Wall clock time and date at job start Tue Mar 31 2020 12:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42899 * 109.47553 * 2 1 4 4 C 1.35833 * 117.00009 * 179.97438 * 3 2 1 5 5 C 1.38565 * 120.12565 * 359.97438 * 4 3 2 6 6 C 1.38193 * 120.06963 * 180.02562 * 5 4 3 7 7 C 1.50704 * 119.83530 * 179.97438 * 6 5 4 8 8 C 1.38403 * 120.32930 * 359.97438 * 6 5 4 9 9 C 1.37981 * 120.24752 * 359.72410 * 8 6 5 10 10 C 1.39410 * 119.91878 * 0.55418 * 9 8 6 11 11 C 1.48123 * 120.15910 * 179.72440 * 10 9 8 12 12 C 1.39196 * 120.28544 * 64.74096 * 11 10 9 13 13 C 1.38324 * 120.10014 * 179.97438 * 12 11 10 14 14 C 1.38046 * 120.77345 * 0.02562 * 13 12 11 15 15 C 1.39123 * 120.24543 * 359.97307 * 14 13 12 16 16 N 1.38175 * 132.73984 * 179.97438 * 15 14 13 17 17 H 0.96999 * 124.70672 * 0.02562 * 16 15 14 18 18 C 1.35597 * 110.59757 * 180.02562 * 16 15 14 19 19 C 1.38995 * 109.24429 * 0.02562 * 18 16 15 20 20 C 1.40967 * 126.93309 * 179.73742 * 19 18 16 21 21 H 1.07994 * 119.99819 * 180.02562 * 20 19 18 22 22 C 1.39679 * 119.99656 * 0.02610 * 20 19 18 23 23 N 1.31075 * 119.99863 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99669 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46934 * 60.00088 * 24 22 20 26 26 H 1.48499 * 109.46915 * 179.97438 * 24 22 20 27 27 H 1.48491 * 109.46891 * 300.00035 * 24 22 20 28 28 C 1.40221 * 120.28289 * 244.72526 * 11 10 9 29 29 H 1.09001 * 109.47197 * 300.00032 * 1 2 3 30 30 H 1.09001 * 109.47116 * 59.99983 * 1 2 3 31 31 H 1.09002 * 109.47910 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46729 * 239.99815 * 2 1 3 33 33 H 1.08998 * 109.46775 * 120.00403 * 2 1 3 34 34 H 1.08006 * 119.96417 * 359.97438 * 5 4 3 35 35 H 1.09000 * 109.46872 * 89.99879 * 7 6 5 36 36 H 1.08996 * 109.47174 * 210.00069 * 7 6 5 37 37 H 1.08996 * 109.47208 * 330.00121 * 7 6 5 38 38 H 1.07995 * 119.87861 * 180.02562 * 8 6 5 39 39 H 1.07993 * 120.04217 * 180.29891 * 9 8 6 40 40 H 1.08000 * 119.95252 * 0.02562 * 12 11 10 41 41 H 1.07998 * 119.60929 * 180.02562 * 13 12 11 42 42 H 1.08005 * 119.87417 * 180.02562 * 14 13 12 43 43 H 1.08001 * 125.38062 * 179.97438 * 18 16 15 44 44 H 0.97003 * 119.99632 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3530 1.5251 0.0005 5 6 4.1994 0.4280 0.0016 6 6 5.5693 0.6103 0.0027 7 6 6.4849 -0.5866 0.0044 8 6 6.1045 1.8867 0.0022 9 6 5.2740 2.9886 -0.0051 10 6 3.8906 2.8167 -0.0004 11 6 2.9941 3.9959 -0.0020 12 6 2.9744 4.8611 -1.0922 13 6 2.1354 5.9608 -1.0899 14 6 1.3098 6.2171 -0.0137 15 6 1.3107 5.3677 1.0881 16 7 0.6087 5.3747 2.2782 17 1 -0.0473 6.0440 2.5286 18 6 0.9637 4.3163 3.0478 19 6 1.9255 3.5668 2.3805 20 6 2.5557 2.3934 2.8422 21 1 3.2927 1.8986 2.2272 22 6 2.2268 1.8709 4.0951 23 7 1.3319 2.4713 4.8413 24 14 3.0624 0.3164 4.7073 25 1 4.5283 0.5404 4.7855 26 1 2.5421 -0.0274 6.0550 27 1 2.7815 -0.7991 3.7683 28 6 2.1579 4.2499 1.0945 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3635 -1.0276 -0.0005 32 1 1.8932 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8899 34 1 3.7881 -0.5707 0.0024 35 1 6.7066 -0.8760 -1.0228 36 1 7.4121 -0.3341 0.5189 37 1 5.9984 -1.4156 0.5184 38 1 7.1761 2.0207 0.0026 39 1 5.6952 3.9830 -0.0104 40 1 3.6145 4.6731 -1.9415 41 1 2.1261 6.6267 -1.9402 42 1 0.6601 7.0798 -0.0274 43 1 0.5632 4.0915 4.0253 44 1 1.1038 2.1086 5.7115 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243407636.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:11 Heat of formation + Delta-G solvation = 30.622557 kcal Electronic energy + Delta-G solvation = -27624.471332 eV Core-core repulsion = 24085.732374 eV Total energy + Delta-G solvation = -3538.738958 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.99348 -39.17870 -37.11390 -35.69104 -33.58852 -32.69968 -31.18254 -30.27590 -29.11694 -28.51537 -27.68077 -26.06480 -24.49058 -23.39963 -21.89571 -21.21079 -20.38918 -20.26993 -19.29880 -17.47203 -16.70451 -15.88369 -15.45996 -15.36495 -15.31410 -14.77906 -14.26454 -14.05189 -13.77392 -13.51213 -13.19037 -13.04466 -12.89921 -12.63546 -12.45430 -12.43557 -12.22174 -11.93891 -11.55035 -11.29637 -11.17226 -11.15323 -11.01502 -10.97084 -10.77029 -10.61015 -10.34759 -10.15495 -10.12733 -9.61474 -9.47188 -9.29913 -8.39361 -8.06026 -7.34073 -6.94241 -6.43812 -6.38606 -3.85252 1.71883 2.04465 2.34409 2.72970 3.12745 3.17635 3.22639 3.83851 4.15297 4.27471 4.31327 4.66421 4.87369 5.13041 5.28763 5.34777 5.39544 5.47773 5.59144 5.65517 5.70888 5.76363 5.80255 5.80847 5.89602 6.01074 6.04036 6.06666 6.17888 6.22793 6.26895 6.50744 6.54638 6.56262 6.71483 6.85280 6.93507 6.97925 7.07675 7.27830 7.31197 7.36287 7.46762 7.61379 7.75551 7.96828 8.13592 8.17667 8.44199 8.81336 9.14814 9.27353 9.34612 10.59742 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.008932 B = 0.007637 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3133.963493 B = 3665.697227 C = 5086.106839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.058 3.942 3 O -0.282 6.282 4 C 0.174 3.826 5 C -0.221 4.221 6 C -0.059 4.059 7 C -0.110 4.110 8 C -0.167 4.167 9 C -0.069 4.069 10 C -0.057 4.057 11 C 0.016 3.984 12 C -0.176 4.176 13 C -0.117 4.117 14 C -0.153 4.153 15 C 0.083 3.917 16 N -0.594 5.594 17 H 0.392 0.608 18 C -0.098 4.098 19 C 0.026 3.974 20 C -0.396 4.396 21 H 0.074 0.926 22 C 0.054 3.946 23 N -0.837 5.837 24 Si 0.901 3.099 25 H -0.269 1.269 26 H -0.283 1.283 27 H -0.271 1.271 28 C -0.099 4.099 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.121 0.879 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.116 0.884 39 H 0.124 0.876 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.190 0.810 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.008 -3.227 -8.140 9.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.018 4.018 3 O -0.194 6.194 4 C 0.128 3.872 5 C -0.239 4.239 6 C -0.059 4.059 7 C -0.167 4.167 8 C -0.185 4.185 9 C -0.087 4.087 10 C -0.058 4.058 11 C 0.015 3.985 12 C -0.196 4.196 13 C -0.136 4.136 14 C -0.175 4.175 15 C -0.028 4.028 16 N -0.195 5.195 17 H 0.225 0.775 18 C -0.222 4.222 19 C 0.021 3.979 20 C -0.429 4.429 21 H 0.092 0.908 22 C -0.155 4.155 23 N -0.469 5.469 24 Si 0.728 3.272 25 H -0.194 1.194 26 H -0.208 1.208 27 H -0.197 1.197 28 C -0.106 4.106 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.138 0.862 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.134 0.866 39 H 0.142 0.858 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.116 0.884 43 H 0.207 0.793 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.663 -3.157 -7.764 8.794 hybrid contribution 0.072 -0.650 0.611 0.895 sum 2.734 -3.807 -7.153 8.551 Atomic orbital electron populations 1.21703 0.93242 1.01806 1.03795 1.22642 0.95822 0.83011 1.00290 1.86260 1.18283 1.27590 1.87261 1.18824 0.82683 0.92820 0.92889 1.20927 0.93624 0.97707 1.11686 1.19555 0.93196 0.94800 0.98329 1.20751 0.98501 0.95751 1.01696 1.20657 0.99058 0.91794 1.07024 1.20947 0.91435 0.98653 0.97647 1.18091 0.92583 0.90414 1.04713 1.17822 0.94929 0.92649 0.93101 1.20520 1.03606 0.97312 0.98183 1.20261 0.98054 0.98032 0.97295 1.19803 1.03781 1.00087 0.93849 1.18171 0.97575 0.98120 0.88913 1.41541 1.37251 1.25772 1.14927 0.77498 1.23376 1.07388 0.91428 0.99989 1.17963 0.96132 0.94850 0.88936 1.18803 1.18527 1.05989 0.99629 0.90753 1.25552 0.95124 0.98133 0.96688 1.69454 1.28720 1.38215 1.10551 0.86443 0.80374 0.82411 0.77959 1.19435 1.20805 1.19664 1.19323 0.98490 0.96714 0.96032 0.90817 0.92072 0.91291 0.93264 0.92267 0.86154 0.91586 0.91727 0.91980 0.86616 0.85817 0.87785 0.87632 0.88358 0.79341 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 10.28 37.15 0.38 -1.87 16 2 C 0.06 0.98 5.46 37.15 0.20 1.19 16 3 O -0.28 -5.99 8.86 -19.21 -0.17 -6.16 16 4 C 0.17 3.60 4.31 -38.84 -0.17 3.43 16 5 C -0.22 -3.97 8.68 -39.48 -0.34 -4.31 16 6 C -0.06 -0.96 5.88 -104.58 -0.62 -1.57 16 7 C -0.11 -1.37 10.00 36.01 0.36 -1.01 16 8 C -0.17 -2.74 9.68 -39.61 -0.38 -3.13 16 9 C -0.07 -1.27 9.73 -39.24 -0.38 -1.65 16 10 C -0.06 -1.21 4.33 -104.78 -0.45 -1.66 16 11 C 0.02 0.35 4.95 -104.74 -0.52 -0.17 16 12 C -0.18 -3.49 9.73 -39.19 -0.38 -3.87 16 13 C -0.12 -2.18 10.00 -39.62 -0.40 -2.58 16 14 C -0.15 -3.04 10.06 -39.32 -0.40 -3.43 16 15 C 0.08 1.91 7.23 -83.92 -0.61 1.30 16 16 N -0.59 -13.23 5.99 -9.81 -0.06 -13.29 16 17 H 0.39 7.21 8.96 -40.82 -0.37 6.84 16 18 C -0.10 -2.52 10.89 -15.61 -0.17 -2.69 16 19 C 0.03 0.71 6.10 -104.83 -0.64 0.07 16 20 C -0.40 -10.72 8.29 -38.01 -0.32 -11.03 16 21 H 0.07 1.99 4.71 -52.49 -0.25 1.75 16 22 C 0.05 1.40 5.49 -17.34 -0.10 1.30 16 23 N -0.84 -22.03 10.33 55.54 0.57 -21.45 16 24 Si 0.90 20.17 29.56 -169.99 -5.02 15.14 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 28 C -0.10 -2.46 5.88 -104.64 -0.61 -3.08 16 29 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.71 7.67 -51.93 -0.40 0.31 16 33 H 0.06 1.03 7.66 -51.93 -0.40 0.63 16 34 H 0.12 1.92 6.30 -52.48 -0.33 1.59 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 37 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 38 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 39 H 0.12 2.08 8.06 -52.49 -0.42 1.65 16 40 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 41 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 42 H 0.10 1.67 8.06 -52.48 -0.42 1.24 16 43 H 0.19 5.00 5.68 -52.49 -0.30 4.71 16 44 H 0.27 6.64 8.30 -40.82 -0.34 6.30 16 LS Contribution 361.34 15.07 5.45 5.45 Total: -1.00 -30.03 361.34 -10.58 -40.61 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -5.82 Total: 14.47 kcal Atomic # 6 Polarization: -29.24 SS G_CDS: -5.53 Total: -34.77 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: 0.52 Total: -34.75 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: -0.17 Total: -6.16 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.03 -10.58 -40.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243407636.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.235 kcal (2) G-P(sol) polarization free energy of solvation -30.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds