Wall clock time and date at job start Tue Mar 31 2020 12:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42906 * 109.47242 * 2 1 4 4 C 1.35846 * 117.00141 * 180.02562 * 3 2 1 5 5 C 1.38883 * 119.93243 * 359.97438 * 4 3 2 6 6 C 1.37856 * 120.06622 * 179.72568 * 5 4 3 7 7 C 1.39451 * 119.93504 * 0.27654 * 6 5 4 8 8 C 1.48264 * 120.07193 * 179.97438 * 7 6 5 9 9 C 1.39838 * 119.53856 * 129.99620 * 8 7 6 10 10 C 1.37701 * 121.16502 * 180.02562 * 9 8 7 11 11 C 1.39586 * 120.19019 * 359.95651 * 10 9 8 12 12 C 1.43199 * 120.45305 * 180.02562 * 11 10 9 13 13 N 9.62285 * 163.55679 * 2.77259 * 4 1 2 14 14 C 1.46548 * 119.09449 * 0.02567 * 11 10 9 15 15 C 1.40845 * 120.55327 * 179.97438 * 14 11 10 16 16 H 1.08001 * 119.99908 * 24.38369 * 15 14 11 17 17 C 1.40227 * 119.99821 * 204.37717 * 15 14 11 18 18 N 1.30662 * 120.00180 * 17.31716 * 17 15 14 19 19 Si 1.86794 * 120.00245 * 197.30835 * 17 15 14 20 20 H 1.48507 * 109.46818 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47434 * 120.00296 * 19 17 15 22 22 H 1.48497 * 109.47708 * 240.00498 * 19 17 15 23 23 C 1.38634 * 119.53509 * 309.73149 * 8 7 6 24 24 C 1.39422 * 119.86079 * 359.97438 * 7 6 5 25 25 C 1.50697 * 120.03086 * 180.02562 * 24 7 6 26 26 C 1.37895 * 119.92956 * 359.97438 * 24 7 6 27 27 C 1.50703 * 119.96382 * 179.97438 * 26 24 7 28 28 H 1.09005 * 109.46869 * 299.99796 * 1 2 3 29 29 H 1.08988 * 109.47376 * 60.00120 * 1 2 3 30 30 H 1.09002 * 109.46997 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47397 * 239.99758 * 2 1 3 32 32 H 1.09001 * 109.47548 * 119.99673 * 2 1 3 33 33 H 1.07993 * 119.96150 * 0.02562 * 5 4 3 34 34 H 1.08001 * 120.03154 * 180.30061 * 6 5 4 35 35 H 1.07998 * 119.41947 * 0.02562 * 9 8 7 36 36 H 1.08000 * 119.89925 * 179.97438 * 10 9 8 37 37 H 0.96998 * 120.00430 * 184.51941 * 18 17 15 38 38 H 1.08002 * 120.13666 * 359.97438 * 23 8 7 39 39 H 1.09007 * 109.46893 * 90.00662 * 25 24 7 40 40 H 1.09005 * 109.46646 * 209.99801 * 25 24 7 41 41 H 1.08996 * 109.47564 * 330.00331 * 25 24 7 42 42 H 1.08994 * 109.46649 * 90.00539 * 27 26 24 43 43 H 1.08998 * 109.47044 * 210.00179 * 27 26 24 44 44 H 1.09000 * 109.47296 * 330.00234 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3531 1.5253 -0.0005 5 6 4.1978 0.4229 -0.0005 6 6 5.5649 0.6003 -0.0068 7 6 6.0995 1.8883 -0.0073 8 6 7.5693 2.0827 -0.0135 9 6 8.1462 2.9496 -0.9468 10 6 9.5074 3.1545 -0.9828 11 6 10.3408 2.4942 -0.0784 12 6 11.7570 2.7036 -0.1104 13 7 12.8806 2.8703 -0.1328 14 6 9.7466 1.5837 0.9042 15 6 10.5588 0.9012 1.8307 16 1 11.5237 1.3034 2.1021 17 6 10.1145 -0.3005 2.4007 18 7 9.1332 -0.9625 1.8475 19 14 10.9255 -0.9549 3.9509 20 1 12.0034 -0.0258 4.3757 21 1 9.9126 -1.0643 5.0313 22 1 11.5053 -2.2947 3.6786 23 6 8.3519 1.4066 0.9098 24 6 5.2488 2.9930 -0.0020 25 6 5.8224 4.3865 -0.0032 26 6 3.8822 2.8089 0.0031 27 6 2.9620 4.0024 0.0094 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.7832 -0.5743 -0.0005 34 1 6.2213 -0.2573 -0.0117 35 1 7.5130 3.4675 -1.6519 36 1 9.9313 3.8284 -1.7126 37 1 8.7822 -1.7583 2.2769 38 1 7.8925 0.7437 1.6281 39 1 5.9557 4.7237 -1.0312 40 1 5.1400 5.0606 0.5147 41 1 6.7861 4.3833 0.5060 42 1 2.7360 4.2922 -1.0167 43 1 2.0375 3.7456 0.5265 44 1 3.4471 4.8325 0.5230 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244059100.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:44 Heat of formation + Delta-G solvation = 9.867786 kcal Electronic energy + Delta-G solvation = -25812.791384 eV Core-core repulsion = 22273.152431 eV Total energy + Delta-G solvation = -3539.638953 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.16474 -38.34784 -37.07930 -35.09665 -34.14849 -33.18164 -32.36168 -31.07587 -29.91862 -28.99837 -26.82376 -26.12470 -25.67202 -23.58594 -22.81328 -21.18309 -20.18061 -20.12052 -17.71036 -17.55173 -17.08191 -16.11947 -16.04488 -15.62064 -14.96160 -14.27087 -14.02679 -13.81079 -13.62108 -13.32903 -12.98584 -12.94540 -12.84603 -12.73624 -12.65424 -12.63412 -12.45044 -12.08559 -11.82170 -11.76351 -11.62900 -11.48626 -11.39725 -11.26114 -11.20996 -11.05359 -10.83427 -10.65623 -10.39383 -10.35438 -9.89838 -9.74820 -9.46374 -8.28984 -8.03515 -7.74391 -7.27971 -7.02059 -4.71217 1.53481 1.68916 2.27861 2.65208 2.92973 2.99107 3.05670 3.27816 3.70791 3.92694 3.95402 4.26636 4.46456 4.79194 4.84060 5.03320 5.11619 5.13951 5.32451 5.33554 5.39778 5.45432 5.47805 5.61821 5.62568 5.70257 5.78101 5.84283 5.87617 5.97575 6.05901 6.12530 6.20613 6.30525 6.39369 6.57039 6.67809 6.71535 6.72996 6.87709 6.96345 7.05115 7.12056 7.24603 7.49638 7.64103 7.69456 7.79330 7.89190 8.22208 8.44322 8.55325 8.84063 9.75696 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012968 B = 0.003720 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.644768 B = 7524.302519 C = 9163.086930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.317 6.317 4 C 0.117 3.883 5 C -0.212 4.212 6 C -0.066 4.066 7 C -0.056 4.056 8 C -0.012 4.012 9 C -0.231 4.231 10 C -0.031 4.031 11 C -0.188 4.188 12 C 0.300 3.700 13 N -0.512 5.512 14 C 0.151 3.849 15 C -0.430 4.430 16 H 0.085 0.915 17 C 0.078 3.922 18 N -0.765 5.765 19 Si 0.911 3.089 20 H -0.256 1.256 21 H -0.266 1.266 22 H -0.270 1.270 23 C -0.144 4.144 24 C -0.040 4.040 25 C -0.115 4.115 26 C -0.125 4.125 27 C -0.102 4.102 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.121 0.879 34 H 0.132 0.868 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.289 0.711 38 H 0.128 0.872 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.872 0.744 -1.126 16.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.232 6.232 4 C 0.072 3.928 5 C -0.231 4.231 6 C -0.085 4.085 7 C -0.056 4.056 8 C -0.013 4.013 9 C -0.251 4.251 10 C -0.052 4.052 11 C -0.194 4.194 12 C -0.009 4.009 13 N -0.192 5.192 14 C 0.146 3.854 15 C -0.458 4.458 16 H 0.103 0.897 17 C -0.144 4.144 18 N -0.388 5.388 19 Si 0.734 3.266 20 H -0.179 1.179 21 H -0.191 1.191 22 H -0.195 1.195 23 C -0.163 4.163 24 C -0.040 4.040 25 C -0.172 4.172 26 C -0.125 4.125 27 C -0.158 4.158 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.139 0.861 34 H 0.150 0.850 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.100 0.900 38 H 0.146 0.854 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.100 0.900 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.391 0.885 -1.177 15.461 hybrid contribution -0.082 -0.990 0.630 1.177 sum -15.473 -0.105 -0.547 15.483 Atomic orbital electron populations 1.21758 0.93136 1.02571 1.03285 1.22705 0.95423 0.82597 1.01357 1.85986 1.19518 1.28560 1.89124 1.18728 0.81727 0.93603 0.98738 1.21067 0.94349 0.97390 1.10258 1.21151 0.93820 0.97197 0.96284 1.18895 0.93224 0.92034 1.01497 1.18422 0.89701 0.96793 0.96345 1.20153 0.93752 1.06723 1.04429 1.20371 0.92977 0.96353 0.95454 1.16982 0.83484 1.13578 1.05342 1.25836 0.92805 0.91010 0.91273 1.81018 1.12585 1.13495 1.12057 1.18353 0.91666 0.87649 0.87772 1.19788 1.03724 1.03511 1.18786 0.89686 1.26047 0.94601 0.95783 0.98004 1.69714 1.20597 1.13706 1.34762 0.86182 0.80456 0.79446 0.80547 1.17925 1.19112 1.19471 1.21364 0.92372 1.02000 1.00580 1.19622 0.91055 0.95749 0.97624 1.20957 1.01774 0.92103 1.02322 1.18884 0.93452 0.92246 1.07947 1.20602 0.98197 0.95248 1.01761 0.91685 0.91686 0.90641 0.92238 0.92220 0.86071 0.85041 0.88270 0.88318 0.89969 0.85426 0.91121 0.91996 0.90018 0.91936 0.91813 0.91480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 37.16 0.38 -0.75 16 2 C 0.05 0.55 5.46 37.16 0.20 0.75 16 3 O -0.32 -4.24 9.17 -19.26 -0.18 -4.42 16 4 C 0.12 1.76 6.66 -39.12 -0.26 1.50 16 5 C -0.21 -3.21 9.02 -39.48 -0.36 -3.57 16 6 C -0.07 -1.15 9.46 -39.27 -0.37 -1.52 16 7 C -0.06 -1.02 5.45 -104.88 -0.57 -1.59 16 8 C -0.01 -0.23 4.72 -105.03 -0.50 -0.73 16 9 C -0.23 -4.43 7.81 -39.18 -0.31 -4.74 16 10 C -0.03 -0.62 9.74 -39.27 -0.38 -1.00 16 11 C -0.19 -4.28 5.95 -104.12 -0.62 -4.90 16 12 C 0.30 7.07 14.28 -22.47 -0.32 6.75 16 13 N -0.51 -12.43 18.54 41.84 0.78 -11.65 16 14 C 0.15 3.62 5.73 -104.67 -0.60 3.02 16 15 C -0.43 -10.50 8.58 -37.85 -0.32 -10.83 16 16 H 0.09 2.12 7.37 -52.49 -0.39 1.74 16 17 C 0.08 1.76 5.16 -17.30 -0.09 1.67 16 18 N -0.77 -17.28 10.94 55.56 0.61 -16.67 16 19 Si 0.91 17.27 29.60 -169.99 -5.03 12.24 16 20 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 21 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 22 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 23 C -0.14 -3.24 8.11 -38.55 -0.31 -3.55 16 24 C -0.04 -0.65 5.85 -104.31 -0.61 -1.26 16 25 C -0.12 -1.62 8.01 36.00 0.29 -1.33 16 26 C -0.12 -1.88 5.89 -104.52 -0.62 -2.50 16 27 C -0.10 -1.24 9.37 36.01 0.34 -0.90 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.49 8.14 -51.94 -0.42 0.06 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.56 7.65 -51.93 -0.40 0.16 16 32 H 0.06 0.57 7.66 -51.93 -0.40 0.18 16 33 H 0.12 1.55 6.28 -52.49 -0.33 1.22 16 34 H 0.13 2.33 8.03 -52.49 -0.42 1.91 16 35 H 0.10 1.70 6.75 -52.49 -0.35 1.35 16 36 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.29 5.85 8.30 -40.82 -0.34 5.51 16 38 H 0.13 2.96 6.13 -52.49 -0.32 2.64 16 39 H 0.07 0.91 7.45 -51.93 -0.39 0.53 16 40 H 0.06 0.74 5.94 -51.93 -0.31 0.43 16 41 H 0.08 1.27 6.44 -51.93 -0.33 0.94 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.76 7.53 -51.93 -0.39 0.37 16 44 H 0.07 0.73 5.94 -51.93 -0.31 0.43 16 LS Contribution 367.20 15.07 5.53 5.53 Total: -1.00 -26.14 367.20 -8.90 -35.04 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -5.59 Total: 5.41 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -5.03 Total: -25.48 kcal Atomic # 7 Polarization: -29.71 SS G_CDS: 1.38 Total: -28.33 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -0.18 Total: -4.42 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.03 Total: 12.24 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -26.14 -8.90 -35.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244059100.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.906 kcal (2) G-P(sol) polarization free energy of solvation -26.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds