Wall clock time and date at job start Tue Mar 31 2020 12:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42899 * 109.46952 * 2 1 4 4 C 1.35908 * 116.99709 * 179.97438 * 3 2 1 5 5 C 1.38524 * 119.99130 * 359.97438 * 4 3 2 6 6 C 1.39329 * 119.81035 * 179.72192 * 5 4 3 7 7 C 1.48204 * 120.10195 * 180.30463 * 6 5 4 8 8 C 1.39166 * 120.28019 * 303.41967 * 7 6 5 9 9 C 1.38319 * 120.10581 * 180.02562 * 8 7 6 10 10 C 1.38044 * 120.77448 * 0.02562 * 9 8 7 11 11 C 1.39118 * 120.23283 * 359.97438 * 10 9 8 12 12 N 1.38182 * 132.74006 * 180.02562 * 11 10 9 13 13 H 0.96998 * 124.70423 * 359.94846 * 12 11 10 14 14 C 1.35600 * 110.59162 * 179.22002 * 12 11 10 15 15 C 1.38986 * 109.24964 * 0.68291 * 14 12 11 16 16 C 1.40957 * 126.93348 * 179.46074 * 15 14 12 17 17 H 1.07996 * 120.00421 * 158.29749 * 16 15 14 18 18 C 1.39684 * 119.99823 * 338.29862 * 16 15 14 19 19 N 1.31080 * 120.00201 * 0.02562 * 18 16 15 20 20 Si 1.86810 * 120.00171 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.46928 * 89.99867 * 20 18 16 22 22 H 1.48499 * 109.46909 * 210.00026 * 20 18 16 23 23 H 1.48503 * 109.46908 * 329.99814 * 20 18 16 24 24 C 1.40189 * 120.28448 * 123.14844 * 7 6 5 25 25 C 1.39469 * 119.79646 * 0.28189 * 6 5 4 26 26 C 1.38010 * 119.97995 * 0.02562 * 25 6 5 27 27 C 1.38267 * 120.18547 * 359.97438 * 26 25 6 28 28 C 1.50704 * 119.89236 * 180.02562 * 27 26 25 29 29 H 1.08995 * 109.46973 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47159 * 300.00000 * 1 2 3 31 31 H 1.09001 * 109.46973 * 59.99913 * 1 2 3 32 32 H 1.08999 * 109.46889 * 239.99540 * 2 1 3 33 33 H 1.08997 * 109.46551 * 119.99877 * 2 1 3 34 34 H 1.08002 * 120.09194 * 0.02562 * 5 4 3 35 35 H 1.08003 * 119.94676 * 0.02801 * 8 7 6 36 36 H 1.08005 * 119.61565 * 179.97438 * 9 8 7 37 37 H 1.07994 * 119.88220 * 179.97438 * 10 9 8 38 38 H 1.08004 * 125.37289 * 180.08507 * 14 12 11 39 39 H 0.97001 * 120.00236 * 179.97438 * 19 18 16 40 40 H 1.08001 * 120.01465 * 179.97438 * 25 6 5 41 41 H 1.07992 * 119.90349 * 180.02562 * 26 25 6 42 42 H 1.09007 * 109.47169 * 90.00240 * 28 27 26 43 43 H 1.09000 * 109.46741 * 209.99521 * 28 27 26 44 44 H 1.08998 * 109.47186 * 330.00246 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5253 0.0005 5 6 4.1974 0.4266 0.0016 6 6 5.5781 0.6135 -0.0037 7 6 6.4866 -0.5574 -0.0094 8 6 6.3979 -1.5193 0.9924 9 6 7.2480 -2.6104 0.9838 10 6 8.1925 -2.7621 -0.0115 11 6 8.3013 -1.8145 -1.0242 12 7 9.1318 -1.7079 -2.1235 13 1 9.8221 -2.3477 -2.3583 14 6 8.8373 -0.5933 -2.8374 15 6 7.7986 0.0886 -2.2146 16 6 7.2075 1.2976 -2.6340 17 1 6.2131 1.5564 -2.3015 18 6 7.9079 2.1609 -3.4796 19 7 9.1147 1.8467 -3.8837 20 14 7.1244 3.7629 -4.0360 21 1 7.4584 4.8393 -3.0692 22 1 7.6416 4.1264 -5.3797 23 1 5.6502 3.5963 -4.1015 24 6 7.4388 -0.7084 -1.0272 25 6 6.1025 1.9058 -0.0041 26 6 5.2541 2.9944 0.0013 27 6 3.8841 2.8080 0.0066 28 6 2.9638 4.0014 0.0119 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.7860 -0.5720 0.0016 35 1 5.6641 -1.4137 1.7778 36 1 7.1726 -3.3519 1.7654 37 1 8.8492 -3.6194 -0.0039 38 1 9.3379 -0.2795 -3.7415 39 1 9.6009 2.4460 -4.4712 40 1 7.1722 2.0547 -0.0078 41 1 5.6616 3.9945 0.0005 42 1 2.7377 4.2905 -1.0146 43 1 2.0392 3.7448 0.5290 44 1 3.4488 4.8319 0.5248 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244441704.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:33 Heat of formation + Delta-G solvation = 25.432172 kcal Electronic energy + Delta-G solvation = -26747.048765 eV Core-core repulsion = 23208.084735 eV Total energy + Delta-G solvation = -3538.964030 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.05959 -39.50072 -37.25082 -35.75458 -33.64300 -32.74769 -31.51649 -30.32775 -29.33690 -28.48893 -27.82591 -25.93423 -24.53950 -23.82703 -21.91413 -21.38136 -20.42879 -20.35046 -19.42996 -17.85347 -16.39822 -15.91802 -15.79382 -15.61867 -15.21374 -14.97512 -14.39006 -14.32632 -13.68756 -13.57456 -13.41210 -13.15248 -12.93011 -12.66056 -12.56330 -12.53305 -12.49801 -11.93390 -11.64269 -11.52496 -11.32133 -11.22728 -11.11281 -10.93873 -10.77687 -10.71221 -10.53900 -10.39986 -10.21423 -9.70709 -9.66890 -9.18757 -8.51470 -8.02624 -7.48537 -7.09854 -6.45773 -6.44852 -3.95934 1.61560 2.05174 2.30930 2.59753 3.11979 3.20815 3.27935 3.48465 4.11916 4.23077 4.31200 4.49909 4.78322 4.97199 5.02495 5.20203 5.30331 5.33785 5.48864 5.53393 5.58354 5.67412 5.73854 5.79050 5.88167 5.92775 5.97356 6.02617 6.04855 6.08138 6.17483 6.31548 6.42895 6.56182 6.64795 6.73167 6.87713 7.07823 7.14388 7.16417 7.24476 7.30039 7.40110 7.51353 7.63478 7.75263 7.86121 8.03927 8.34277 8.68713 9.01366 9.15792 9.21310 10.56720 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.009354 B = 0.006059 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2992.557532 B = 4619.980051 C = 6807.936388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.318 6.318 4 C 0.114 3.886 5 C -0.192 4.192 6 C 0.011 3.989 7 C 0.001 3.999 8 C -0.171 4.171 9 C -0.118 4.118 10 C -0.148 4.148 11 C 0.084 3.916 12 N -0.591 5.591 13 H 0.394 0.606 14 C -0.077 4.077 15 C 0.026 3.974 16 C -0.419 4.419 17 H 0.079 0.921 18 C 0.062 3.938 19 N -0.837 5.837 20 Si 0.900 3.100 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.264 1.264 24 C -0.109 4.109 25 C -0.094 4.094 26 C -0.093 4.093 27 C -0.126 4.126 28 C -0.099 4.099 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.122 0.878 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.175 0.825 39 H 0.270 0.730 40 H 0.130 0.870 41 H 0.123 0.877 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.857 -2.441 6.732 11.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.021 4.021 3 O -0.233 6.233 4 C 0.069 3.931 5 C -0.211 4.211 6 C 0.010 3.990 7 C 0.000 4.000 8 C -0.191 4.191 9 C -0.137 4.137 10 C -0.170 4.170 11 C -0.027 4.027 12 N -0.192 5.192 13 H 0.227 0.773 14 C -0.201 4.201 15 C 0.021 3.979 16 C -0.452 4.452 17 H 0.097 0.903 18 C -0.148 4.148 19 N -0.468 5.468 20 Si 0.726 3.274 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.188 1.188 24 C -0.116 4.116 25 C -0.113 4.113 26 C -0.111 4.111 27 C -0.127 4.127 28 C -0.155 4.155 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.140 0.860 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.119 0.881 38 H 0.192 0.808 39 H 0.081 0.919 40 H 0.147 0.853 41 H 0.141 0.859 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.753 -2.177 6.460 11.094 hybrid contribution 0.361 0.127 -0.557 0.676 sum -8.391 -2.050 5.903 10.462 Atomic orbital electron populations 1.21750 0.93259 1.02467 1.03161 1.22689 0.95280 0.82723 1.01447 1.85986 1.19475 1.28433 1.89412 1.18512 0.81652 0.93477 0.99438 1.21168 0.93360 0.97468 1.09083 1.18526 0.91408 0.93019 0.96009 1.18052 0.94554 0.93041 0.94326 1.20560 1.02563 0.95943 1.00072 1.20304 0.97009 0.98126 0.98245 1.19845 1.02251 0.98923 0.95945 1.18136 0.95143 0.97835 0.91551 1.41455 1.31699 1.23623 1.22463 0.77250 1.22712 1.07490 0.88668 1.01246 1.17997 0.95707 0.93892 0.90337 1.18817 1.01567 1.00862 1.23954 0.90339 1.25573 0.94379 0.99254 0.95566 1.69692 1.10737 1.36747 1.29654 0.86400 0.80451 0.82321 0.78197 1.19787 1.20810 1.18804 1.19431 0.97522 0.97401 0.97269 1.21147 1.00415 0.90973 0.98716 1.20731 0.91522 0.98950 0.99944 1.19127 0.94147 0.92107 1.07325 1.20533 0.98312 0.94952 1.01741 0.90717 0.91814 0.91708 0.92121 0.92330 0.86008 0.87597 0.87398 0.88099 0.80803 0.91900 0.85254 0.85948 0.91977 0.91776 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.28 37.16 0.38 -1.03 16 2 C 0.05 0.67 5.46 37.16 0.20 0.88 16 3 O -0.32 -5.01 9.17 -19.45 -0.18 -5.19 16 4 C 0.11 2.01 6.65 -39.27 -0.26 1.75 16 5 C -0.19 -3.55 8.62 -39.07 -0.34 -3.89 16 6 C 0.01 0.22 4.59 -104.94 -0.48 -0.26 16 7 C 0.00 0.02 5.41 -104.73 -0.57 -0.55 16 8 C -0.17 -3.22 9.62 -39.21 -0.38 -3.60 16 9 C -0.12 -2.07 10.00 -39.62 -0.40 -2.47 16 10 C -0.15 -2.77 10.06 -39.33 -0.40 -3.17 16 11 C 0.08 1.85 7.23 -83.91 -0.61 1.24 16 12 N -0.59 -12.58 5.99 -9.81 -0.06 -12.64 16 13 H 0.39 6.84 8.96 -40.82 -0.37 6.48 16 14 C -0.08 -1.91 10.77 -15.61 -0.17 -2.08 16 15 C 0.03 0.68 5.96 -104.83 -0.63 0.05 16 16 C -0.42 -11.05 7.58 -38.01 -0.29 -11.34 16 17 H 0.08 2.08 5.58 -52.49 -0.29 1.78 16 18 C 0.06 1.60 5.47 -17.33 -0.09 1.50 16 19 N -0.84 -21.79 10.80 55.54 0.60 -21.19 16 20 Si 0.90 19.87 29.56 -169.99 -5.02 14.85 16 21 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 23 H -0.26 -5.88 7.11 56.52 0.40 -5.47 16 24 C -0.11 -2.62 6.07 -104.64 -0.64 -3.25 16 25 C -0.09 -1.92 6.72 -39.21 -0.26 -2.19 16 26 C -0.09 -1.70 9.68 -39.65 -0.38 -2.08 16 27 C -0.13 -2.20 5.90 -104.40 -0.62 -2.82 16 28 C -0.10 -1.41 9.78 36.01 0.35 -1.05 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.77 7.66 -51.93 -0.40 0.38 16 33 H 0.06 0.68 7.66 -51.93 -0.40 0.29 16 34 H 0.12 2.06 6.29 -52.49 -0.33 1.73 16 35 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 36 H 0.11 1.55 8.06 -52.48 -0.42 1.12 16 37 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.18 4.44 6.36 -52.48 -0.33 4.10 16 39 H 0.27 6.59 8.30 -40.82 -0.34 6.25 16 40 H 0.13 2.81 7.84 -52.49 -0.41 2.40 16 41 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 0.87 7.53 -51.93 -0.39 0.47 16 44 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 LS Contribution 361.76 15.07 5.45 5.45 Total: -1.00 -28.85 361.76 -10.63 -39.48 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -5.86 Total: 13.61 kcal Atomic # 6 Polarization: -28.80 SS G_CDS: -5.56 Total: -34.36 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 0.54 Total: -33.84 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.18 Total: -5.19 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.85 -10.63 -39.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244441704.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.908 kcal (2) G-P(sol) polarization free energy of solvation -28.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds