Wall clock time and date at job start Tue Mar 31 2020 13:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21284 * 120.00116 * 2 1 4 4 N 1.34776 * 120.00235 * 180.02562 * 2 1 3 5 5 C 1.46991 * 121.32970 * 359.97438 * 4 2 1 6 6 C 1.50345 * 109.18781 * 223.11102 * 5 4 2 7 7 C 1.31306 * 123.40791 * 349.39457 * 6 5 4 8 8 C 1.47544 * 117.82227 * 180.58302 * 7 6 5 9 9 C 1.37908 * 120.41112 * 104.73831 * 8 7 6 10 10 C 1.41079 * 120.41120 * 179.70890 * 9 8 7 11 11 C 1.41234 * 119.47360 * 180.29568 * 10 9 8 12 12 H 1.07997 * 120.00174 * 25.69497 * 11 10 9 13 13 C 1.39918 * 119.99785 * 205.68800 * 11 10 9 14 14 N 1.30839 * 120.00249 * 18.23571 * 13 11 10 15 15 Si 1.86801 * 119.99878 * 198.22546 * 13 11 10 16 16 H 1.48497 * 109.47039 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46881 * 120.00500 * 15 13 11 18 18 H 1.48502 * 109.47390 * 240.00480 * 15 13 11 19 19 C 1.39956 * 121.05285 * 0.27125 * 10 9 8 20 20 C 1.39893 * 120.29379 * 0.02562 * 19 10 9 21 21 C 1.40881 * 121.05962 * 179.97438 * 20 19 10 22 22 C 1.36188 * 119.61434 * 180.02562 * 21 20 19 23 23 C 1.39242 * 120.93995 * 359.97438 * 22 21 20 24 24 C 1.36559 * 120.96115 * 0.02626 * 23 22 21 25 25 C 1.39755 * 119.74354 * 359.95378 * 24 23 22 26 26 C 1.49990 * 124.35957 * 0.30651 * 7 6 5 27 27 C 1.47309 * 121.33583 * 179.97438 * 4 2 1 28 28 H 1.09004 * 109.46568 * 269.99738 * 1 2 3 29 29 H 1.08997 * 109.47083 * 29.99564 * 1 2 3 30 30 H 1.08997 * 109.46921 * 149.99650 * 1 2 3 31 31 H 1.09001 * 109.52252 * 343.21056 * 5 4 2 32 32 H 1.08997 * 109.52310 * 103.40560 * 5 4 2 33 33 H 1.08003 * 118.29338 * 169.16984 * 6 5 4 34 34 H 1.07997 * 119.78922 * 359.97438 * 9 8 7 35 35 H 0.96991 * 120.00198 * 180.02562 * 14 13 11 36 36 H 1.07997 * 119.85230 * 180.02562 * 19 10 9 37 37 H 1.07996 * 120.19703 * 0.05007 * 21 20 19 38 38 H 1.08006 * 119.53417 * 179.97438 * 22 21 20 39 39 H 1.07996 * 119.51754 * 180.02562 * 23 22 21 40 40 H 1.07999 * 120.12819 * 179.97438 * 24 23 22 41 41 H 1.08998 * 109.31993 * 101.55410 * 26 7 6 42 42 H 1.08997 * 109.31235 * 220.98265 * 26 7 6 43 43 H 1.09004 * 109.75793 * 358.04225 * 27 4 2 44 44 H 1.08993 * 109.76448 * 237.26979 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 1.4758 -2.4569 -0.0005 6 6 2.1486 -3.3879 0.9694 7 6 3.3081 -3.1330 1.5304 8 6 3.8620 -4.1404 2.4552 9 6 4.9039 -4.9530 2.0599 10 6 5.4375 -5.9120 2.9463 11 6 6.5086 -6.7295 2.5230 12 1 7.1775 -6.3849 1.7483 13 6 6.7032 -7.9858 3.1075 14 7 5.7290 -8.5586 3.7669 15 14 8.3537 -8.8455 2.9460 16 1 9.2807 -7.9934 2.1587 17 1 8.9241 -9.0796 4.2970 18 1 8.1687 -10.1466 2.2546 19 6 4.9227 -6.0660 4.2387 20 6 3.8620 -5.2655 4.6758 21 6 3.3311 -5.4071 5.9730 22 6 2.2979 -4.6125 6.3677 23 6 1.7578 -3.6603 5.5073 24 6 2.2485 -3.4967 4.2434 25 6 3.3087 -4.2936 3.8028 26 6 4.1099 -1.8886 1.2891 27 6 3.6536 -1.2014 -0.0011 28 1 -0.3632 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3633 -0.8899 -0.5139 31 1 0.4382 -2.3047 0.2967 32 1 1.5096 -2.8905 -1.0000 33 1 1.6507 -4.3129 1.2204 34 1 5.3166 -4.8514 1.0671 35 1 5.8640 -9.4293 4.1723 36 1 5.3463 -6.8061 4.9014 37 1 3.7412 -6.1412 6.6506 38 1 1.8916 -4.7225 7.3624 39 1 0.9390 -3.0421 5.8443 40 1 1.8192 -2.7543 3.5871 41 1 3.9770 -1.2056 2.1280 42 1 5.1647 -2.1501 1.2044 43 1 4.0459 -0.1850 -0.0361 44 1 4.0089 -1.7643 -0.8642 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241971189.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:58 Heat of formation + Delta-G solvation = 9.591908 kcal Electronic energy + Delta-G solvation = -26207.783484 eV Core-core repulsion = 22668.132569 eV Total energy + Delta-G solvation = -3539.650916 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.16747 -38.94238 -37.32766 -35.70713 -34.21048 -32.69931 -31.66046 -30.56193 -29.59079 -29.48282 -28.02182 -25.60023 -24.94820 -23.44618 -22.10383 -21.34533 -20.72228 -19.87734 -17.99447 -17.45894 -16.69179 -16.10902 -16.05738 -15.69092 -15.45066 -14.99556 -14.63020 -14.17069 -14.06224 -13.65575 -13.47001 -13.25014 -13.03302 -12.92044 -12.58806 -12.50776 -12.28905 -12.14002 -12.07509 -11.89429 -11.59073 -11.48718 -11.21224 -11.03648 -10.82492 -10.75866 -10.49616 -10.03124 -9.92136 -9.70995 -9.61362 -9.15713 -8.78312 -8.66865 -8.48689 -7.53793 -6.92167 -6.73311 -4.44579 1.63484 2.25495 2.34402 2.55108 2.91101 2.92850 2.99945 3.04329 3.20977 3.80907 3.97740 4.48437 4.74685 4.85533 4.98370 5.08916 5.12744 5.14329 5.22898 5.36128 5.43649 5.58720 5.61588 5.67588 5.72191 5.75516 5.81239 5.85394 6.02091 6.09250 6.22809 6.33505 6.40900 6.53193 6.64104 6.67529 6.87353 6.94988 6.97375 7.12745 7.25150 7.35054 7.38402 7.42386 7.49511 7.64644 7.85854 8.02558 8.08107 8.10985 8.46749 8.68619 8.75415 10.02033 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014235 B = 0.003708 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.577769 B = 7549.644367 C = 9013.875379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.515 3.485 3 O -0.554 6.554 4 N -0.613 5.613 5 C 0.145 3.855 6 C -0.192 4.192 7 C -0.034 4.034 8 C -0.063 4.063 9 C -0.130 4.130 10 C 0.101 3.899 11 C -0.450 4.450 12 H 0.080 0.920 13 C 0.074 3.926 14 N -0.778 5.778 15 Si 0.907 3.093 16 H -0.259 1.259 17 H -0.270 1.270 18 H -0.273 1.273 19 C -0.204 4.204 20 C 0.000 4.000 21 C -0.137 4.137 22 C -0.119 4.119 23 C -0.191 4.191 24 C -0.077 4.077 25 C -0.118 4.118 26 C -0.097 4.097 27 C 0.112 3.888 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.121 0.879 34 H 0.101 0.899 35 H 0.283 0.717 36 H 0.120 0.880 37 H 0.108 0.892 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.303 7.172 -4.988 11.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.305 3.695 3 O -0.432 6.432 4 N -0.347 5.347 5 C 0.023 3.977 6 C -0.211 4.211 7 C -0.035 4.035 8 C -0.064 4.064 9 C -0.149 4.149 10 C 0.099 3.901 11 C -0.479 4.479 12 H 0.098 0.902 13 C -0.145 4.145 14 N -0.402 5.402 15 Si 0.731 3.269 16 H -0.183 1.183 17 H -0.196 1.196 18 H -0.199 1.199 19 C -0.224 4.224 20 C 0.000 4.000 21 C -0.156 4.156 22 C -0.138 4.138 23 C -0.210 4.210 24 C -0.095 4.095 25 C -0.119 4.119 26 C -0.135 4.135 27 C -0.010 4.010 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.139 0.861 34 H 0.120 0.880 35 H 0.094 0.906 36 H 0.138 0.862 37 H 0.126 0.874 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.120 0.880 41 H 0.097 0.903 42 H 0.106 0.894 43 H 0.112 0.888 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.044 7.501 -4.887 11.392 hybrid contribution 0.624 -0.859 0.134 1.071 sum -6.420 6.642 -4.754 10.389 Atomic orbital electron populations 1.21951 0.91910 1.04708 1.04872 1.20738 0.90582 0.82861 0.75347 1.90697 1.70772 1.31019 1.50726 1.48279 1.07360 1.06019 1.73036 1.20583 0.96108 0.82048 0.98931 1.22564 0.97253 1.00735 1.00502 1.19514 0.94356 0.94171 0.95426 1.19633 0.97719 0.96545 0.92462 1.21365 0.96690 0.98350 0.98473 1.17379 0.91729 0.90340 0.90671 1.19673 1.10403 0.99591 1.18200 0.90166 1.25919 0.97817 0.97477 0.93325 1.69842 1.31131 1.14419 1.24824 0.86270 0.82103 0.79274 0.79230 1.18275 1.19551 1.19878 1.21171 1.00736 1.03993 0.96515 1.17923 0.95305 0.94328 0.92480 1.20924 0.98120 1.00422 0.96113 1.20485 0.97585 0.97147 0.98539 1.20338 1.03081 1.02286 0.95276 1.20616 0.95726 0.97813 0.95361 1.18494 0.99589 1.00238 0.93551 1.20784 1.00150 0.94794 0.97729 1.21704 0.79296 1.02320 0.97715 0.88764 0.89047 0.89936 0.89009 0.90546 0.86094 0.88041 0.90640 0.86183 0.87378 0.88188 0.88332 0.87957 0.90316 0.89412 0.88806 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.45 9.40 36.01 0.34 -1.11 16 2 C 0.52 6.58 7.83 -10.98 -0.09 6.49 16 3 O -0.55 -9.25 16.58 5.55 0.09 -9.15 16 4 N -0.61 -7.48 2.96 -174.13 -0.52 -8.00 16 5 C 0.15 1.53 6.25 -5.10 -0.03 1.49 16 6 C -0.19 -2.68 8.98 -36.28 -0.33 -3.01 16 7 C -0.03 -0.55 4.26 -102.97 -0.44 -0.99 16 8 C -0.06 -1.28 5.16 -102.91 -0.53 -1.81 16 9 C -0.13 -2.87 9.43 -38.63 -0.36 -3.23 16 10 C 0.10 2.52 5.55 -107.04 -0.59 1.92 16 11 C -0.45 -11.12 8.99 -37.82 -0.34 -11.46 16 12 H 0.08 1.88 7.91 -52.49 -0.42 1.47 16 13 C 0.07 1.75 5.08 -17.35 -0.09 1.67 16 14 N -0.78 -19.19 11.00 55.55 0.61 -18.58 16 15 Si 0.91 17.67 29.60 -169.99 -5.03 12.64 16 16 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 17 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 18 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 19 C -0.20 -5.13 8.38 -38.32 -0.32 -5.45 16 20 C 0.00 0.00 5.74 -106.89 -0.61 -0.61 16 21 C -0.14 -2.90 9.78 -39.32 -0.38 -3.28 16 22 C -0.12 -2.24 9.95 -39.95 -0.40 -2.64 16 23 C -0.19 -3.51 9.96 -39.81 -0.40 -3.91 16 24 C -0.08 -1.48 9.32 -39.62 -0.37 -1.85 16 25 C -0.12 -2.56 5.91 -104.62 -0.62 -3.17 16 26 C -0.10 -1.39 5.95 -28.16 -0.17 -1.56 16 27 C 0.11 1.42 6.49 -3.53 -0.02 1.40 16 28 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.50 6.45 -51.93 -0.34 0.17 16 31 H 0.09 0.75 5.99 -51.93 -0.31 0.44 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.12 1.80 7.94 -52.48 -0.42 1.38 16 34 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 35 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 36 H 0.12 3.15 6.15 -52.49 -0.32 2.83 16 37 H 0.11 2.14 8.06 -52.49 -0.42 1.72 16 38 H 0.10 1.59 8.06 -52.48 -0.42 1.17 16 39 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 40 H 0.10 1.79 6.90 -52.49 -0.36 1.43 16 41 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.09 1.24 8.13 -51.93 -0.42 0.82 16 43 H 0.09 1.24 7.07 -51.93 -0.37 0.87 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 361.65 15.07 5.45 5.45 Total: -1.00 -28.95 361.65 -11.04 -39.99 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -5.89 Total: 8.77 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: -5.75 Total: -31.12 kcal Atomic # 7 Polarization: -26.67 SS G_CDS: 0.10 Total: -26.58 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.09 Total: -9.15 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.03 Total: 12.64 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.95 -11.04 -39.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241971189.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.579 kcal (2) G-P(sol) polarization free energy of solvation -28.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds