -19.64 -0.12 -9.68 16 22 C 0.31 14.61 14.29 88.35 1.26 15.88 16 23 N -0.53 -26.14 18.53 18.98 0.35 -25.78 16 24 C -0.01 -0.24 8.48 22.75 0.19 -0.05 16 25 C -0.05 -1.37 5.90 -19.63 -0.12 -1.48 16 26 C -0.11 -2.97 9.02 71.23 0.64 -2.33 16 27 C -0.21 -5.59 8.67 22.33 0.19 -5.40 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 1.02 7.66 -2.39 -0.02 1.00 16 32 H 0.07 1.01 7.65 -2.38 -0.02 0.99 16 33 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 34 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.08 1.88 8.08 -2.39 -0.02 1.86 16 36 H 0.06 1.94 6.92 -2.39 -0.02 1.92 16 37 H 0.11 3.90 8.06 -2.91 -0.02 3.87 16 38 H 0.12 5.34 6.19 -2.91 -0.02 5.32 16 39 H 0.30 11.99 8.29 -92.71 -0.77 11.23 16 40 H 0.11 4.05 8.06 -2.91 -0.02 4.03 16 41 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.08 1.74 8.09 -2.39 -0.02 1.72 16 43 H 0.06 1.89 6.92 -2.38 -0.02 1.87 16 44 H 0.14 2.95 6.28 -2.91 -0.02 2.93 16 Total: -1.00 -55.27 373.05 7.54 -47.72 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 1.02 Total: 24.59 kcal Atomic # 6 Polarization: -44.39 SS G_CDS: 4.83 Total: -39.56 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: 0.59 Total: -60.63 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -0.93 Total: -8.99 kcal Atomic # 14 Polarization: 34.83 SS G_CDS: 2.03 Total: 36.86 kcal Total: -55.27 7.54 -47.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241201992.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.216 kcal (2) G-P(sol) polarization free energy of solvation -55.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds