Wall clock time and date at job start Tue Mar 31 2020 13:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.39769 * 119.75019 * 2 1 4 4 C 1.39002 * 120.05261 * 18.55156 * 3 2 1 5 5 C 1.37842 * 120.05818 * 179.70266 * 4 3 2 6 6 C 1.39418 * 119.96223 * 0.57331 * 5 4 3 7 7 C 1.48345 * 120.05224 * 179.73386 * 6 5 4 8 8 C 1.39362 * 120.12309 * 179.68156 * 7 6 5 9 9 C 1.38014 * 119.87781 * 180.02562 * 8 7 6 10 10 C 1.38325 * 120.12080 * 359.97438 * 9 8 7 11 11 C 1.50699 * 119.87101 * 180.02562 * 10 9 8 12 12 C 1.50693 * 109.47462 * 89.99948 * 11 10 9 13 13 H 1.08001 * 119.99978 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00534 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99314 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00430 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47282 * 59.99419 * 16 14 12 18 18 H 1.48493 * 109.47278 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46797 * 299.99822 * 16 14 12 20 20 C 1.38325 * 120.25126 * 0.02562 * 10 9 8 21 21 C 1.38019 * 120.12129 * 359.97438 * 20 10 9 22 22 C 1.39379 * 119.88882 * 359.45623 * 6 5 4 23 23 C 1.37856 * 119.94182 * 0.25426 * 22 6 5 24 24 C 1.50686 * 120.08556 * 179.97438 * 23 22 6 25 25 C 1.52912 * 109.51398 * 146.03471 * 24 23 22 26 26 C 1.34538 * 119.75549 * 180.02562 * 2 1 3 27 27 O 1.21285 * 119.61046 * 0.74690 * 26 2 1 28 28 H 1.09001 * 109.46795 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46962 * 299.97427 * 1 2 3 30 30 H 1.09004 * 109.47356 * 59.97896 * 1 2 3 31 31 H 1.07995 * 119.96871 * 0.02562 * 4 3 2 32 32 H 1.07999 * 120.01860 * 180.27394 * 5 4 3 33 33 H 1.08003 * 120.06069 * 0.04165 * 8 7 6 34 34 H 1.08004 * 119.93482 * 180.27425 * 9 8 7 35 35 H 1.09002 * 109.46594 * 210.00101 * 11 10 9 36 36 H 1.09001 * 109.47643 * 329.99271 * 11 10 9 37 37 H 0.97004 * 119.99243 * 179.97438 * 15 14 12 38 38 H 1.07995 * 119.93935 * 179.97438 * 20 10 9 39 39 H 1.07996 * 120.06000 * 179.97438 * 21 20 10 40 40 H 1.08004 * 120.02971 * 180.22726 * 22 6 5 41 41 H 1.08997 * 109.46729 * 266.04604 * 24 23 22 42 42 H 1.09003 * 109.46324 * 26.03271 * 24 23 22 43 43 H 1.08999 * 109.40271 * 168.74365 * 25 24 23 44 44 H 1.09003 * 109.39892 * 288.48256 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1586 1.2135 0.0000 4 6 1.5137 2.3838 0.3828 5 6 2.1993 3.5797 0.3887 6 6 3.5374 3.6171 -0.0011 7 6 4.2754 4.9039 -0.0011 8 6 5.6149 4.9419 -0.3841 9 6 6.2968 6.1418 -0.3817 10 6 5.6531 7.3053 -0.0007 11 6 6.4030 8.6125 -0.0008 12 6 6.2614 9.2728 -1.3479 13 1 5.6863 8.7936 -2.1264 14 6 6.8661 10.4887 -1.5867 15 7 7.5660 11.0724 -0.6385 16 14 6.6900 11.3076 -3.2564 17 1 5.2534 11.5604 -3.5347 18 1 7.4290 12.5955 -3.2565 19 1 7.2481 10.4171 -4.3056 20 6 4.3238 7.2735 0.3804 21 6 3.6320 6.0792 0.3818 22 6 4.1820 2.4425 -0.3851 23 6 3.4940 1.2479 -0.3837 24 6 4.1876 -0.0238 -0.7989 25 6 3.6374 -1.1950 0.0157 26 6 2.1328 -1.1680 -0.0005 27 8 1.5148 -2.2115 -0.0147 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5134 0.8902 30 1 -0.3634 0.5142 -0.8898 31 1 0.4761 2.3553 0.6808 32 1 1.6989 4.4879 0.6905 33 1 6.1182 4.0341 -0.6824 34 1 7.3336 6.1730 -0.6826 35 1 5.9933 9.2663 0.7693 36 1 7.4574 8.4266 0.2038 37 1 7.9917 11.9277 -0.8067 38 1 3.8263 8.1849 0.6774 39 1 2.5943 6.0555 0.6800 40 1 5.2196 2.4683 -0.6840 41 1 4.0111 -0.2043 -1.8592 42 1 5.2586 0.0716 -0.6200 43 1 3.9874 -2.1326 -0.4162 44 1 3.9898 -1.1179 1.0443 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244009120.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:54 Heat of formation + Delta-G solvation = -12.974384 kcal Electronic energy + Delta-G solvation = -25094.364856 eV Core-core repulsion = 21553.735393 eV Total energy + Delta-G solvation = -3540.629463 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.15423 -40.51534 -39.35521 -36.83492 -35.62162 -35.24894 -33.35676 -32.03103 -31.02521 -30.58447 -28.62409 -28.00766 -25.45538 -25.40970 -23.71390 -23.44396 -22.20945 -21.65530 -19.79820 -18.74338 -18.49958 -17.92665 -17.50544 -17.09700 -16.61747 -16.19663 -16.09653 -15.46372 -15.18334 -15.11086 -14.84730 -14.66986 -14.60631 -14.47455 -14.26831 -13.92801 -13.58462 -13.48214 -13.36847 -13.23882 -13.10399 -13.00566 -12.59496 -12.50407 -12.45807 -12.21553 -11.99142 -11.67958 -11.46810 -11.36588 -11.23551 -11.00883 -10.59933 -9.82800 -9.71807 -9.63120 -8.46429 -8.16284 -6.33345 -0.23928 0.40067 0.64615 0.86953 1.40047 1.42472 1.50358 1.53206 1.75717 2.39690 2.72267 3.10658 3.23500 3.31865 3.62975 3.70564 3.79459 4.01444 4.10021 4.12678 4.22953 4.24430 4.33848 4.37267 4.45426 4.48213 4.54133 4.71217 4.73086 4.80321 4.81263 4.88060 4.92862 5.05937 5.10910 5.13291 5.18717 5.32132 5.39370 5.40015 5.46123 5.55531 5.65509 5.75988 5.86952 5.87980 6.11302 6.12812 6.23293 6.28659 6.79332 6.83251 7.35157 8.88974 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.029005 B = 0.002207 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.109834 B =12683.029595 C =12938.827723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.555 5.555 3 C 0.141 3.859 4 C -0.143 4.143 5 C -0.090 4.090 6 C -0.060 4.060 7 C -0.071 4.071 8 C -0.104 4.104 9 C -0.135 4.135 10 C -0.062 4.062 11 C 0.054 3.946 12 C -0.528 4.528 13 H 0.054 0.946 14 C 0.004 3.996 15 N -0.930 5.930 16 Si 0.965 3.035 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.267 1.267 20 C -0.136 4.136 21 C -0.105 4.105 22 C -0.081 4.081 23 C -0.121 4.121 24 C -0.074 4.074 25 C -0.133 4.133 26 C 0.510 3.490 27 O -0.571 6.571 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.149 0.851 34 H 0.115 0.885 35 H 0.002 0.998 36 H 0.003 0.997 37 H 0.265 0.735 38 H 0.114 0.886 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.087 0.913 42 H 0.116 0.884 43 H 0.122 0.878 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.284 -23.347 1.629 25.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.278 5.278 3 C 0.047 3.953 4 C -0.163 4.163 5 C -0.109 4.109 6 C -0.061 4.061 7 C -0.071 4.071 8 C -0.121 4.121 9 C -0.153 4.153 10 C -0.062 4.062 11 C 0.018 3.982 12 C -0.566 4.566 13 H 0.072 0.928 14 C -0.194 4.194 15 N -0.570 5.570 16 Si 0.789 3.211 17 H -0.193 1.193 18 H -0.206 1.206 19 H -0.192 1.192 20 C -0.154 4.154 21 C -0.123 4.123 22 C -0.099 4.099 23 C -0.123 4.123 24 C -0.111 4.111 25 C -0.172 4.172 26 C 0.302 3.698 27 O -0.450 6.450 28 H 0.101 0.899 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.167 0.833 32 H 0.160 0.840 33 H 0.166 0.834 34 H 0.133 0.867 35 H 0.021 0.979 36 H 0.022 0.978 37 H 0.074 0.926 38 H 0.132 0.868 39 H 0.164 0.836 40 H 0.165 0.835 41 H 0.105 0.895 42 H 0.134 0.866 43 H 0.140 0.860 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.566 -23.844 1.663 26.553 hybrid contribution 0.100 1.210 -0.553 1.334 sum -11.466 -22.634 1.110 25.397 Atomic orbital electron populations 1.22028 0.77240 1.04641 1.03853 1.45437 1.08362 1.04681 1.69301 1.17869 0.91925 0.85458 1.00088 1.20905 1.01520 0.90606 1.03245 1.21248 0.93209 0.98334 0.98076 1.18778 0.94012 0.91878 1.01416 1.18770 0.93714 0.92569 1.02080 1.21364 0.93848 0.97684 0.99254 1.21061 1.00395 0.92413 1.01429 1.20489 0.95042 0.95750 0.94964 1.18124 0.93995 0.89918 0.96209 1.21336 1.32148 1.04752 0.98333 0.92769 1.25932 0.94679 0.97802 1.01034 1.70077 1.34364 1.17639 1.34897 0.85506 0.78633 0.77638 0.79342 1.19288 1.20604 1.19239 1.21051 0.94015 0.98440 1.01884 1.21352 1.00358 0.91155 0.99447 1.21086 1.00653 0.90057 0.98142 1.19653 0.92673 0.96584 1.03427 1.20498 1.01707 0.88639 1.00208 1.21752 0.88334 1.02273 1.04825 1.21419 0.92344 0.82135 0.73903 1.90700 1.71076 1.32595 1.50630 0.89864 0.89511 0.90080 0.83331 0.83951 0.83363 0.86650 0.97926 0.97843 0.92572 0.86790 0.83618 0.83541 0.89498 0.86562 0.86026 0.86666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.86 9.66 127.77 1.23 2.09 16 2 N -0.56 -9.70 3.09 -655.07 -2.02 -11.72 16 3 C 0.14 2.43 6.33 38.24 0.24 2.67 16 4 C -0.14 -2.29 9.32 22.36 0.21 -2.08 16 5 C -0.09 -1.67 9.42 22.46 0.21 -1.46 16 6 C -0.06 -1.31 5.88 -20.03 -0.12 -1.42 16 7 C -0.07 -1.97 5.88 -20.05 -0.12 -2.08 16 8 C -0.10 -3.03 9.43 22.49 0.21 -2.81 16 9 C -0.13 -5.03 9.68 22.24 0.22 -4.81 16 10 C -0.06 -2.70 5.07 -19.82 -0.10 -2.80 16 11 C 0.05 2.90 5.10 29.10 0.15 3.04 16 12 C -0.53 -29.95 9.09 25.60 0.23 -29.71 16 13 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 14 C 0.00 0.21 5.46 84.65 0.46 0.67 16 15 N -0.93 -55.78 13.29 21.45 0.28 -55.49 16 16 Si 0.96 43.92 29.54 68.60 2.03 45.95 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 20 C -0.14 -5.11 9.68 22.24 0.22 -4.89 16 21 C -0.11 -3.12 9.43 22.49 0.21 -2.91 16 22 C -0.08 -1.47 9.06 22.45 0.20 -1.26 16 23 C -0.12 -1.96 5.65 -19.78 -0.11 -2.07 16 24 C -0.07 -0.81 6.00 29.81 0.18 -0.63 16 25 C -0.13 -1.61 6.08 29.75 0.18 -1.43 16 26 C 0.51 9.93 7.46 87.63 0.65 10.58 16 27 O -0.57 -14.99 16.35 -3.05 -0.05 -15.04 16 28 H 0.08 1.33 6.85 -2.39 -0.02 1.31 16 29 H 0.09 0.84 7.29 -2.39 -0.02 0.82 16 30 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.15 1.69 6.63 -2.91 -0.02 1.67 16 32 H 0.14 2.25 6.20 -2.91 -0.02 2.23 16 33 H 0.15 3.22 6.20 -2.91 -0.02 3.20 16 34 H 0.12 4.26 8.06 -2.91 -0.02 4.24 16 35 H 0.00 0.14 8.08 -2.39 -0.02 0.12 16 36 H 0.00 0.18 8.08 -2.39 -0.02 0.17 16 37 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 38 H 0.11 4.27 8.06 -2.91 -0.02 4.25 16 39 H 0.15 3.30 6.20 -2.91 -0.02 3.28 16 40 H 0.15 2.15 6.20 -2.91 -0.02 2.13 16 41 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.12 0.78 8.06 -2.39 -0.02 0.76 16 43 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -71.64 361.76 5.62 -66.02 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 1.02 Total: 11.59 kcal Atomic # 6 Polarization: -45.67 SS G_CDS: 4.36 Total: -41.31 kcal Atomic # 7 Polarization: -65.48 SS G_CDS: -1.74 Total: -67.22 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.05 Total: -15.04 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -71.64 5.62 -66.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244009120.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.047 kcal (2) G-P(sol) polarization free energy of solvation -71.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds