Wall clock time and date at job start Tue Mar 31 2020 13:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.39769 * 119.75019 * 2 1 4 4 C 1.39002 * 120.05261 * 18.55156 * 3 2 1 5 5 C 1.37842 * 120.05818 * 179.70266 * 4 3 2 6 6 C 1.39418 * 119.96223 * 0.57331 * 5 4 3 7 7 C 1.48345 * 120.05224 * 179.73386 * 6 5 4 8 8 C 1.39362 * 120.12309 * 179.68156 * 7 6 5 9 9 C 1.38014 * 119.87781 * 180.02562 * 8 7 6 10 10 C 1.38325 * 120.12080 * 359.97438 * 9 8 7 11 11 C 1.50699 * 119.87101 * 180.02562 * 10 9 8 12 12 C 1.50693 * 109.47462 * 89.99948 * 11 10 9 13 13 H 1.08001 * 119.99978 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00534 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99314 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00430 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47282 * 59.99419 * 16 14 12 18 18 H 1.48493 * 109.47278 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46797 * 299.99822 * 16 14 12 20 20 C 1.38325 * 120.25126 * 0.02562 * 10 9 8 21 21 C 1.38019 * 120.12129 * 359.97438 * 20 10 9 22 22 C 1.39379 * 119.88882 * 359.45623 * 6 5 4 23 23 C 1.37856 * 119.94182 * 0.25426 * 22 6 5 24 24 C 1.50686 * 120.08556 * 179.97438 * 23 22 6 25 25 C 1.52912 * 109.51398 * 146.03471 * 24 23 22 26 26 C 1.34538 * 119.75549 * 180.02562 * 2 1 3 27 27 O 1.21285 * 119.61046 * 0.74690 * 26 2 1 28 28 H 1.09001 * 109.46795 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46962 * 299.97427 * 1 2 3 30 30 H 1.09004 * 109.47356 * 59.97896 * 1 2 3 31 31 H 1.07995 * 119.96871 * 0.02562 * 4 3 2 32 32 H 1.07999 * 120.01860 * 180.27394 * 5 4 3 33 33 H 1.08003 * 120.06069 * 0.04165 * 8 7 6 34 34 H 1.08004 * 119.93482 * 180.27425 * 9 8 7 35 35 H 1.09002 * 109.46594 * 210.00101 * 11 10 9 36 36 H 1.09001 * 109.47643 * 329.99271 * 11 10 9 37 37 H 0.97004 * 119.99243 * 179.97438 * 15 14 12 38 38 H 1.07995 * 119.93935 * 179.97438 * 20 10 9 39 39 H 1.07996 * 120.06000 * 179.97438 * 21 20 10 40 40 H 1.08004 * 120.02971 * 180.22726 * 22 6 5 41 41 H 1.08997 * 109.46729 * 266.04604 * 24 23 22 42 42 H 1.09003 * 109.46324 * 26.03271 * 24 23 22 43 43 H 1.08999 * 109.40271 * 168.74365 * 25 24 23 44 44 H 1.09003 * 109.39892 * 288.48256 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1586 1.2135 0.0000 4 6 1.5137 2.3838 0.3828 5 6 2.1993 3.5797 0.3887 6 6 3.5374 3.6171 -0.0011 7 6 4.2754 4.9039 -0.0011 8 6 5.6149 4.9419 -0.3841 9 6 6.2968 6.1418 -0.3817 10 6 5.6531 7.3053 -0.0007 11 6 6.4030 8.6125 -0.0008 12 6 6.2614 9.2728 -1.3479 13 1 5.6863 8.7936 -2.1264 14 6 6.8661 10.4887 -1.5867 15 7 7.5660 11.0724 -0.6385 16 14 6.6900 11.3076 -3.2564 17 1 5.2534 11.5604 -3.5347 18 1 7.4290 12.5955 -3.2565 19 1 7.2481 10.4171 -4.3056 20 6 4.3238 7.2735 0.3804 21 6 3.6320 6.0792 0.3818 22 6 4.1820 2.4425 -0.3851 23 6 3.4940 1.2479 -0.3837 24 6 4.1876 -0.0238 -0.7989 25 6 3.6374 -1.1950 0.0157 26 6 2.1328 -1.1680 -0.0005 27 8 1.5148 -2.2115 -0.0147 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5134 0.8902 30 1 -0.3634 0.5142 -0.8898 31 1 0.4761 2.3553 0.6808 32 1 1.6989 4.4879 0.6905 33 1 6.1182 4.0341 -0.6824 34 1 7.3336 6.1730 -0.6826 35 1 5.9933 9.2663 0.7693 36 1 7.4574 8.4266 0.2038 37 1 7.9917 11.9277 -0.8067 38 1 3.8263 8.1849 0.6774 39 1 2.5943 6.0555 0.6800 40 1 5.2196 2.4683 -0.6840 41 1 4.0111 -0.2043 -1.8592 42 1 5.2586 0.0716 -0.6200 43 1 3.9874 -2.1326 -0.4162 44 1 3.9898 -1.1179 1.0443 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244009120.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:55 Heat of formation + Delta-G solvation = 2.095784 kcal Electronic energy + Delta-G solvation = -25093.711365 eV Core-core repulsion = 21553.735393 eV Total energy + Delta-G solvation = -3539.975972 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.38696 -39.44558 -38.26600 -35.89586 -34.87323 -33.50443 -31.86984 -30.91341 -29.99747 -29.36294 -27.86018 -26.57131 -24.72765 -23.84453 -22.68083 -22.22810 -21.21107 -20.36014 -18.93755 -17.96485 -17.12377 -16.66174 -16.38230 -16.06211 -15.40326 -14.98792 -14.78040 -14.49633 -14.28409 -14.15021 -13.88687 -13.80010 -13.52465 -13.25158 -12.97541 -12.77936 -12.68586 -12.52835 -12.41286 -12.03896 -11.85659 -11.59108 -11.38116 -11.18075 -11.11644 -10.70503 -10.58117 -10.49405 -10.27723 -10.16267 -9.61858 -9.51031 -9.03561 -8.52514 -8.47230 -8.39740 -7.32113 -6.08863 -4.13400 0.72562 1.16281 1.94828 1.97687 2.42924 2.46860 3.28768 3.33176 3.36136 3.63327 4.00445 4.31556 4.35669 4.38830 4.54142 4.60449 4.76366 4.78261 4.90057 4.96976 5.03360 5.14677 5.18370 5.25176 5.33052 5.35858 5.38630 5.44176 5.46604 5.60605 5.79767 5.81367 5.91125 5.99345 6.06751 6.15706 6.29728 6.43377 6.53987 6.57035 6.71072 6.99856 7.03828 7.09924 7.10409 7.43685 7.60286 7.62528 7.77297 7.86368 8.25595 8.91587 9.50664 11.00646 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.029005 B = 0.002207 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.109834 B =12683.029595 C =12938.827723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.553 5.553 3 C 0.143 3.857 4 C -0.143 4.143 5 C -0.090 4.090 6 C -0.034 4.034 7 C -0.088 4.088 8 C -0.107 4.107 9 C -0.124 4.124 10 C -0.023 4.023 11 C 0.045 3.955 12 C -0.513 4.513 13 H 0.057 0.943 14 C 0.059 3.941 15 N -0.894 5.894 16 Si 0.896 3.104 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.276 1.276 20 C -0.125 4.125 21 C -0.107 4.107 22 C -0.084 4.084 23 C -0.118 4.118 24 C -0.077 4.077 25 C -0.137 4.137 26 C 0.518 3.482 27 O -0.534 6.534 28 H 0.093 0.907 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.128 0.872 32 H 0.132 0.868 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.030 0.970 36 H 0.030 0.970 37 H 0.263 0.737 38 H 0.120 0.880 39 H 0.115 0.885 40 H 0.133 0.867 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.108 0.892 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.062 -21.193 2.593 23.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.276 5.276 3 C 0.049 3.951 4 C -0.163 4.163 5 C -0.109 4.109 6 C -0.035 4.035 7 C -0.088 4.088 8 C -0.125 4.125 9 C -0.143 4.143 10 C -0.023 4.023 11 C 0.008 3.992 12 C -0.551 4.551 13 H 0.075 0.925 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.724 3.276 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.143 4.143 21 C -0.125 4.125 22 C -0.102 4.102 23 C -0.120 4.120 24 C -0.114 4.114 25 C -0.176 4.176 26 C 0.309 3.691 27 O -0.411 6.411 28 H 0.112 0.888 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.145 0.855 32 H 0.149 0.851 33 H 0.132 0.868 34 H 0.139 0.861 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.073 0.927 38 H 0.138 0.862 39 H 0.133 0.867 40 H 0.151 0.849 41 H 0.100 0.900 42 H 0.111 0.889 43 H 0.126 0.874 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.336 -21.693 2.626 24.173 hybrid contribution -0.157 0.734 -0.909 1.179 sum -10.494 -20.959 1.717 23.502 Atomic orbital electron populations 1.21877 0.78152 1.04818 1.02371 1.45290 1.07536 1.04826 1.69974 1.17631 0.91542 0.85300 1.00612 1.20694 1.00514 0.91265 1.03856 1.21087 0.93687 0.97406 0.98700 1.18833 0.93249 0.92651 0.98752 1.18453 0.93915 0.91565 1.04878 1.21084 0.93500 0.97785 1.00115 1.21046 1.00334 0.91898 1.00971 1.20822 0.93887 0.96966 0.90634 1.18401 0.95099 0.87787 0.97883 1.20995 1.32436 1.04309 0.97392 0.92499 1.25014 0.95105 0.97116 0.97075 1.69948 1.33384 1.17167 1.32725 0.86584 0.78322 0.78620 0.84098 1.20141 1.21205 1.20143 1.21047 0.94694 0.97178 1.01336 1.21087 0.99047 0.92183 1.00164 1.20928 0.99974 0.90389 0.98947 1.19396 0.92705 0.95858 1.04053 1.20428 1.00630 0.90179 1.00131 1.21694 0.90691 1.01384 1.03847 1.20789 0.91015 0.82537 0.74788 1.90715 1.70081 1.31425 1.48837 0.88815 0.91325 0.91243 0.85464 0.85059 0.86751 0.86146 0.95214 0.95208 0.92729 0.86157 0.86743 0.84948 0.89963 0.88906 0.87386 0.87862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.55 9.66 59.85 0.58 1.13 16 2 N -0.55 -5.53 3.09 -120.94 -0.37 -5.90 16 3 C 0.14 1.47 6.33 -83.68 -0.53 0.94 16 4 C -0.14 -1.40 9.32 -39.44 -0.37 -1.77 16 5 C -0.09 -0.99 9.42 -39.29 -0.37 -1.36 16 6 C -0.03 -0.42 5.88 -104.87 -0.62 -1.04 16 7 C -0.09 -1.31 5.88 -104.90 -0.62 -1.93 16 8 C -0.11 -1.65 9.43 -39.25 -0.37 -2.02 16 9 C -0.12 -2.28 9.68 -39.63 -0.38 -2.67 16 10 C -0.02 -0.48 5.07 -104.56 -0.53 -1.01 16 11 C 0.05 1.12 5.10 -29.04 -0.15 0.97 16 12 C -0.51 -14.00 9.09 -34.44 -0.31 -14.32 16 13 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 16 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 C -0.12 -2.29 9.68 -39.63 -0.38 -2.68 16 21 C -0.11 -1.66 9.43 -39.25 -0.37 -2.03 16 22 C -0.08 -0.91 9.06 -39.30 -0.36 -1.27 16 23 C -0.12 -1.16 5.65 -104.49 -0.59 -1.75 16 24 C -0.08 -0.56 6.00 -27.93 -0.17 -0.73 16 25 C -0.14 -1.03 6.08 -28.03 -0.17 -1.20 16 26 C 0.52 5.58 7.46 -11.19 -0.08 5.49 16 27 O -0.53 -7.30 16.35 5.55 0.09 -7.21 16 28 H 0.09 0.80 6.85 -51.93 -0.36 0.44 16 29 H 0.07 0.43 7.29 -51.93 -0.38 0.05 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.13 0.97 6.63 -52.49 -0.35 0.62 16 32 H 0.13 1.27 6.20 -52.49 -0.33 0.95 16 33 H 0.11 1.42 6.20 -52.48 -0.33 1.10 16 34 H 0.12 2.14 8.06 -52.48 -0.42 1.72 16 35 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 36 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 39 H 0.11 1.45 6.20 -52.49 -0.33 1.12 16 40 H 0.13 1.25 6.20 -52.48 -0.33 0.93 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.09 0.52 8.06 -51.93 -0.42 0.10 16 43 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 361.76 15.07 5.45 5.45 Total: -1.00 -31.78 361.76 -10.72 -42.50 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -5.72 Total: -0.11 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -5.89 Total: -25.72 kcal Atomic # 7 Polarization: -31.41 SS G_CDS: 0.36 Total: -31.04 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: 0.09 Total: -7.21 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.78 -10.72 -42.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244009120.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.595 kcal (2) G-P(sol) polarization free energy of solvation -31.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds