Wall clock time and date at job start Tue Mar 31 2020 12:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42899 * 109.47553 * 2 1 4 4 C 1.35833 * 117.00009 * 179.97438 * 3 2 1 5 5 C 1.38565 * 120.12565 * 359.97438 * 4 3 2 6 6 C 1.38193 * 120.06963 * 180.02562 * 5 4 3 7 7 C 1.50704 * 119.83530 * 179.97438 * 6 5 4 8 8 C 1.38403 * 120.32930 * 359.97438 * 6 5 4 9 9 C 1.37981 * 120.24752 * 359.72410 * 8 6 5 10 10 C 1.39410 * 119.91878 * 0.55418 * 9 8 6 11 11 C 1.48123 * 120.15910 * 179.72440 * 10 9 8 12 12 C 1.39196 * 120.28544 * 64.74096 * 11 10 9 13 13 C 1.38324 * 120.10014 * 179.97438 * 12 11 10 14 14 C 1.38046 * 120.77345 * 0.02562 * 13 12 11 15 15 C 1.39123 * 120.24543 * 359.97307 * 14 13 12 16 16 N 1.38175 * 132.73984 * 179.97438 * 15 14 13 17 17 H 0.96999 * 124.70672 * 0.02562 * 16 15 14 18 18 C 1.35597 * 110.59757 * 180.02562 * 16 15 14 19 19 C 1.38995 * 109.24429 * 0.02562 * 18 16 15 20 20 C 1.40967 * 126.93309 * 179.73742 * 19 18 16 21 21 H 1.07994 * 119.99819 * 180.02562 * 20 19 18 22 22 C 1.39679 * 119.99656 * 0.02610 * 20 19 18 23 23 N 1.31075 * 119.99863 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99669 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46934 * 60.00088 * 24 22 20 26 26 H 1.48499 * 109.46915 * 179.97438 * 24 22 20 27 27 H 1.48491 * 109.46891 * 300.00035 * 24 22 20 28 28 C 1.40221 * 120.28289 * 244.72526 * 11 10 9 29 29 H 1.09001 * 109.47197 * 300.00032 * 1 2 3 30 30 H 1.09001 * 109.47116 * 59.99983 * 1 2 3 31 31 H 1.09002 * 109.47910 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46729 * 239.99815 * 2 1 3 33 33 H 1.08998 * 109.46775 * 120.00403 * 2 1 3 34 34 H 1.08006 * 119.96417 * 359.97438 * 5 4 3 35 35 H 1.09000 * 109.46872 * 89.99879 * 7 6 5 36 36 H 1.08996 * 109.47174 * 210.00069 * 7 6 5 37 37 H 1.08996 * 109.47208 * 330.00121 * 7 6 5 38 38 H 1.07995 * 119.87861 * 180.02562 * 8 6 5 39 39 H 1.07993 * 120.04217 * 180.29891 * 9 8 6 40 40 H 1.08000 * 119.95252 * 0.02562 * 12 11 10 41 41 H 1.07998 * 119.60929 * 180.02562 * 13 12 11 42 42 H 1.08005 * 119.87417 * 180.02562 * 14 13 12 43 43 H 1.08001 * 125.38062 * 179.97438 * 18 16 15 44 44 H 0.97003 * 119.99632 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3530 1.5251 0.0005 5 6 4.1994 0.4280 0.0016 6 6 5.5693 0.6103 0.0027 7 6 6.4849 -0.5866 0.0044 8 6 6.1045 1.8867 0.0022 9 6 5.2740 2.9886 -0.0051 10 6 3.8906 2.8167 -0.0004 11 6 2.9941 3.9959 -0.0020 12 6 2.9744 4.8611 -1.0922 13 6 2.1354 5.9608 -1.0899 14 6 1.3098 6.2171 -0.0137 15 6 1.3107 5.3677 1.0881 16 7 0.6087 5.3747 2.2782 17 1 -0.0473 6.0440 2.5286 18 6 0.9637 4.3163 3.0478 19 6 1.9255 3.5668 2.3805 20 6 2.5557 2.3934 2.8422 21 1 3.2927 1.8986 2.2272 22 6 2.2268 1.8709 4.0951 23 7 1.3319 2.4713 4.8413 24 14 3.0624 0.3164 4.7073 25 1 4.5283 0.5404 4.7855 26 1 2.5421 -0.0274 6.0550 27 1 2.7815 -0.7991 3.7683 28 6 2.1579 4.2499 1.0945 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3635 -1.0276 -0.0005 32 1 1.8932 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8899 34 1 3.7881 -0.5707 0.0024 35 1 6.7066 -0.8760 -1.0228 36 1 7.4121 -0.3341 0.5189 37 1 5.9984 -1.4156 0.5184 38 1 7.1761 2.0207 0.0026 39 1 5.6952 3.9830 -0.0104 40 1 3.6145 4.6731 -1.9415 41 1 2.1261 6.6267 -1.9402 42 1 0.6601 7.0798 -0.0274 43 1 0.5632 4.0915 4.0253 44 1 1.1038 2.1086 5.7115 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243407636.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:11 Heat of formation + Delta-G solvation = 16.293141 kcal Electronic energy + Delta-G solvation = -27625.092702 eV Core-core repulsion = 24085.732374 eV Total energy + Delta-G solvation = -3539.360328 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.55869 -40.72401 -38.49765 -37.30412 -35.41202 -34.16302 -32.49925 -31.87440 -30.47114 -30.13554 -29.39791 -27.50089 -26.28087 -24.71235 -23.40260 -22.58922 -22.02989 -21.78342 -21.12190 -19.02828 -18.20320 -17.69683 -17.08940 -16.82265 -16.73551 -16.33471 -15.94854 -15.59666 -15.08656 -14.86500 -14.67959 -14.47216 -14.37554 -14.29006 -14.05778 -13.76761 -13.38142 -13.10740 -13.05185 -12.96282 -12.93337 -12.61835 -12.50200 -12.43079 -12.28283 -12.10239 -11.92145 -11.70254 -11.49377 -11.44912 -11.18619 -11.14040 -10.01906 -9.51645 -8.81042 -8.63935 -8.31571 -8.22976 -5.82940 0.27521 0.64404 0.80780 1.09018 1.33789 1.36059 1.44238 2.29902 2.37890 2.50143 2.89140 2.99457 3.20264 3.77512 3.87130 4.00874 4.06853 4.11803 4.21158 4.29905 4.35778 4.41413 4.52518 4.55427 4.67095 4.69784 4.81698 4.88749 4.90811 4.93941 4.95422 5.00134 5.11199 5.21959 5.24396 5.37599 5.41649 5.46104 5.55651 5.64272 5.75176 5.77247 5.93091 6.05536 6.09018 6.12920 6.35057 6.64423 6.75654 6.92286 7.26096 7.34474 7.51192 8.67405 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.008932 B = 0.007637 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3133.963493 B = 3665.697227 C = 5086.106839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.051 3.949 3 O -0.314 6.314 4 C 0.154 3.846 5 C -0.231 4.231 6 C -0.058 4.058 7 C -0.108 4.108 8 C -0.167 4.167 9 C -0.078 4.078 10 C -0.093 4.093 11 C 0.002 3.998 12 C -0.176 4.176 13 C -0.104 4.104 14 C -0.158 4.158 15 C 0.070 3.930 16 N -0.590 5.590 17 H 0.408 0.592 18 C -0.118 4.118 19 C -0.005 4.005 20 C -0.415 4.415 21 H 0.069 0.931 22 C 0.010 3.990 23 N -0.862 5.862 24 Si 0.957 3.043 25 H -0.270 1.270 26 H -0.273 1.273 27 H -0.263 1.263 28 C -0.137 4.137 29 H 0.039 0.961 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.135 0.865 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.149 0.851 39 H 0.133 0.867 40 H 0.128 0.872 41 H 0.150 0.850 42 H 0.131 0.869 43 H 0.176 0.824 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.643 -3.890 -10.180 11.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.024 4.024 3 O -0.227 6.227 4 C 0.107 3.893 5 C -0.250 4.250 6 C -0.058 4.058 7 C -0.165 4.165 8 C -0.185 4.185 9 C -0.096 4.096 10 C -0.093 4.093 11 C 0.001 3.999 12 C -0.196 4.196 13 C -0.123 4.123 14 C -0.180 4.180 15 C -0.041 4.041 16 N -0.194 5.194 17 H 0.243 0.757 18 C -0.242 4.242 19 C -0.011 4.011 20 C -0.448 4.448 21 H 0.088 0.912 22 C -0.196 4.196 23 N -0.495 5.495 24 Si 0.781 3.219 25 H -0.195 1.195 26 H -0.198 1.198 27 H -0.188 1.188 28 C -0.144 4.144 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.123 0.877 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.153 0.847 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.166 0.834 39 H 0.151 0.849 40 H 0.146 0.854 41 H 0.168 0.832 42 H 0.149 0.851 43 H 0.192 0.808 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.286 -3.799 -9.817 11.366 hybrid contribution -0.393 -0.380 1.082 1.212 sum 3.893 -4.179 -8.735 10.437 Atomic orbital electron populations 1.21710 0.92343 1.03646 1.02218 1.22869 0.96598 0.81853 1.01033 1.86214 1.19131 1.29740 1.87638 1.19073 0.82776 0.93538 0.93867 1.21213 0.94390 0.97728 1.11670 1.20076 0.93154 0.96372 0.96183 1.20832 0.98144 0.94024 1.03464 1.21049 1.00485 0.91258 1.05698 1.21180 0.90824 0.99985 0.97601 1.18304 0.93544 0.90396 1.07079 1.18176 0.94877 0.93764 0.93074 1.20927 1.03732 0.97014 0.97948 1.20802 0.96000 0.97631 0.97891 1.20213 1.04411 1.00461 0.92869 1.18628 0.97299 0.98457 0.89687 1.41343 1.37812 1.25534 1.14676 0.75683 1.23149 1.08073 0.92937 1.00079 1.18343 0.96785 0.95441 0.90500 1.18949 1.18995 1.06612 1.00222 0.91242 1.26289 0.95741 1.00836 0.96694 1.69560 1.29678 1.39391 1.10826 0.85587 0.79165 0.79274 0.77876 1.19479 1.19804 1.18770 1.19602 1.00559 0.97767 0.96442 0.94181 0.91718 0.87708 0.90420 0.93339 0.84677 0.89302 0.90169 0.91460 0.83380 0.84944 0.85401 0.83240 0.85105 0.80774 0.91709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.37 10.28 71.98 0.74 -3.63 16 2 C 0.05 1.76 5.46 71.98 0.39 2.15 16 3 O -0.31 -13.78 8.86 -91.67 -0.81 -14.60 16 4 C 0.15 6.43 4.31 22.75 0.10 6.52 16 5 C -0.23 -8.15 8.68 22.34 0.19 -7.95 16 6 C -0.06 -1.76 5.88 -19.83 -0.12 -1.88 16 7 C -0.11 -2.30 10.00 71.24 0.71 -1.58 16 8 C -0.17 -5.14 9.68 22.25 0.22 -4.93 16 9 C -0.08 -2.83 9.73 22.49 0.22 -2.61 16 10 C -0.09 -3.95 4.33 -19.97 -0.09 -4.04 16 11 C 0.00 0.07 4.95 -19.94 -0.10 -0.02 16 12 C -0.18 -6.73 9.73 22.52 0.22 -6.51 16 13 C -0.10 -3.59 10.00 22.24 0.22 -3.37 16 14 C -0.16 -5.97 10.06 22.44 0.23 -5.75 16 15 C 0.07 3.24 7.23 38.85 0.28 3.52 16 16 N -0.59 -27.22 5.99 -184.95 -1.11 -28.33 16 17 H 0.41 15.40 8.96 -92.71 -0.83 14.56 16 18 C -0.12 -6.42 10.89 84.29 0.92 -5.50 16 19 C -0.01 -0.30 6.10 -20.00 -0.12 -0.42 16 20 C -0.41 -23.48 8.29 23.29 0.19 -23.29 16 21 H 0.07 3.90 4.71 -2.91 -0.01 3.88 16 22 C 0.01 0.54 5.49 85.15 0.47 1.01 16 23 N -0.86 -47.45 10.33 21.79 0.23 -47.22 16 24 Si 0.96 42.19 29.56 68.60 2.03 44.22 16 25 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 26 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 27 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 28 C -0.14 -7.07 5.88 -19.87 -0.12 -7.18 16 29 H 0.04 1.47 8.14 -2.39 -0.02 1.46 16 30 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.08 2.15 7.67 -2.38 -0.02 2.14 16 33 H 0.05 1.72 7.66 -2.39 -0.02 1.70 16 34 H 0.14 4.16 6.30 -2.91 -0.02 4.14 16 35 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.08 1.47 8.08 -2.39 -0.02 1.45 16 37 H 0.07 1.37 8.08 -2.39 -0.02 1.36 16 38 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 39 H 0.13 4.37 8.06 -2.91 -0.02 4.35 16 40 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 41 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 42 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 43 H 0.18 9.89 5.68 -2.91 -0.02 9.87 16 44 H 0.27 13.95 8.30 -92.71 -0.77 13.18 16 Total: -1.00 -69.40 361.34 5.09 -64.31 By element: Atomic # 1 Polarization: 46.86 SS G_CDS: 0.20 Total: 47.06 kcal Atomic # 6 Polarization: -70.01 SS G_CDS: 4.56 Total: -65.45 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -0.88 Total: -75.55 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.81 Total: -14.60 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -69.40 5.09 -64.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243407636.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.603 kcal (2) G-P(sol) polarization free energy of solvation -69.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds