Wall clock time and date at job start Tue Mar 31 2020 12:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42906 * 109.47242 * 2 1 4 4 C 1.35846 * 117.00141 * 180.02562 * 3 2 1 5 5 C 1.38883 * 119.93243 * 359.97438 * 4 3 2 6 6 C 1.37856 * 120.06622 * 179.72568 * 5 4 3 7 7 C 1.39451 * 119.93504 * 0.27654 * 6 5 4 8 8 C 1.48264 * 120.07193 * 179.97438 * 7 6 5 9 9 C 1.39838 * 119.53856 * 129.99620 * 8 7 6 10 10 C 1.37701 * 121.16502 * 180.02562 * 9 8 7 11 11 C 1.39586 * 120.19019 * 359.95651 * 10 9 8 12 12 C 1.43199 * 120.45305 * 180.02562 * 11 10 9 13 13 N 9.62285 * 163.55679 * 2.77259 * 4 1 2 14 14 C 1.46548 * 119.09449 * 0.02567 * 11 10 9 15 15 C 1.40845 * 120.55327 * 179.97438 * 14 11 10 16 16 H 1.08001 * 119.99908 * 24.38369 * 15 14 11 17 17 C 1.40227 * 119.99821 * 204.37717 * 15 14 11 18 18 N 1.30662 * 120.00180 * 17.31716 * 17 15 14 19 19 Si 1.86794 * 120.00245 * 197.30835 * 17 15 14 20 20 H 1.48507 * 109.46818 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47434 * 120.00296 * 19 17 15 22 22 H 1.48497 * 109.47708 * 240.00498 * 19 17 15 23 23 C 1.38634 * 119.53509 * 309.73149 * 8 7 6 24 24 C 1.39422 * 119.86079 * 359.97438 * 7 6 5 25 25 C 1.50697 * 120.03086 * 180.02562 * 24 7 6 26 26 C 1.37895 * 119.92956 * 359.97438 * 24 7 6 27 27 C 1.50703 * 119.96382 * 179.97438 * 26 24 7 28 28 H 1.09005 * 109.46869 * 299.99796 * 1 2 3 29 29 H 1.08988 * 109.47376 * 60.00120 * 1 2 3 30 30 H 1.09002 * 109.46997 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47397 * 239.99758 * 2 1 3 32 32 H 1.09001 * 109.47548 * 119.99673 * 2 1 3 33 33 H 1.07993 * 119.96150 * 0.02562 * 5 4 3 34 34 H 1.08001 * 120.03154 * 180.30061 * 6 5 4 35 35 H 1.07998 * 119.41947 * 0.02562 * 9 8 7 36 36 H 1.08000 * 119.89925 * 179.97438 * 10 9 8 37 37 H 0.96998 * 120.00430 * 184.51941 * 18 17 15 38 38 H 1.08002 * 120.13666 * 359.97438 * 23 8 7 39 39 H 1.09007 * 109.46893 * 90.00662 * 25 24 7 40 40 H 1.09005 * 109.46646 * 209.99801 * 25 24 7 41 41 H 1.08996 * 109.47564 * 330.00331 * 25 24 7 42 42 H 1.08994 * 109.46649 * 90.00539 * 27 26 24 43 43 H 1.08998 * 109.47044 * 210.00179 * 27 26 24 44 44 H 1.09000 * 109.47296 * 330.00234 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3531 1.5253 -0.0005 5 6 4.1978 0.4229 -0.0005 6 6 5.5649 0.6003 -0.0068 7 6 6.0995 1.8883 -0.0073 8 6 7.5693 2.0827 -0.0135 9 6 8.1462 2.9496 -0.9468 10 6 9.5074 3.1545 -0.9828 11 6 10.3408 2.4942 -0.0784 12 6 11.7570 2.7036 -0.1104 13 7 12.8806 2.8703 -0.1328 14 6 9.7466 1.5837 0.9042 15 6 10.5588 0.9012 1.8307 16 1 11.5237 1.3034 2.1021 17 6 10.1145 -0.3005 2.4007 18 7 9.1332 -0.9625 1.8475 19 14 10.9255 -0.9549 3.9509 20 1 12.0034 -0.0258 4.3757 21 1 9.9126 -1.0643 5.0313 22 1 11.5053 -2.2947 3.6786 23 6 8.3519 1.4066 0.9098 24 6 5.2488 2.9930 -0.0020 25 6 5.8224 4.3865 -0.0032 26 6 3.8822 2.8089 0.0031 27 6 2.9620 4.0024 0.0094 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.7832 -0.5743 -0.0005 34 1 6.2213 -0.2573 -0.0117 35 1 7.5130 3.4675 -1.6519 36 1 9.9313 3.8284 -1.7126 37 1 8.7822 -1.7583 2.2769 38 1 7.8925 0.7437 1.6281 39 1 5.9557 4.7237 -1.0312 40 1 5.1400 5.0606 0.5147 41 1 6.7861 4.3833 0.5060 42 1 2.7360 4.2922 -1.0167 43 1 2.0375 3.7456 0.5265 44 1 3.4471 4.8325 0.5230 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244059100.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:43 Heat of formation + Delta-G solvation = 0.681859 kcal Electronic energy + Delta-G solvation = -25813.189716 eV Core-core repulsion = 22273.152431 eV Total energy + Delta-G solvation = -3540.037284 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.32790 -39.73837 -38.47615 -36.91309 -35.80997 -34.37449 -33.51526 -32.14437 -31.59858 -30.29304 -28.14189 -27.36140 -27.20937 -24.53235 -24.18883 -22.83815 -21.55321 -21.25309 -19.43496 -18.77431 -18.62666 -17.27583 -17.14164 -17.00928 -16.41774 -15.72376 -15.24531 -15.06683 -14.93043 -14.82658 -14.51579 -14.42388 -14.19796 -13.86428 -13.84111 -13.53099 -13.49083 -13.39709 -13.35433 -13.26224 -13.05205 -12.89868 -12.73865 -12.64761 -12.43101 -12.28426 -12.21808 -12.06292 -11.61118 -11.51382 -11.47929 -11.30592 -11.12809 -9.57081 -9.45325 -9.41936 -8.88973 -8.52757 -6.50806 0.08060 0.46401 0.75572 1.03039 1.35262 1.47488 1.50353 2.05637 2.13473 2.32014 2.35226 2.67782 2.87531 3.62902 3.67647 3.92400 3.94181 3.99515 4.09513 4.22474 4.27368 4.39674 4.41946 4.43858 4.56182 4.74883 4.75784 4.82563 4.91216 4.97784 4.98294 4.99169 5.00318 5.07284 5.15308 5.24203 5.25787 5.27720 5.35260 5.47968 5.53827 5.61036 5.75862 5.83467 5.97118 5.97903 6.14990 6.18546 6.47969 6.55231 6.68286 6.81740 6.99386 8.09749 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012968 B = 0.003720 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.644768 B = 7524.302519 C = 9163.086930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.043 3.957 3 O -0.322 6.322 4 C 0.119 3.881 5 C -0.213 4.213 6 C -0.079 4.079 7 C -0.087 4.087 8 C 0.002 3.998 9 C -0.219 4.219 10 C -0.027 4.027 11 C -0.211 4.211 12 C 0.305 3.695 13 N -0.533 5.533 14 C 0.132 3.868 15 C -0.467 4.467 16 H 0.066 0.934 17 C 0.048 3.952 18 N -0.785 5.785 19 Si 0.972 3.028 20 H -0.267 1.267 21 H -0.252 1.252 22 H -0.263 1.263 23 C -0.165 4.165 24 C -0.041 4.041 25 C -0.114 4.114 26 C -0.132 4.132 27 C -0.098 4.098 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.142 0.858 34 H 0.116 0.884 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.299 0.701 38 H 0.114 0.886 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.655 1.256 -1.568 19.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 O -0.236 6.236 4 C 0.074 3.926 5 C -0.231 4.231 6 C -0.097 4.097 7 C -0.087 4.087 8 C 0.000 4.000 9 C -0.239 4.239 10 C -0.047 4.047 11 C -0.217 4.217 12 C -0.003 4.003 13 N -0.214 5.214 14 C 0.127 3.873 15 C -0.495 4.495 16 H 0.084 0.916 17 C -0.173 4.173 18 N -0.408 5.408 19 Si 0.792 3.208 20 H -0.191 1.191 21 H -0.176 1.176 22 H -0.187 1.187 23 C -0.184 4.184 24 C -0.042 4.042 25 C -0.170 4.170 26 C -0.132 4.132 27 C -0.154 4.154 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.116 0.884 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.160 0.840 34 H 0.134 0.866 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.110 0.890 38 H 0.132 0.868 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -18.196 1.396 -1.633 18.322 hybrid contribution 0.555 -1.140 0.673 1.436 sum -17.640 0.256 -0.960 17.668 Atomic orbital electron populations 1.21777 0.91085 1.04064 1.03303 1.23035 0.97070 0.81166 1.01879 1.86002 1.18275 1.30690 1.88630 1.18897 0.82607 0.93630 0.97448 1.21221 0.93436 0.98750 1.09727 1.21095 0.94726 0.96557 0.97313 1.18889 0.92236 0.93241 1.04353 1.18672 0.91022 0.95274 0.94983 1.20481 0.93709 1.05736 1.03933 1.20677 0.93111 0.95946 0.94983 1.17212 0.83403 1.14635 1.06433 1.26055 0.93022 0.90492 0.90727 1.80991 1.12997 1.14459 1.12905 1.18620 0.92444 0.88121 0.88145 1.19840 1.03606 1.05101 1.20967 0.91550 1.26659 0.95090 0.95334 1.00193 1.69716 1.21217 1.14162 1.35744 0.85295 0.79443 0.78570 0.77488 1.19139 1.17575 1.18734 1.21248 0.92038 1.03403 1.01732 1.19812 0.91419 0.95992 0.96941 1.20987 1.01222 0.91425 1.03374 1.19244 0.93492 0.93478 1.07004 1.20646 0.97673 0.94327 1.02804 0.91735 0.91581 0.88430 0.91574 0.91836 0.84042 0.86593 0.85434 0.85582 0.88962 0.86835 0.89538 0.89646 0.91936 0.90652 0.91539 0.90109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 10.28 71.98 0.74 -1.05 16 2 C 0.04 0.76 5.46 71.98 0.39 1.15 16 3 O -0.32 -7.81 9.17 -91.82 -0.84 -8.65 16 4 C 0.12 3.36 6.66 22.57 0.15 3.51 16 5 C -0.21 -6.21 9.02 22.33 0.20 -6.01 16 6 C -0.08 -2.73 9.46 22.47 0.21 -2.52 16 7 C -0.09 -3.13 5.45 -20.03 -0.11 -3.24 16 8 C 0.00 0.06 4.72 -20.13 -0.09 -0.03 16 9 C -0.22 -8.15 7.81 22.53 0.18 -7.98 16 10 C -0.03 -1.05 9.74 22.47 0.22 -0.83 16 11 C -0.21 -9.81 5.95 -19.54 -0.12 -9.93 16 12 C 0.31 14.76 14.28 88.33 1.26 16.02 16 13 N -0.53 -26.45 18.54 19.00 0.35 -26.10 16 14 C 0.13 6.58 5.73 -19.90 -0.11 6.47 16 15 C -0.47 -23.97 8.58 23.39 0.20 -23.77 16 16 H 0.07 3.53 7.37 -2.91 -0.02 3.51 16 17 C 0.05 2.23 5.16 85.35 0.44 2.67 16 18 N -0.79 -36.62 10.94 21.87 0.24 -36.39 16 19 Si 0.97 36.23 29.60 68.60 2.03 38.26 16 20 H -0.27 -10.35 7.11 99.48 0.71 -9.65 16 21 H -0.25 -8.72 7.11 99.48 0.71 -8.02 16 22 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 23 C -0.16 -7.70 8.11 22.94 0.19 -7.52 16 24 C -0.04 -1.27 5.85 -19.66 -0.12 -1.38 16 25 C -0.11 -2.92 8.01 71.23 0.57 -2.35 16 26 C -0.13 -3.66 5.89 -19.80 -0.12 -3.77 16 27 C -0.10 -2.06 9.37 71.24 0.67 -1.40 16 28 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 1.09 7.65 -2.39 -0.02 1.07 16 32 H 0.06 1.08 7.66 -2.39 -0.02 1.06 16 33 H 0.14 3.41 6.28 -2.91 -0.02 3.39 16 34 H 0.12 4.29 8.03 -2.91 -0.02 4.27 16 35 H 0.13 4.02 6.75 -2.91 -0.02 4.00 16 36 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 37 H 0.30 12.36 8.30 -92.71 -0.77 11.59 16 38 H 0.11 5.55 6.13 -2.91 -0.02 5.53 16 39 H 0.09 1.94 7.45 -2.38 -0.02 1.92 16 40 H 0.08 1.76 5.94 -2.38 -0.01 1.75 16 41 H 0.06 1.85 6.44 -2.39 -0.02 1.84 16 42 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 43 H 0.07 1.37 7.53 -2.39 -0.02 1.35 16 44 H 0.08 1.47 5.94 -2.39 -0.01 1.45 16 Total: -1.00 -58.10 367.20 7.57 -50.54 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: 1.03 Total: 24.27 kcal Atomic # 6 Polarization: -46.69 SS G_CDS: 4.75 Total: -41.94 kcal Atomic # 7 Polarization: -63.08 SS G_CDS: 0.59 Total: -62.49 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -0.84 Total: -8.65 kcal Atomic # 14 Polarization: 36.23 SS G_CDS: 2.03 Total: 38.26 kcal Total: -58.10 7.57 -50.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244059100.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.219 kcal (2) G-P(sol) polarization free energy of solvation -58.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds