Wall clock time and date at job start Tue Mar 31 2020 12:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42896 * 109.46884 * 2 1 4 4 C 1.35809 * 116.99705 * 180.02562 * 3 2 1 5 5 C 1.38978 * 119.91725 * 359.97438 * 4 3 2 6 6 C 1.37745 * 120.08712 * 180.02562 * 5 4 3 7 7 C 1.39698 * 119.91796 * 359.97438 * 6 5 4 8 8 C 1.47920 * 120.08958 * 179.97438 * 7 6 5 9 9 C 1.40029 * 119.50379 * 130.21377 * 8 7 6 10 10 C 1.35975 * 121.18854 * 180.25906 * 9 8 7 11 11 C 1.41066 * 120.11043 * 359.79042 * 10 9 8 12 12 C 1.40411 * 120.48014 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99730 * 154.64563 * 12 11 10 14 14 C 1.40272 * 120.00419 * 334.64370 * 12 11 10 15 15 N 1.30651 * 119.99627 * 342.93892 * 14 12 11 16 16 Si 1.86800 * 120.00335 * 162.93985 * 14 12 11 17 17 H 1.48498 * 109.46846 * 59.99957 * 16 14 12 18 18 H 1.48499 * 109.47181 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47244 * 300.00360 * 16 14 12 20 20 C 1.46657 * 119.03172 * 359.97438 * 11 10 9 21 21 C 1.43198 * 120.56047 * 180.02562 * 20 11 10 22 22 N 9.61520 * 137.24327 * 336.27029 * 3 1 2 23 23 C 1.39058 * 118.87009 * 0.02562 * 20 11 10 24 24 C 1.39667 * 119.82595 * 0.25850 * 7 6 5 25 25 C 1.50694 * 120.04402 * 179.72542 * 24 7 6 26 26 C 1.37793 * 119.91137 * 359.46303 * 24 7 6 27 27 C 1.50697 * 119.96019 * 180.27784 * 26 24 7 28 28 H 1.08994 * 109.47272 * 300.00061 * 1 2 3 29 29 H 1.08994 * 109.47062 * 60.00685 * 1 2 3 30 30 H 1.09006 * 109.46913 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47213 * 239.99251 * 2 1 3 32 32 H 1.09002 * 109.46771 * 119.99482 * 2 1 3 33 33 H 1.08007 * 119.95477 * 359.97438 * 5 4 3 34 34 H 1.08005 * 120.04497 * 179.97438 * 6 5 4 35 35 H 1.08001 * 119.40489 * 0.02562 * 9 8 7 36 36 H 1.08003 * 119.94331 * 179.76666 * 10 9 8 37 37 H 0.97003 * 119.99596 * 179.97438 * 15 14 12 38 38 H 1.08006 * 120.09261 * 179.97438 * 23 20 11 39 39 H 1.08997 * 109.47364 * 89.99685 * 25 24 7 40 40 H 1.09004 * 109.47253 * 209.99776 * 25 24 7 41 41 H 1.09003 * 109.46772 * 329.99394 * 25 24 7 42 42 H 1.08996 * 109.47171 * 270.28387 * 27 26 24 43 43 H 1.09006 * 109.47010 * 30.28032 * 27 26 24 44 44 H 1.08997 * 109.47428 * 150.27749 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3527 1.5252 -0.0005 5 6 4.1977 0.4218 -0.0005 6 6 5.5638 0.5982 -0.0005 7 6 6.0998 1.8883 -0.0011 8 6 7.5662 2.0821 -0.0006 9 6 8.1472 2.9520 -0.9315 10 6 9.4918 3.1517 -0.9649 11 6 10.3298 2.4814 -0.0493 12 6 11.7193 2.6814 -0.0772 13 1 12.3054 2.5255 0.8165 14 6 12.3463 3.0838 -1.2657 15 7 11.7254 2.9543 -2.4080 16 14 14.0688 3.8046 -1.2154 17 1 15.0053 2.8089 -0.6351 18 1 14.5027 4.1468 -2.5938 19 1 14.0682 5.0305 -0.3774 20 6 9.7285 1.5726 0.9322 21 6 10.5482 0.8758 1.8772 22 7 11.1987 0.3219 2.6269 23 6 8.3488 1.3991 0.9295 24 6 5.2473 2.9946 0.0038 25 6 5.8202 4.3884 0.0095 26 6 3.8818 2.8100 -0.0020 27 6 2.9611 4.0030 -0.0031 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 3.7827 -0.5753 0.0003 34 1 6.2199 -0.2598 -0.0001 35 1 7.5163 3.4707 -1.6381 36 1 9.9189 3.8243 -1.6940 37 1 12.1588 3.2329 -3.2299 38 1 7.8851 0.7342 1.6433 39 1 5.9580 4.7288 -1.0168 40 1 5.1352 5.0607 0.5263 41 1 6.7816 4.3840 0.5231 42 1 2.7391 4.2915 1.0243 43 1 3.4437 4.8340 -0.5175 44 1 2.0346 3.7465 -0.5168 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244058269.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:47 Heat of formation + Delta-G solvation = -1.071931 kcal Electronic energy + Delta-G solvation = -25528.610394 eV Core-core repulsion = 21988.497060 eV Total energy + Delta-G solvation = -3540.113334 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.26413 -39.74772 -38.46770 -36.94066 -35.88548 -34.28291 -33.40022 -32.12571 -31.59495 -30.55324 -28.63160 -27.18282 -26.73744 -24.36129 -23.95424 -23.41436 -21.56401 -21.22183 -19.46756 -18.63094 -18.58405 -17.35694 -17.02036 -16.97835 -16.26465 -15.73224 -15.61641 -15.15297 -14.91043 -14.64685 -14.53606 -14.40312 -13.97847 -13.86804 -13.79355 -13.63780 -13.49984 -13.38085 -13.36220 -13.22536 -13.19270 -12.94384 -12.85456 -12.57419 -12.43504 -12.29005 -12.15043 -12.04338 -11.61535 -11.48757 -11.47169 -11.34112 -11.13384 -9.60519 -9.42567 -9.39601 -8.90161 -8.58599 -6.49447 0.33925 0.47511 0.52103 1.09422 1.36832 1.46759 1.53701 2.02685 2.12910 2.36114 2.38218 2.64056 2.90379 3.60246 3.64712 3.95398 3.97532 4.10456 4.13482 4.25068 4.34166 4.36136 4.41296 4.44350 4.55307 4.63016 4.80527 4.89120 4.90089 4.93616 4.96604 4.98951 5.01310 5.03853 5.12308 5.25210 5.25342 5.28841 5.40360 5.47926 5.52252 5.58538 5.77700 5.86427 5.94436 6.04271 6.13372 6.18533 6.46766 6.59206 6.63623 6.80976 6.96834 8.05518 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020578 B = 0.002887 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.328796 B = 9696.535635 C =10409.706336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.044 3.956 3 O -0.325 6.325 4 C 0.107 3.893 5 C -0.208 4.208 6 C -0.095 4.095 7 C -0.055 4.055 8 C -0.175 4.175 9 C -0.045 4.045 10 C -0.178 4.178 11 C 0.135 3.865 12 C -0.458 4.458 13 H 0.070 0.930 14 C 0.046 3.954 15 N -0.779 5.779 16 Si 0.977 3.023 17 H -0.269 1.269 18 H -0.254 1.254 19 H -0.255 1.255 20 C -0.210 4.210 21 C 0.305 3.695 22 N -0.532 5.532 23 C -0.010 4.010 24 C -0.055 4.055 25 C -0.112 4.112 26 C -0.128 4.128 27 C -0.098 4.098 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.142 0.858 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.302 0.698 38 H 0.112 0.888 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.944 1.632 -2.247 18.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.030 4.030 3 O -0.239 6.239 4 C 0.062 3.938 5 C -0.226 4.226 6 C -0.113 4.113 7 C -0.055 4.055 8 C -0.176 4.176 9 C -0.064 4.064 10 C -0.198 4.198 11 C 0.130 3.870 12 C -0.485 4.485 13 H 0.088 0.912 14 C -0.176 4.176 15 N -0.401 5.401 16 Si 0.797 3.203 17 H -0.194 1.194 18 H -0.178 1.178 19 H -0.179 1.179 20 C -0.216 4.216 21 C -0.004 4.004 22 N -0.212 5.212 23 C -0.030 4.030 24 C -0.055 4.055 25 C -0.168 4.168 26 C -0.129 4.129 27 C -0.154 4.154 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.116 0.884 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.160 0.840 34 H 0.141 0.859 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.114 0.886 38 H 0.130 0.870 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.094 0.933 -1.366 17.174 hybrid contribution 1.001 -0.214 -0.257 1.055 sum -16.094 0.719 -1.623 16.191 Atomic orbital electron populations 1.21781 0.91285 1.04030 1.03213 1.23013 0.96943 0.81235 1.01853 1.85986 1.18483 1.30626 1.88835 1.18919 0.82577 0.93672 0.98597 1.21234 0.93656 0.98545 1.09214 1.21171 0.94630 0.96587 0.98943 1.18706 0.91798 0.92810 1.02192 1.17898 0.90996 1.06684 1.02051 1.20697 0.94229 0.95560 0.95940 1.20876 0.92585 1.03720 1.02575 1.18731 0.93170 0.86436 0.88684 1.19832 0.93399 1.38160 0.97151 0.91194 1.26767 1.04466 0.92597 0.93757 1.69706 1.40315 1.30224 0.99858 0.85301 0.75944 0.79533 0.79513 1.19426 1.17770 1.17880 1.16950 0.91470 1.08728 1.04459 1.26042 0.91693 0.91242 0.91390 1.81016 1.10612 1.14784 1.14768 1.20696 0.90432 0.95824 0.96092 1.19839 0.91437 0.96006 0.98220 1.20894 1.01202 0.91869 1.02819 1.19236 0.93526 0.93412 1.06730 1.20600 0.97810 0.94499 1.02509 0.91789 0.91744 0.88413 0.91654 0.91698 0.83989 0.85902 0.86598 0.86378 0.88588 0.87005 0.90349 0.90055 0.91919 0.91076 0.90428 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 10.28 71.98 0.74 -1.00 16 2 C 0.04 0.75 5.46 71.98 0.39 1.14 16 3 O -0.32 -7.76 9.16 -91.41 -0.84 -8.60 16 4 C 0.11 2.94 6.67 22.62 0.15 3.09 16 5 C -0.21 -5.62 9.02 22.33 0.20 -5.42 16 6 C -0.10 -2.96 9.47 22.51 0.21 -2.75 16 7 C -0.05 -1.86 5.45 -20.01 -0.11 -1.97 16 8 C -0.17 -6.73 4.74 -19.99 -0.09 -6.83 16 9 C -0.05 -1.79 7.74 22.18 0.17 -1.62 16 10 C -0.18 -8.02 8.62 22.44 0.19 -7.83 16 11 C 0.14 6.60 5.73 -19.86 -0.11 6.49 16 12 C -0.46 -22.80 8.55 23.29 0.20 -22.60 16 13 H 0.07 3.59 7.38 -2.91 -0.02 3.56 16 14 C 0.05 2.07 5.15 85.36 0.44 2.51 16 15 N -0.78 -35.20 10.97 21.88 0.24 -34.96 16 16 Si 0.98 34.74 29.59 68.60 2.03 36.77 16 17 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 18 H -0.25 -8.20 7.11 99.48 0.71 -7.50 16 19 H -0.25 -8.89 7.11 99.48 0.71 -8.18 16 20 C -0.21 -9.80 5.93 -19.64 -0.12 -9.92 16 21 C 0.30 14.76 14.30 88.32 1.26 16.02 16 22 N -0.53 -26.37 18.54 19.01 0.35 -26.01 16 23 C -0.01 -0.40 9.17 22.75 0.21 -0.19 16 24 C -0.05 -1.66 5.86 -19.63 -0.11 -1.77 16 25 C -0.11 -2.97 7.59 71.23 0.54 -2.43 16 26 C -0.13 -3.56 5.89 -19.80 -0.12 -3.67 16 27 C -0.10 -2.11 8.95 71.24 0.64 -1.48 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 30 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.07 1.02 7.65 -2.39 -0.02 1.00 16 32 H 0.06 1.02 7.65 -2.39 -0.02 1.00 16 33 H 0.14 3.06 6.28 -2.91 -0.02 3.05 16 34 H 0.12 3.70 8.03 -2.91 -0.02 3.68 16 35 H 0.12 4.05 6.76 -2.91 -0.02 4.03 16 36 H 0.12 5.41 6.20 -2.91 -0.02 5.39 16 37 H 0.30 12.09 8.29 -92.71 -0.77 11.33 16 38 H 0.11 4.22 8.01 -2.91 -0.02 4.20 16 39 H 0.08 1.92 7.46 -2.39 -0.02 1.90 16 40 H 0.08 1.78 6.71 -2.38 -0.02 1.76 16 41 H 0.06 1.91 6.46 -2.39 -0.02 1.89 16 42 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.08 1.47 6.71 -2.38 -0.02 1.45 16 44 H 0.07 1.41 7.52 -2.39 -0.02 1.40 16 Total: -1.00 -56.10 367.84 7.50 -48.59 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 1.03 Total: 24.43 kcal Atomic # 6 Polarization: -44.91 SS G_CDS: 4.69 Total: -40.22 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: 0.59 Total: -60.97 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -0.84 Total: -8.60 kcal Atomic # 14 Polarization: 34.74 SS G_CDS: 2.03 Total: 36.77 kcal Total: -56.10 7.50 -48.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244058269.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.522 kcal (2) G-P(sol) polarization free energy of solvation -56.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds