Wall clock time and date at job start Tue Mar 31 2020 12:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42895 * 109.47247 * 2 1 4 4 C 1.35869 * 117.00282 * 180.02562 * 3 2 1 5 5 C 1.38873 * 119.92491 * 0.02562 * 4 3 2 6 6 C 1.37855 * 120.07415 * 179.97438 * 5 4 3 7 7 C 1.39494 * 119.92712 * 0.02562 * 6 5 4 8 8 C 1.48159 * 120.07522 * 180.02562 * 7 6 5 9 9 C 1.39182 * 120.28225 * 64.72360 * 8 7 6 10 10 C 1.38326 * 120.09739 * 179.65505 * 9 8 7 11 11 C 1.38039 * 120.77423 * 0.65981 * 10 9 8 12 12 C 1.39122 * 120.24466 * 359.64973 * 11 10 9 13 13 N 1.38176 * 132.74788 * 180.02562 * 12 11 10 14 14 H 0.97007 * 124.69834 * 359.96179 * 13 12 11 15 15 C 1.35596 * 110.60150 * 179.97438 * 13 12 11 16 16 C 1.39000 * 109.24126 * 359.97438 * 15 13 12 17 17 C 1.40958 * 126.92557 * 180.02562 * 16 15 13 18 18 H 1.08005 * 119.99973 * 165.80762 * 17 16 15 19 19 C 1.39680 * 120.00514 * 345.80476 * 17 16 15 20 20 N 1.31078 * 120.00348 * 159.90310 * 19 17 16 21 21 Si 1.86798 * 119.99543 * 339.90972 * 19 17 16 22 22 H 1.48497 * 109.47388 * 94.13972 * 21 19 17 23 23 H 1.48509 * 109.47054 * 214.14130 * 21 19 17 24 24 H 1.48507 * 109.47463 * 334.13704 * 21 19 17 25 25 C 1.40212 * 120.27979 * 244.99785 * 8 7 6 26 26 C 1.39462 * 119.84765 * 0.27376 * 7 6 5 27 27 C 1.50708 * 120.03493 * 179.72212 * 26 7 6 28 28 C 1.37895 * 119.92694 * 359.44724 * 26 7 6 29 29 H 1.09004 * 109.47266 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46843 * 299.99454 * 1 2 3 31 31 H 1.08998 * 109.47594 * 59.99495 * 1 2 3 32 32 H 1.09006 * 109.46843 * 240.00546 * 2 1 3 33 33 H 1.08998 * 109.47594 * 120.00505 * 2 1 3 34 34 H 1.08004 * 119.96200 * 0.02562 * 5 4 3 35 35 H 1.07997 * 120.03337 * 179.97438 * 6 5 4 36 36 H 1.08004 * 119.95131 * 359.97438 * 9 8 7 37 37 H 1.08001 * 119.60738 * 180.31155 * 10 9 8 38 38 H 1.07997 * 119.87716 * 179.67361 * 11 10 9 39 39 H 1.07996 * 125.38021 * 179.97438 * 15 13 12 40 40 H 0.96997 * 120.00141 * 179.97438 * 20 19 17 41 41 H 1.08998 * 109.46900 * 89.99933 * 27 26 7 42 42 H 1.08999 * 109.47019 * 209.99994 * 27 26 7 43 43 H 1.09000 * 109.46897 * 330.00170 * 27 26 7 44 44 H 1.08002 * 119.96280 * 180.25576 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3533 1.5253 -0.0005 5 6 4.1978 0.4229 -0.0016 6 6 5.5650 0.6000 -0.0027 7 6 6.0998 1.8883 -0.0022 8 6 7.5686 2.0824 -0.0039 9 6 8.3302 1.6666 -1.0921 10 6 9.7005 1.8562 -1.0928 11 6 10.3326 2.4445 -0.0159 12 6 9.5947 2.8631 1.0868 13 7 9.9489 3.4682 2.2774 14 1 10.8555 3.7057 2.5279 15 6 8.8537 3.6839 3.0473 16 6 7.7259 3.2217 2.3792 17 6 6.3939 3.2611 2.8386 18 1 5.5799 3.0862 2.1506 19 6 6.1265 3.5265 4.1836 20 7 4.9398 3.9502 4.5448 21 14 7.4601 3.2775 5.4677 22 1 8.1670 4.5621 5.7027 23 1 6.8449 2.8116 6.7365 24 1 8.4287 2.2606 4.9848 25 6 8.2039 2.6814 1.0932 26 6 5.2488 2.9931 0.0052 27 6 5.8221 4.3869 0.0121 28 6 3.8822 2.8089 0.0004 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.7831 -0.5744 -0.0024 35 1 6.2211 -0.2578 -0.0031 36 1 7.8501 1.1999 -1.9395 37 1 10.2831 1.5351 -1.9436 38 1 11.4038 2.5807 -0.0295 39 1 8.8572 4.1423 4.0251 40 1 4.7541 4.1341 5.4789 41 1 5.9588 4.7286 -1.0139 42 1 5.1380 5.0586 0.5307 43 1 6.7842 4.3814 0.5245 44 1 3.2226 3.6641 0.0020 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241273220.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:29 Heat of formation + Delta-G solvation = 20.530486 kcal Electronic energy + Delta-G solvation = -26928.948861 eV Core-core repulsion = 23389.772278 eV Total energy + Delta-G solvation = -3539.176583 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.76923 -40.90368 -38.89472 -37.23636 -35.37136 -33.73300 -33.18340 -32.41431 -31.17707 -29.87821 -29.21420 -27.71326 -26.25144 -24.40447 -24.11412 -22.88098 -22.21893 -21.72481 -20.92288 -18.77640 -18.70264 -18.14392 -17.16526 -16.97904 -16.92919 -16.39962 -16.06931 -15.65662 -15.22631 -15.09667 -14.92925 -14.79268 -14.41943 -14.24861 -14.06718 -13.76589 -13.49418 -13.44147 -13.28690 -12.96889 -12.81229 -12.66604 -12.57249 -12.48209 -12.33964 -12.22528 -11.97097 -11.62338 -11.55350 -11.45873 -11.23744 -10.99713 -10.11476 -9.59515 -8.91227 -8.79130 -8.64567 -8.39947 -5.94554 0.23115 0.51963 0.73175 1.00436 1.21340 1.34995 1.49264 1.99897 2.21973 2.32729 2.76410 2.87422 3.10972 3.54094 3.90035 3.95047 4.01225 4.08344 4.21821 4.24822 4.34733 4.37255 4.40967 4.45113 4.63400 4.64989 4.67089 4.82387 4.84222 4.95652 4.96182 4.98920 5.01889 5.12068 5.16946 5.22752 5.29505 5.40235 5.46637 5.50051 5.57578 5.76740 5.82422 5.92714 6.00884 6.05670 6.21062 6.56530 6.58765 6.65635 6.91417 7.12907 7.27814 8.44325 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011162 B = 0.005463 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.814150 B = 5124.015389 C = 6905.672227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.043 3.957 3 O -0.335 6.335 4 C 0.122 3.878 5 C -0.216 4.216 6 C -0.071 4.071 7 C -0.082 4.082 8 C 0.007 3.993 9 C -0.170 4.170 10 C -0.090 4.090 11 C -0.156 4.156 12 C 0.095 3.905 13 N -0.579 5.579 14 H 0.415 0.585 15 C -0.180 4.180 16 C 0.014 3.986 17 C -0.440 4.440 18 H 0.086 0.914 19 C 0.039 3.961 20 N -0.866 5.866 21 Si 0.951 3.049 22 H -0.265 1.265 23 H -0.295 1.295 24 H -0.254 1.254 25 C -0.145 4.145 26 C -0.015 4.015 27 C -0.111 4.111 28 C -0.174 4.174 29 H 0.104 0.896 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.151 0.849 35 H 0.138 0.862 36 H 0.132 0.868 37 H 0.155 0.845 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.281 0.719 41 H 0.077 0.923 42 H 0.053 0.947 43 H 0.071 0.929 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.416 -7.331 -10.229 12.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.031 4.031 3 O -0.250 6.250 4 C 0.077 3.923 5 C -0.235 4.235 6 C -0.089 4.089 7 C -0.082 4.082 8 C 0.006 3.994 9 C -0.190 4.190 10 C -0.109 4.109 11 C -0.177 4.177 12 C -0.016 4.016 13 N -0.184 5.184 14 H 0.252 0.748 15 C -0.303 4.303 16 C 0.007 3.993 17 C -0.471 4.471 18 H 0.104 0.896 19 C -0.171 4.171 20 N -0.496 5.496 21 Si 0.778 3.222 22 H -0.192 1.192 23 H -0.223 1.223 24 H -0.178 1.178 25 C -0.152 4.152 26 C -0.015 4.015 27 C -0.167 4.167 28 C -0.193 4.193 29 H 0.122 0.878 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.169 0.831 35 H 0.156 0.844 36 H 0.150 0.850 37 H 0.172 0.828 38 H 0.156 0.844 39 H 0.155 0.845 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.104 -7.048 -9.929 12.226 hybrid contribution 0.481 0.298 1.529 1.630 sum 1.585 -6.750 -8.401 10.892 Atomic orbital electron populations 1.21801 0.91243 1.04260 1.03053 1.23075 0.97066 0.80893 1.02114 1.86018 1.18785 1.31406 1.88799 1.19014 0.82619 0.94033 0.96624 1.21236 0.93709 0.98405 1.10108 1.21115 0.94677 0.96170 0.96946 1.18684 0.92388 0.93007 1.04157 1.18202 0.91038 0.97080 0.93041 1.20990 0.94286 1.05774 0.97933 1.20908 0.93887 0.98247 0.97843 1.20263 0.99575 1.05405 0.92470 1.18519 0.93844 1.00086 0.89146 1.40776 1.08457 1.54889 1.14279 0.74845 1.21519 0.86937 1.21489 1.00344 1.18337 0.92247 0.96795 0.91918 1.19054 0.92158 1.41181 0.94745 0.89632 1.26519 0.97448 0.91957 1.01177 1.69873 1.24212 1.36041 1.19448 0.85721 0.79587 0.79989 0.76870 1.19162 1.22252 1.17768 1.19339 0.92977 1.06469 0.96390 1.19658 0.91838 0.95815 0.94182 1.20871 1.02063 0.92292 1.01487 1.20253 0.94607 0.95405 1.09029 0.87752 0.92509 0.91472 0.90498 0.92069 0.83113 0.84398 0.84992 0.82772 0.84401 0.84502 0.90885 0.90486 0.92841 0.91011 0.86059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 10.28 71.98 0.74 -1.92 16 2 C 0.04 1.02 5.46 71.98 0.39 1.41 16 3 O -0.34 -11.34 10.13 -92.08 -0.93 -12.28 16 4 C 0.12 4.58 6.69 22.56 0.15 4.73 16 5 C -0.22 -7.29 9.02 22.33 0.20 -7.09 16 6 C -0.07 -2.58 9.73 22.48 0.22 -2.36 16 7 C -0.08 -3.36 4.51 -20.04 -0.09 -3.45 16 8 C 0.01 0.28 4.63 -19.94 -0.09 0.19 16 9 C -0.17 -5.54 9.73 22.52 0.22 -5.32 16 10 C -0.09 -2.54 10.00 22.24 0.22 -2.32 16 11 C -0.16 -4.83 10.06 22.43 0.23 -4.60 16 12 C 0.09 3.75 7.23 38.85 0.28 4.03 16 13 N -0.58 -22.57 5.99 -184.94 -1.11 -23.68 16 14 H 0.41 12.58 8.96 -92.70 -0.83 11.75 16 15 C -0.18 -8.42 9.33 84.29 0.79 -7.63 16 16 C 0.01 0.69 4.69 -20.00 -0.09 0.60 16 17 C -0.44 -24.57 8.43 23.29 0.20 -24.38 16 18 H 0.09 5.02 4.41 -2.91 -0.01 5.01 16 19 C 0.04 2.19 5.49 85.15 0.47 2.65 16 20 N -0.87 -49.72 13.94 21.79 0.30 -49.42 16 21 Si 0.95 44.32 24.54 68.60 1.68 46.00 16 22 H -0.27 -11.66 6.77 99.48 0.67 -10.99 16 23 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 24 H -0.25 -11.93 6.53 99.48 0.65 -11.28 16 25 C -0.15 -6.58 4.77 -19.88 -0.09 -6.68 16 26 C -0.01 -0.63 3.59 -19.65 -0.07 -0.70 16 27 C -0.11 -4.65 8.58 71.24 0.61 -4.03 16 28 C -0.17 -7.19 9.62 22.33 0.21 -6.97 16 29 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.08 1.52 7.65 -2.38 -0.02 1.50 16 33 H 0.06 1.43 7.66 -2.39 -0.02 1.41 16 34 H 0.15 3.98 6.28 -2.91 -0.02 3.96 16 35 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 36 H 0.13 3.66 8.06 -2.91 -0.02 3.64 16 37 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 38 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 39 H 0.14 6.31 4.06 -2.91 -0.01 6.30 16 40 H 0.28 14.88 8.30 -92.71 -0.77 14.11 16 41 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 42 H 0.05 2.29 8.09 -2.39 -0.02 2.27 16 43 H 0.07 3.35 4.29 -2.39 -0.01 3.34 16 44 H 0.12 4.86 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -67.71 349.45 4.56 -63.15 By element: Atomic # 1 Polarization: 39.95 SS G_CDS: 0.13 Total: 40.07 kcal Atomic # 6 Polarization: -68.33 SS G_CDS: 4.49 Total: -63.85 kcal Atomic # 7 Polarization: -72.29 SS G_CDS: -0.80 Total: -73.10 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -0.93 Total: -12.28 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.68 Total: 46.00 kcal Total: -67.71 4.56 -63.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241273220.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.678 kcal (2) G-P(sol) polarization free energy of solvation -67.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds