Wall clock time and date at job start Tue Mar 31 2020 12:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42896 * 109.46884 * 2 1 4 4 C 1.35809 * 116.99705 * 180.02562 * 3 2 1 5 5 C 1.38978 * 119.91725 * 359.97438 * 4 3 2 6 6 C 1.37745 * 120.08712 * 180.02562 * 5 4 3 7 7 C 1.39698 * 119.91796 * 359.97438 * 6 5 4 8 8 C 1.47920 * 120.08958 * 179.97438 * 7 6 5 9 9 C 1.40029 * 119.50379 * 130.21377 * 8 7 6 10 10 C 1.35975 * 121.18854 * 180.25906 * 9 8 7 11 11 C 1.41066 * 120.11043 * 359.79042 * 10 9 8 12 12 C 1.40411 * 120.48014 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99730 * 154.64563 * 12 11 10 14 14 C 1.40272 * 120.00419 * 334.64370 * 12 11 10 15 15 N 1.30651 * 119.99627 * 342.93892 * 14 12 11 16 16 Si 1.86800 * 120.00335 * 162.93985 * 14 12 11 17 17 H 1.48498 * 109.46846 * 59.99957 * 16 14 12 18 18 H 1.48499 * 109.47181 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47244 * 300.00360 * 16 14 12 20 20 C 1.46657 * 119.03172 * 359.97438 * 11 10 9 21 21 C 1.43198 * 120.56047 * 180.02562 * 20 11 10 22 22 N 9.61520 * 137.24327 * 336.27029 * 3 1 2 23 23 C 1.39058 * 118.87009 * 0.02562 * 20 11 10 24 24 C 1.39667 * 119.82595 * 0.25850 * 7 6 5 25 25 C 1.50694 * 120.04402 * 179.72542 * 24 7 6 26 26 C 1.37793 * 119.91137 * 359.46303 * 24 7 6 27 27 C 1.50697 * 119.96019 * 180.27784 * 26 24 7 28 28 H 1.08994 * 109.47272 * 300.00061 * 1 2 3 29 29 H 1.08994 * 109.47062 * 60.00685 * 1 2 3 30 30 H 1.09006 * 109.46913 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47213 * 239.99251 * 2 1 3 32 32 H 1.09002 * 109.46771 * 119.99482 * 2 1 3 33 33 H 1.08007 * 119.95477 * 359.97438 * 5 4 3 34 34 H 1.08005 * 120.04497 * 179.97438 * 6 5 4 35 35 H 1.08001 * 119.40489 * 0.02562 * 9 8 7 36 36 H 1.08003 * 119.94331 * 179.76666 * 10 9 8 37 37 H 0.97003 * 119.99596 * 179.97438 * 15 14 12 38 38 H 1.08006 * 120.09261 * 179.97438 * 23 20 11 39 39 H 1.08997 * 109.47364 * 89.99685 * 25 24 7 40 40 H 1.09004 * 109.47253 * 209.99776 * 25 24 7 41 41 H 1.09003 * 109.46772 * 329.99394 * 25 24 7 42 42 H 1.08996 * 109.47171 * 270.28387 * 27 26 24 43 43 H 1.09006 * 109.47010 * 30.28032 * 27 26 24 44 44 H 1.08997 * 109.47428 * 150.27749 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3527 1.5252 -0.0005 5 6 4.1977 0.4218 -0.0005 6 6 5.5638 0.5982 -0.0005 7 6 6.0998 1.8883 -0.0011 8 6 7.5662 2.0821 -0.0006 9 6 8.1472 2.9520 -0.9315 10 6 9.4918 3.1517 -0.9649 11 6 10.3298 2.4814 -0.0493 12 6 11.7193 2.6814 -0.0772 13 1 12.3054 2.5255 0.8165 14 6 12.3463 3.0838 -1.2657 15 7 11.7254 2.9543 -2.4080 16 14 14.0688 3.8046 -1.2154 17 1 15.0053 2.8089 -0.6351 18 1 14.5027 4.1468 -2.5938 19 1 14.0682 5.0305 -0.3774 20 6 9.7285 1.5726 0.9322 21 6 10.5482 0.8758 1.8772 22 7 11.1987 0.3219 2.6269 23 6 8.3488 1.3991 0.9295 24 6 5.2473 2.9946 0.0038 25 6 5.8202 4.3884 0.0095 26 6 3.8818 2.8100 -0.0020 27 6 2.9611 4.0030 -0.0031 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 3.7827 -0.5753 0.0003 34 1 6.2199 -0.2598 -0.0001 35 1 7.5163 3.4707 -1.6381 36 1 9.9189 3.8243 -1.6940 37 1 12.1588 3.2329 -3.2299 38 1 7.8851 0.7342 1.6433 39 1 5.9580 4.7288 -1.0168 40 1 5.1352 5.0607 0.5263 41 1 6.7816 4.3840 0.5231 42 1 2.7391 4.2915 1.0243 43 1 3.4437 4.8340 -0.5175 44 1 2.0346 3.7465 -0.5168 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244058269.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:48 Heat of formation + Delta-G solvation = 7.502157 kcal Electronic energy + Delta-G solvation = -25528.238594 eV Core-core repulsion = 21988.497060 eV Total energy + Delta-G solvation = -3539.741534 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.12597 -38.34332 -37.10742 -35.11366 -34.29067 -33.11086 -32.28380 -31.01348 -29.92732 -29.19875 -27.30822 -26.10728 -25.22855 -23.54732 -22.29131 -21.91532 -20.23386 -20.03668 -17.76435 -17.55472 -17.01217 -16.11951 -16.05948 -15.53515 -14.84362 -14.18737 -14.13524 -14.05305 -13.76134 -13.34525 -12.96338 -12.89400 -12.81671 -12.76786 -12.66633 -12.49465 -12.40077 -12.02930 -11.93584 -11.75771 -11.70389 -11.58696 -11.43659 -11.39374 -11.25489 -11.08676 -10.79962 -10.66674 -10.39791 -10.34747 -9.89887 -9.79574 -9.50481 -8.28197 -8.04482 -7.74375 -7.31722 -7.12577 -4.74670 1.65698 1.69108 2.20074 2.65021 2.87548 2.90514 3.02474 3.29574 3.64055 3.89403 3.99367 4.23560 4.41617 4.77967 4.83350 5.02610 5.11205 5.15054 5.30093 5.32701 5.40580 5.47488 5.51520 5.60791 5.62799 5.73162 5.82171 5.84542 5.91820 5.99122 6.00871 6.07850 6.20970 6.27196 6.33826 6.60650 6.62564 6.67661 6.74079 6.85392 6.93689 7.10036 7.12178 7.22441 7.50225 7.62793 7.69507 7.80157 7.84696 8.18419 8.36683 8.52575 8.80880 9.67174 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020578 B = 0.002887 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.328796 B = 9696.535635 C =10409.706336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.318 6.318 4 C 0.105 3.895 5 C -0.207 4.207 6 C -0.089 4.089 7 C -0.023 4.023 8 C -0.194 4.194 9 C -0.053 4.053 10 C -0.167 4.167 11 C 0.156 3.844 12 C -0.423 4.423 13 H 0.086 0.914 14 C 0.076 3.924 15 N -0.757 5.757 16 Si 0.916 3.084 17 H -0.260 1.260 18 H -0.272 1.272 19 H -0.257 1.257 20 C -0.190 4.190 21 C 0.300 3.700 22 N -0.511 5.511 23 C -0.005 4.005 24 C -0.053 4.053 25 C -0.113 4.113 26 C -0.117 4.117 27 C -0.101 4.101 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.096 0.904 36 H 0.125 0.875 37 H 0.292 0.708 38 H 0.098 0.902 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.598 1.248 -1.565 15.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.233 6.233 4 C 0.060 3.940 5 C -0.225 4.225 6 C -0.107 4.107 7 C -0.024 4.024 8 C -0.196 4.196 9 C -0.073 4.073 10 C -0.186 4.186 11 C 0.150 3.850 12 C -0.450 4.450 13 H 0.104 0.896 14 C -0.148 4.148 15 N -0.378 5.378 16 Si 0.739 3.261 17 H -0.184 1.184 18 H -0.197 1.197 19 H -0.181 1.181 20 C -0.196 4.196 21 C -0.009 4.009 22 N -0.190 5.190 23 C -0.026 4.026 24 C -0.053 4.053 25 C -0.169 4.169 26 C -0.118 4.118 27 C -0.157 4.157 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.114 0.886 36 H 0.143 0.857 37 H 0.104 0.896 38 H 0.116 0.884 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.718 0.557 -0.679 14.744 hybrid contribution 0.588 -0.027 -0.460 0.747 sum -14.130 0.530 -1.140 14.186 Atomic orbital electron populations 1.21759 0.93175 1.02534 1.03295 1.22682 0.95400 0.82709 1.01210 1.85973 1.19585 1.28395 1.89305 1.18717 0.81668 0.93574 0.99993 1.21023 0.94386 0.97246 1.09881 1.21084 0.93685 0.97017 0.98922 1.18729 0.92970 0.91496 0.99176 1.17672 0.89654 1.08598 1.03672 1.20496 0.94859 0.95959 0.95947 1.20901 0.91812 1.03353 1.02525 1.18469 0.92739 0.85899 0.87884 1.19763 0.93004 1.35511 0.96717 0.89560 1.26147 1.01314 0.92808 0.94574 1.69714 1.38806 1.29975 0.99311 0.86194 0.80459 0.80670 0.78807 1.18446 1.19702 1.18107 1.16769 0.90569 1.08137 1.04160 1.25813 0.91975 0.91570 0.91571 1.81047 1.10172 1.13842 1.13924 1.20525 0.91214 0.95359 0.95506 1.19681 0.90993 0.95826 0.98769 1.20887 1.01731 0.92148 1.02155 1.18913 0.93511 0.92154 1.07229 1.20571 0.98210 0.95241 1.01714 0.91690 0.91683 0.90682 0.92342 0.92356 0.86328 0.86021 0.88621 0.85730 0.89631 0.88363 0.91329 0.92253 0.90035 0.91963 0.91680 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.16 0.38 -0.73 16 2 C 0.06 0.55 5.46 37.16 0.20 0.75 16 3 O -0.32 -4.22 9.16 -19.14 -0.18 -4.40 16 4 C 0.10 1.56 6.67 -39.04 -0.26 1.30 16 5 C -0.21 -3.02 9.02 -39.49 -0.36 -3.37 16 6 C -0.09 -1.44 9.47 -39.22 -0.37 -1.81 16 7 C -0.02 -0.41 5.45 -104.85 -0.57 -0.98 16 8 C -0.19 -3.77 4.74 -104.82 -0.50 -4.27 16 9 C -0.05 -1.06 7.74 -39.72 -0.31 -1.37 16 10 C -0.17 -3.68 8.62 -39.32 -0.34 -4.02 16 11 C 0.16 3.67 5.73 -104.61 -0.60 3.07 16 12 C -0.42 -10.11 8.55 -38.00 -0.32 -10.44 16 13 H 0.09 2.09 7.38 -52.48 -0.39 1.71 16 14 C 0.08 1.67 5.15 -17.29 -0.09 1.58 16 15 N -0.76 -16.89 10.97 55.56 0.61 -16.28 16 16 Si 0.92 16.81 29.59 -169.99 -5.03 11.78 16 17 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 18 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 19 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 20 C -0.19 -4.31 5.93 -104.27 -0.62 -4.93 16 21 C 0.30 7.03 14.30 -22.45 -0.32 6.71 16 22 N -0.51 -12.32 18.54 41.86 0.78 -11.54 16 23 C -0.01 -0.11 9.17 -38.83 -0.36 -0.46 16 24 C -0.05 -0.84 5.86 -104.25 -0.61 -1.45 16 25 C -0.11 -1.61 7.59 36.00 0.27 -1.33 16 26 C -0.12 -1.76 5.89 -104.52 -0.62 -2.38 16 27 C -0.10 -1.24 8.95 36.00 0.32 -0.91 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.54 7.65 -51.93 -0.40 0.15 16 32 H 0.06 0.54 7.65 -51.93 -0.40 0.15 16 33 H 0.12 1.44 6.28 -52.48 -0.33 1.11 16 34 H 0.12 1.89 8.03 -52.48 -0.42 1.47 16 35 H 0.10 1.73 6.76 -52.49 -0.35 1.37 16 36 H 0.12 2.79 6.20 -52.48 -0.33 2.47 16 37 H 0.29 5.86 8.29 -40.82 -0.34 5.52 16 38 H 0.10 1.85 8.01 -52.48 -0.42 1.43 16 39 H 0.07 0.91 7.46 -51.93 -0.39 0.53 16 40 H 0.06 0.72 6.71 -51.93 -0.35 0.38 16 41 H 0.08 1.28 6.46 -51.93 -0.34 0.94 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.72 6.71 -51.93 -0.35 0.37 16 44 H 0.06 0.76 7.52 -51.93 -0.39 0.37 16 LS Contribution 367.84 15.07 5.54 5.54 Total: -1.00 -25.75 367.84 -9.00 -34.75 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -5.67 Total: 5.20 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: -5.06 Total: -25.05 kcal Atomic # 7 Polarization: -29.21 SS G_CDS: 1.39 Total: -27.83 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: -0.18 Total: -4.40 kcal Atomic # 14 Polarization: 16.81 SS G_CDS: -5.03 Total: 11.78 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -25.75 -9.00 -34.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244058269.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.255 kcal (2) G-P(sol) polarization free energy of solvation -25.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds