Wall clock time and date at job start Tue Mar 31 2020 13:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21284 * 120.00116 * 2 1 4 4 N 1.34776 * 120.00235 * 180.02562 * 2 1 3 5 5 C 1.46991 * 121.32970 * 359.97438 * 4 2 1 6 6 C 1.50345 * 109.18781 * 223.11102 * 5 4 2 7 7 C 1.31306 * 123.40791 * 349.39457 * 6 5 4 8 8 C 1.47544 * 117.82227 * 180.58302 * 7 6 5 9 9 C 1.37908 * 120.41112 * 104.73831 * 8 7 6 10 10 C 1.41079 * 120.41120 * 179.70890 * 9 8 7 11 11 C 1.41234 * 119.47360 * 180.29568 * 10 9 8 12 12 H 1.07997 * 120.00174 * 25.69497 * 11 10 9 13 13 C 1.39918 * 119.99785 * 205.68800 * 11 10 9 14 14 N 1.30839 * 120.00249 * 18.23571 * 13 11 10 15 15 Si 1.86801 * 119.99878 * 198.22546 * 13 11 10 16 16 H 1.48497 * 109.47039 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46881 * 120.00500 * 15 13 11 18 18 H 1.48502 * 109.47390 * 240.00480 * 15 13 11 19 19 C 1.39956 * 121.05285 * 0.27125 * 10 9 8 20 20 C 1.39893 * 120.29379 * 0.02562 * 19 10 9 21 21 C 1.40881 * 121.05962 * 179.97438 * 20 19 10 22 22 C 1.36188 * 119.61434 * 180.02562 * 21 20 19 23 23 C 1.39242 * 120.93995 * 359.97438 * 22 21 20 24 24 C 1.36559 * 120.96115 * 0.02626 * 23 22 21 25 25 C 1.39755 * 119.74354 * 359.95378 * 24 23 22 26 26 C 1.49990 * 124.35957 * 0.30651 * 7 6 5 27 27 C 1.47309 * 121.33583 * 179.97438 * 4 2 1 28 28 H 1.09004 * 109.46568 * 269.99738 * 1 2 3 29 29 H 1.08997 * 109.47083 * 29.99564 * 1 2 3 30 30 H 1.08997 * 109.46921 * 149.99650 * 1 2 3 31 31 H 1.09001 * 109.52252 * 343.21056 * 5 4 2 32 32 H 1.08997 * 109.52310 * 103.40560 * 5 4 2 33 33 H 1.08003 * 118.29338 * 169.16984 * 6 5 4 34 34 H 1.07997 * 119.78922 * 359.97438 * 9 8 7 35 35 H 0.96991 * 120.00198 * 180.02562 * 14 13 11 36 36 H 1.07997 * 119.85230 * 180.02562 * 19 10 9 37 37 H 1.07996 * 120.19703 * 0.05007 * 21 20 19 38 38 H 1.08006 * 119.53417 * 179.97438 * 22 21 20 39 39 H 1.07996 * 119.51754 * 180.02562 * 23 22 21 40 40 H 1.07999 * 120.12819 * 179.97438 * 24 23 22 41 41 H 1.08998 * 109.31993 * 101.55410 * 26 7 6 42 42 H 1.08997 * 109.31235 * 220.98265 * 26 7 6 43 43 H 1.09004 * 109.75793 * 358.04225 * 27 4 2 44 44 H 1.08993 * 109.76448 * 237.26979 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 1.4758 -2.4569 -0.0005 6 6 2.1486 -3.3879 0.9694 7 6 3.3081 -3.1330 1.5304 8 6 3.8620 -4.1404 2.4552 9 6 4.9039 -4.9530 2.0599 10 6 5.4375 -5.9120 2.9463 11 6 6.5086 -6.7295 2.5230 12 1 7.1775 -6.3849 1.7483 13 6 6.7032 -7.9858 3.1075 14 7 5.7290 -8.5586 3.7669 15 14 8.3537 -8.8455 2.9460 16 1 9.2807 -7.9934 2.1587 17 1 8.9241 -9.0796 4.2970 18 1 8.1687 -10.1466 2.2546 19 6 4.9227 -6.0660 4.2387 20 6 3.8620 -5.2655 4.6758 21 6 3.3311 -5.4071 5.9730 22 6 2.2979 -4.6125 6.3677 23 6 1.7578 -3.6603 5.5073 24 6 2.2485 -3.4967 4.2434 25 6 3.3087 -4.2936 3.8028 26 6 4.1099 -1.8886 1.2891 27 6 3.6536 -1.2014 -0.0011 28 1 -0.3632 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3633 -0.8899 -0.5139 31 1 0.4382 -2.3047 0.2967 32 1 1.5096 -2.8905 -1.0000 33 1 1.6507 -4.3129 1.2204 34 1 5.3166 -4.8514 1.0671 35 1 5.8640 -9.4293 4.1723 36 1 5.3463 -6.8061 4.9014 37 1 3.7412 -6.1412 6.6506 38 1 1.8916 -4.7225 7.3624 39 1 0.9390 -3.0421 5.8443 40 1 1.8192 -2.7543 3.5871 41 1 3.9770 -1.2056 2.1280 42 1 5.1647 -2.1501 1.2044 43 1 4.0459 -0.1850 -0.0361 44 1 4.0089 -1.7643 -0.8642 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241971189.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:57 Heat of formation + Delta-G solvation = -3.573175 kcal Electronic energy + Delta-G solvation = -26208.354365 eV Core-core repulsion = 22668.132569 eV Total energy + Delta-G solvation = -3540.221796 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.22719 -40.46955 -38.50751 -37.35850 -35.63004 -34.22421 -32.77552 -31.94612 -31.25552 -30.42439 -29.46528 -27.20208 -26.24725 -24.49181 -23.70068 -22.99584 -22.18467 -21.03398 -19.55142 -18.49707 -17.99039 -17.79721 -17.29127 -16.92373 -16.62360 -16.44092 -16.14245 -15.52626 -15.24332 -14.80426 -14.73031 -14.58245 -14.27869 -14.21144 -14.04510 -13.72443 -13.65934 -13.48052 -13.21258 -12.98299 -12.90605 -12.78575 -12.71174 -12.55042 -12.43593 -12.08935 -12.00768 -11.65609 -11.38169 -11.22996 -10.90956 -10.88154 -10.32317 -9.85377 -9.62729 -9.24477 -8.68255 -8.40523 -6.31279 0.01199 0.59614 1.10757 1.33580 1.37786 1.51054 1.57019 1.62144 2.02368 2.16392 2.29855 3.03028 3.59708 3.72790 3.76528 4.00504 4.06506 4.13291 4.20410 4.28161 4.31970 4.35497 4.49258 4.60315 4.63070 4.66031 4.71480 4.75176 4.76003 4.82127 4.90717 4.97805 5.00523 5.10698 5.18001 5.19430 5.31869 5.42582 5.46158 5.59822 5.69992 5.74274 5.86071 5.92397 6.03026 6.09049 6.25438 6.44414 6.46532 6.66338 6.87092 6.96518 7.14881 8.28391 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014235 B = 0.003708 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.577769 B = 7549.644367 C = 9013.875379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.508 3.492 3 O -0.602 6.602 4 N -0.614 5.614 5 C 0.146 3.854 6 C -0.162 4.162 7 C -0.066 4.066 8 C -0.044 4.044 9 C -0.157 4.157 10 C 0.079 3.921 11 C -0.487 4.487 12 H 0.080 0.920 13 C 0.034 3.966 14 N -0.815 5.815 15 Si 0.979 3.021 16 H -0.255 1.255 17 H -0.268 1.268 18 H -0.264 1.264 19 C -0.237 4.237 20 C -0.023 4.023 21 C -0.165 4.165 22 C -0.107 4.107 23 C -0.182 4.182 24 C -0.078 4.078 25 C -0.139 4.139 26 C -0.087 4.087 27 C 0.116 3.884 28 H 0.107 0.893 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.129 0.871 32 H 0.103 0.897 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.288 0.712 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.126 0.874 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.154 8.467 -5.669 14.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.300 3.700 3 O -0.484 6.484 4 N -0.347 5.347 5 C 0.025 3.975 6 C -0.181 4.181 7 C -0.066 4.066 8 C -0.044 4.044 9 C -0.176 4.176 10 C 0.077 3.923 11 C -0.516 4.516 12 H 0.098 0.902 13 C -0.181 4.181 14 N -0.440 5.440 15 Si 0.800 3.200 16 H -0.179 1.179 17 H -0.193 1.193 18 H -0.189 1.189 19 C -0.258 4.258 20 C -0.023 4.023 21 C -0.183 4.183 22 C -0.125 4.125 23 C -0.200 4.200 24 C -0.095 4.095 25 C -0.139 4.139 26 C -0.125 4.125 27 C -0.007 4.007 28 H 0.126 0.874 29 H 0.115 0.885 30 H 0.130 0.870 31 H 0.146 0.854 32 H 0.121 0.879 33 H 0.133 0.867 34 H 0.127 0.873 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.125 0.875 38 H 0.154 0.846 39 H 0.157 0.843 40 H 0.143 0.857 41 H 0.084 0.916 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.920 8.787 -5.571 14.376 hybrid contribution 1.282 -1.145 0.427 1.771 sum -8.638 7.642 -5.144 12.629 Atomic orbital electron populations 1.22000 0.88039 1.06494 1.06198 1.21601 0.92389 0.82025 0.74019 1.90681 1.72107 1.32685 1.52904 1.48397 1.07029 1.06743 1.72513 1.20845 0.97037 0.80415 0.99190 1.22804 0.95681 1.00630 0.98981 1.19402 0.95924 0.94336 0.96934 1.20011 0.95962 0.95836 0.92578 1.21459 0.98290 0.99172 0.98674 1.17710 0.92197 0.91300 0.91122 1.19921 1.11431 1.00729 1.19531 0.90161 1.26749 1.01085 0.97765 0.92549 1.69917 1.33078 1.15029 1.26011 0.85201 0.77435 0.78191 0.79191 1.17884 1.19256 1.18911 1.21049 1.02739 1.05166 0.96810 1.18224 0.95284 0.94803 0.94015 1.21069 0.99735 1.01918 0.95588 1.20911 0.95841 0.95608 1.00139 1.20848 1.03146 1.01571 0.94456 1.20862 0.94772 0.97567 0.96344 1.18898 1.00570 1.00394 0.94056 1.20644 0.99672 0.93866 0.98289 1.21598 0.80274 1.01692 0.97097 0.87435 0.88499 0.87035 0.85365 0.87894 0.86709 0.87283 0.90162 0.88698 0.87523 0.84617 0.84309 0.85653 0.91590 0.90170 0.89698 0.89511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 9.40 71.24 0.67 -1.36 16 2 C 0.51 11.51 7.83 87.66 0.69 12.19 16 3 O -0.60 -19.37 16.58 -3.04 -0.05 -19.42 16 4 N -0.61 -13.06 2.96 -823.22 -2.44 -15.49 16 5 C 0.15 2.39 6.25 85.43 0.53 2.92 16 6 C -0.16 -4.06 8.98 25.23 0.23 -3.84 16 7 C -0.07 -2.04 4.26 -17.97 -0.08 -2.12 16 8 C -0.04 -1.79 5.16 -18.75 -0.10 -1.89 16 9 C -0.16 -7.31 9.43 22.89 0.22 -7.09 16 10 C 0.08 4.20 5.55 -21.43 -0.12 4.09 16 11 C -0.49 -25.72 8.99 23.41 0.21 -25.51 16 12 H 0.08 4.03 7.91 -2.91 -0.02 4.01 16 13 C 0.03 1.71 5.08 85.25 0.43 2.15 16 14 N -0.82 -42.76 11.00 21.82 0.24 -42.52 16 15 Si 0.98 37.76 29.60 68.60 2.03 39.79 16 16 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 17 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 18 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 19 C -0.24 -12.83 8.38 23.09 0.19 -12.64 16 20 C -0.02 -1.12 5.74 -21.33 -0.12 -1.24 16 21 C -0.16 -7.05 9.78 22.44 0.22 -6.83 16 22 C -0.11 -3.76 9.95 22.03 0.22 -3.54 16 23 C -0.18 -6.00 9.96 22.12 0.22 -5.78 16 24 C -0.08 -2.80 9.32 22.24 0.21 -2.59 16 25 C -0.14 -6.03 5.91 -19.86 -0.12 -6.14 16 26 C -0.09 -2.46 5.95 29.67 0.18 -2.28 16 27 C 0.12 2.78 6.49 86.27 0.56 3.34 16 28 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.11 0.69 6.45 -2.39 -0.02 0.67 16 31 H 0.13 1.28 5.99 -2.39 -0.01 1.26 16 32 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.12 3.08 7.94 -2.91 -0.02 3.06 16 34 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 35 H 0.29 13.64 8.30 -92.72 -0.77 12.87 16 36 H 0.10 5.46 6.15 -2.91 -0.02 5.44 16 37 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 38 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 39 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 40 H 0.13 3.92 6.90 -2.91 -0.02 3.90 16 41 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.08 2.34 8.13 -2.39 -0.02 2.32 16 43 H 0.08 2.21 7.07 -2.39 -0.02 2.19 16 44 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -68.81 361.65 5.03 -63.78 By element: Atomic # 1 Polarization: 31.03 SS G_CDS: 1.01 Total: 32.04 kcal Atomic # 6 Polarization: -62.41 SS G_CDS: 4.24 Total: -58.17 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: -2.20 Total: -58.01 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.05 Total: -19.42 kcal Atomic # 14 Polarization: 37.76 SS G_CDS: 2.03 Total: 39.79 kcal Total: -68.81 5.03 -63.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241971189.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.203 kcal (2) G-P(sol) polarization free energy of solvation -68.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds