Wall clock time and date at job start Tue Mar 31 2020 12:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42895 * 109.47247 * 2 1 4 4 C 1.35869 * 117.00282 * 180.02562 * 3 2 1 5 5 C 1.38873 * 119.92491 * 0.02562 * 4 3 2 6 6 C 1.37855 * 120.07415 * 179.97438 * 5 4 3 7 7 C 1.39494 * 119.92712 * 0.02562 * 6 5 4 8 8 C 1.48159 * 120.07522 * 180.02562 * 7 6 5 9 9 C 1.39182 * 120.28225 * 64.72360 * 8 7 6 10 10 C 1.38326 * 120.09739 * 179.65505 * 9 8 7 11 11 C 1.38039 * 120.77423 * 0.65981 * 10 9 8 12 12 C 1.39122 * 120.24466 * 359.64973 * 11 10 9 13 13 N 1.38176 * 132.74788 * 180.02562 * 12 11 10 14 14 H 0.97007 * 124.69834 * 359.96179 * 13 12 11 15 15 C 1.35596 * 110.60150 * 179.97438 * 13 12 11 16 16 C 1.39000 * 109.24126 * 359.97438 * 15 13 12 17 17 C 1.40958 * 126.92557 * 180.02562 * 16 15 13 18 18 H 1.08005 * 119.99973 * 165.80762 * 17 16 15 19 19 C 1.39680 * 120.00514 * 345.80476 * 17 16 15 20 20 N 1.31078 * 120.00348 * 159.90310 * 19 17 16 21 21 Si 1.86798 * 119.99543 * 339.90972 * 19 17 16 22 22 H 1.48497 * 109.47388 * 94.13972 * 21 19 17 23 23 H 1.48509 * 109.47054 * 214.14130 * 21 19 17 24 24 H 1.48507 * 109.47463 * 334.13704 * 21 19 17 25 25 C 1.40212 * 120.27979 * 244.99785 * 8 7 6 26 26 C 1.39462 * 119.84765 * 0.27376 * 7 6 5 27 27 C 1.50708 * 120.03493 * 179.72212 * 26 7 6 28 28 C 1.37895 * 119.92694 * 359.44724 * 26 7 6 29 29 H 1.09004 * 109.47266 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46843 * 299.99454 * 1 2 3 31 31 H 1.08998 * 109.47594 * 59.99495 * 1 2 3 32 32 H 1.09006 * 109.46843 * 240.00546 * 2 1 3 33 33 H 1.08998 * 109.47594 * 120.00505 * 2 1 3 34 34 H 1.08004 * 119.96200 * 0.02562 * 5 4 3 35 35 H 1.07997 * 120.03337 * 179.97438 * 6 5 4 36 36 H 1.08004 * 119.95131 * 359.97438 * 9 8 7 37 37 H 1.08001 * 119.60738 * 180.31155 * 10 9 8 38 38 H 1.07997 * 119.87716 * 179.67361 * 11 10 9 39 39 H 1.07996 * 125.38021 * 179.97438 * 15 13 12 40 40 H 0.96997 * 120.00141 * 179.97438 * 20 19 17 41 41 H 1.08998 * 109.46900 * 89.99933 * 27 26 7 42 42 H 1.08999 * 109.47019 * 209.99994 * 27 26 7 43 43 H 1.09000 * 109.46897 * 330.00170 * 27 26 7 44 44 H 1.08002 * 119.96280 * 180.25576 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3533 1.5253 -0.0005 5 6 4.1978 0.4229 -0.0016 6 6 5.5650 0.6000 -0.0027 7 6 6.0998 1.8883 -0.0022 8 6 7.5686 2.0824 -0.0039 9 6 8.3302 1.6666 -1.0921 10 6 9.7005 1.8562 -1.0928 11 6 10.3326 2.4445 -0.0159 12 6 9.5947 2.8631 1.0868 13 7 9.9489 3.4682 2.2774 14 1 10.8555 3.7057 2.5279 15 6 8.8537 3.6839 3.0473 16 6 7.7259 3.2217 2.3792 17 6 6.3939 3.2611 2.8386 18 1 5.5799 3.0862 2.1506 19 6 6.1265 3.5265 4.1836 20 7 4.9398 3.9502 4.5448 21 14 7.4601 3.2775 5.4677 22 1 8.1670 4.5621 5.7027 23 1 6.8449 2.8116 6.7365 24 1 8.4287 2.2606 4.9848 25 6 8.2039 2.6814 1.0932 26 6 5.2488 2.9931 0.0052 27 6 5.8221 4.3869 0.0121 28 6 3.8822 2.8089 0.0004 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.7831 -0.5744 -0.0024 35 1 6.2211 -0.2578 -0.0031 36 1 7.8501 1.1999 -1.9395 37 1 10.2831 1.5351 -1.9436 38 1 11.4038 2.5807 -0.0295 39 1 8.8572 4.1423 4.0251 40 1 4.7541 4.1341 5.4789 41 1 5.9588 4.7286 -1.0139 42 1 5.1380 5.0586 0.5307 43 1 6.7842 4.3814 0.5245 44 1 3.2226 3.6641 0.0020 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241273220.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:30 Heat of formation + Delta-G solvation = 36.259436 kcal Electronic energy + Delta-G solvation = -26928.266803 eV Core-core repulsion = 23389.772278 eV Total energy + Delta-G solvation = -3538.494525 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.21713 -39.50764 -37.50568 -35.73692 -33.55339 -32.28884 -31.81618 -31.12903 -29.57799 -28.31742 -27.74561 -26.20475 -24.46761 -23.33475 -22.64777 -21.33509 -20.69799 -20.26227 -19.27294 -17.39740 -17.18347 -16.35113 -15.87162 -15.57031 -15.54772 -14.87335 -14.38607 -14.08559 -13.83645 -13.55130 -13.37858 -13.15789 -12.99205 -12.96478 -12.70682 -12.52290 -12.34602 -11.95568 -11.62058 -11.48424 -11.36027 -11.25515 -11.08967 -10.96930 -10.78229 -10.67933 -10.36508 -10.29008 -10.15394 -9.94453 -9.43654 -9.15054 -8.49553 -8.11155 -7.40934 -7.22718 -6.81867 -6.67087 -4.02032 1.72256 1.97899 2.21385 2.50433 3.06631 3.23231 3.35902 3.51043 3.82380 4.10853 4.28180 4.37306 4.66762 4.97762 5.03536 5.26901 5.36674 5.38181 5.39429 5.46308 5.54908 5.62106 5.79520 5.80912 5.86519 5.93669 6.00298 6.09063 6.14869 6.15888 6.36341 6.44194 6.48740 6.60512 6.63591 6.68460 6.83477 6.90045 7.00293 7.05821 7.19093 7.26510 7.30226 7.39976 7.56146 7.63973 7.86113 7.89737 8.25411 8.52729 8.71365 8.91158 9.07062 10.32601 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011162 B = 0.005463 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.814150 B = 5124.015389 C = 6905.672227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.319 6.319 4 C 0.126 3.874 5 C -0.220 4.220 6 C -0.065 4.065 7 C -0.064 4.064 8 C 0.026 3.974 9 C -0.180 4.180 10 C -0.100 4.100 11 C -0.162 4.162 12 C 0.107 3.893 13 N -0.583 5.583 14 H 0.396 0.604 15 C -0.189 4.189 16 C 0.043 3.957 17 C -0.421 4.421 18 H 0.106 0.894 19 C 0.084 3.916 20 N -0.818 5.818 21 Si 0.898 3.102 22 H -0.277 1.277 23 H -0.297 1.297 24 H -0.246 1.246 25 C -0.114 4.114 26 C 0.000 4.000 27 C -0.120 4.120 28 C -0.151 4.151 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.138 0.862 40 H 0.279 0.721 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.094 0.906 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.748 -5.287 -8.252 9.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.234 6.234 4 C 0.082 3.918 5 C -0.239 4.239 6 C -0.084 4.084 7 C -0.064 4.064 8 C 0.025 3.975 9 C -0.201 4.201 10 C -0.120 4.120 11 C -0.184 4.184 12 C -0.005 4.005 13 N -0.185 5.185 14 H 0.229 0.771 15 C -0.311 4.311 16 C 0.037 3.963 17 C -0.451 4.451 18 H 0.124 0.876 19 C -0.132 4.132 20 N -0.445 5.445 21 Si 0.727 3.273 22 H -0.204 1.204 23 H -0.225 1.225 24 H -0.170 1.170 25 C -0.121 4.121 26 C 0.000 4.000 27 C -0.176 4.176 28 C -0.170 4.170 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.120 0.880 39 H 0.155 0.845 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.112 0.888 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.095 -5.000 -7.930 9.438 hybrid contribution 1.076 -0.246 1.163 1.603 sum -0.019 -5.246 -6.767 8.562 Atomic orbital electron populations 1.21762 0.93246 1.02402 1.03395 1.22677 0.95406 0.82740 1.01159 1.86021 1.19752 1.28498 1.89088 1.18909 0.81553 0.94149 0.97197 1.20921 0.94184 0.97297 1.11500 1.20830 0.93842 0.96238 0.97452 1.18512 0.92160 0.92399 1.03318 1.17986 0.90649 0.96297 0.92524 1.20594 0.93501 1.07455 0.98507 1.20373 0.94253 1.00257 0.97080 1.19808 0.97837 1.06998 0.93789 1.18123 0.94154 0.99945 0.88304 1.40874 1.08229 1.54777 1.14576 0.77095 1.21429 0.86059 1.23116 1.00455 1.18183 0.92545 0.95541 0.90044 1.19020 0.91544 1.39885 0.94636 0.87595 1.25904 0.95838 0.91796 0.99693 1.69808 1.22556 1.33041 1.19079 0.86534 0.81853 0.80072 0.78859 1.20373 1.22505 1.16955 1.19145 0.91673 1.04983 0.96323 1.19592 0.91400 0.95646 0.93361 1.21008 1.03747 0.92041 1.00821 1.20124 0.94551 0.94461 1.07834 0.90768 0.91528 0.91745 0.92448 0.92200 0.86293 0.86264 0.87313 0.87228 0.87953 0.84459 0.91095 0.92557 0.91478 0.88757 0.85694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.28 37.16 0.38 -1.11 16 2 C 0.06 0.70 5.46 37.16 0.20 0.90 16 3 O -0.32 -5.38 10.13 -19.33 -0.20 -5.57 16 4 C 0.13 2.34 6.69 -39.13 -0.26 2.07 16 5 C -0.22 -3.81 9.02 -39.49 -0.36 -4.17 16 6 C -0.07 -1.21 9.73 -39.25 -0.38 -1.59 16 7 C -0.06 -1.29 4.51 -104.90 -0.47 -1.77 16 8 C 0.03 0.54 4.63 -104.73 -0.49 0.05 16 9 C -0.18 -3.24 9.73 -39.20 -0.38 -3.62 16 10 C -0.10 -1.67 10.00 -39.62 -0.40 -2.07 16 11 C -0.16 -2.87 10.06 -39.33 -0.40 -3.27 16 12 C 0.11 2.22 7.23 -83.91 -0.61 1.61 16 13 N -0.58 -11.83 5.99 -9.81 -0.06 -11.89 16 14 H 0.40 6.48 8.96 -40.82 -0.37 6.11 16 15 C -0.19 -4.43 9.33 -15.61 -0.15 -4.57 16 16 C 0.04 1.07 4.69 -104.83 -0.49 0.58 16 17 C -0.42 -11.19 8.43 -38.01 -0.32 -11.51 16 18 H 0.11 2.91 4.41 -52.48 -0.23 2.68 16 19 C 0.08 2.22 5.49 -17.34 -0.10 2.12 16 20 N -0.82 -22.22 13.94 55.54 0.77 -21.45 16 21 Si 0.90 20.88 24.54 -169.99 -4.17 16.70 16 22 H -0.28 -6.21 6.77 56.52 0.38 -5.83 16 23 H -0.30 -6.83 7.11 56.52 0.40 -6.42 16 24 H -0.25 -5.83 6.53 56.52 0.37 -5.46 16 25 C -0.11 -2.61 4.77 -104.64 -0.50 -3.11 16 26 C 0.00 0.00 3.59 -104.29 -0.37 -0.37 16 27 C -0.12 -2.38 8.58 36.01 0.31 -2.07 16 28 C -0.15 -2.96 9.62 -39.49 -0.38 -3.34 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.64 7.65 -51.93 -0.40 0.24 16 33 H 0.06 0.74 7.66 -51.93 -0.40 0.34 16 34 H 0.12 1.70 6.28 -52.48 -0.33 1.37 16 35 H 0.12 1.99 8.06 -52.49 -0.42 1.56 16 36 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 37 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.10 1.53 8.06 -52.49 -0.42 1.10 16 39 H 0.14 3.18 4.06 -52.49 -0.21 2.97 16 40 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 43 H 0.09 2.10 4.29 -51.93 -0.22 1.87 16 44 H 0.13 2.31 8.06 -52.49 -0.42 1.89 16 LS Contribution 349.45 15.07 5.27 5.27 Total: -1.00 -29.60 349.45 -9.11 -38.70 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -5.57 Total: 13.46 kcal Atomic # 6 Polarization: -30.07 SS G_CDS: -5.15 Total: -35.23 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: 0.72 Total: -33.33 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -0.20 Total: -5.57 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.17 Total: 16.70 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.60 -9.11 -38.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241273220.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.962 kcal (2) G-P(sol) polarization free energy of solvation -29.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds