Wall clock time and date at job start Tue Mar 31 2020 12:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42899 * 109.46952 * 2 1 4 4 C 1.35908 * 116.99709 * 179.97438 * 3 2 1 5 5 C 1.38524 * 119.99130 * 359.97438 * 4 3 2 6 6 C 1.39329 * 119.81035 * 179.72192 * 5 4 3 7 7 C 1.48204 * 120.10195 * 180.30463 * 6 5 4 8 8 C 1.39166 * 120.28019 * 303.41967 * 7 6 5 9 9 C 1.38319 * 120.10581 * 180.02562 * 8 7 6 10 10 C 1.38044 * 120.77448 * 0.02562 * 9 8 7 11 11 C 1.39118 * 120.23283 * 359.97438 * 10 9 8 12 12 N 1.38182 * 132.74006 * 180.02562 * 11 10 9 13 13 H 0.96998 * 124.70423 * 359.94846 * 12 11 10 14 14 C 1.35600 * 110.59162 * 179.22002 * 12 11 10 15 15 C 1.38986 * 109.24964 * 0.68291 * 14 12 11 16 16 C 1.40957 * 126.93348 * 179.46074 * 15 14 12 17 17 H 1.07996 * 120.00421 * 158.29749 * 16 15 14 18 18 C 1.39684 * 119.99823 * 338.29862 * 16 15 14 19 19 N 1.31080 * 120.00201 * 0.02562 * 18 16 15 20 20 Si 1.86810 * 120.00171 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.46928 * 89.99867 * 20 18 16 22 22 H 1.48499 * 109.46909 * 210.00026 * 20 18 16 23 23 H 1.48503 * 109.46908 * 329.99814 * 20 18 16 24 24 C 1.40189 * 120.28448 * 123.14844 * 7 6 5 25 25 C 1.39469 * 119.79646 * 0.28189 * 6 5 4 26 26 C 1.38010 * 119.97995 * 0.02562 * 25 6 5 27 27 C 1.38267 * 120.18547 * 359.97438 * 26 25 6 28 28 C 1.50704 * 119.89236 * 180.02562 * 27 26 25 29 29 H 1.08995 * 109.46973 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47159 * 300.00000 * 1 2 3 31 31 H 1.09001 * 109.46973 * 59.99913 * 1 2 3 32 32 H 1.08999 * 109.46889 * 239.99540 * 2 1 3 33 33 H 1.08997 * 109.46551 * 119.99877 * 2 1 3 34 34 H 1.08002 * 120.09194 * 0.02562 * 5 4 3 35 35 H 1.08003 * 119.94676 * 0.02801 * 8 7 6 36 36 H 1.08005 * 119.61565 * 179.97438 * 9 8 7 37 37 H 1.07994 * 119.88220 * 179.97438 * 10 9 8 38 38 H 1.08004 * 125.37289 * 180.08507 * 14 12 11 39 39 H 0.97001 * 120.00236 * 179.97438 * 19 18 16 40 40 H 1.08001 * 120.01465 * 179.97438 * 25 6 5 41 41 H 1.07992 * 119.90349 * 180.02562 * 26 25 6 42 42 H 1.09007 * 109.47169 * 90.00240 * 28 27 26 43 43 H 1.09000 * 109.46741 * 209.99521 * 28 27 26 44 44 H 1.08998 * 109.47186 * 330.00246 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5253 0.0005 5 6 4.1974 0.4266 0.0016 6 6 5.5781 0.6135 -0.0037 7 6 6.4866 -0.5574 -0.0094 8 6 6.3979 -1.5193 0.9924 9 6 7.2480 -2.6104 0.9838 10 6 8.1925 -2.7621 -0.0115 11 6 8.3013 -1.8145 -1.0242 12 7 9.1318 -1.7079 -2.1235 13 1 9.8221 -2.3477 -2.3583 14 6 8.8373 -0.5933 -2.8374 15 6 7.7986 0.0886 -2.2146 16 6 7.2075 1.2976 -2.6340 17 1 6.2131 1.5564 -2.3015 18 6 7.9079 2.1609 -3.4796 19 7 9.1147 1.8467 -3.8837 20 14 7.1244 3.7629 -4.0360 21 1 7.4584 4.8393 -3.0692 22 1 7.6416 4.1264 -5.3797 23 1 5.6502 3.5963 -4.1015 24 6 7.4388 -0.7084 -1.0272 25 6 6.1025 1.9058 -0.0041 26 6 5.2541 2.9944 0.0013 27 6 3.8841 2.8080 0.0066 28 6 2.9638 4.0014 0.0119 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.7860 -0.5720 0.0016 35 1 5.6641 -1.4137 1.7778 36 1 7.1726 -3.3519 1.7654 37 1 8.8492 -3.6194 -0.0039 38 1 9.3379 -0.2795 -3.7415 39 1 9.6009 2.4460 -4.4712 40 1 7.1722 2.0547 -0.0078 41 1 5.6616 3.9945 0.0005 42 1 2.7377 4.2905 -1.0146 43 1 2.0392 3.7448 0.5290 44 1 3.4488 4.8319 0.5248 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244441704.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:32 Heat of formation + Delta-G solvation = 12.439930 kcal Electronic energy + Delta-G solvation = -26747.612151 eV Core-core repulsion = 23208.084735 eV Total energy + Delta-G solvation = -3539.527416 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.59733 -40.93639 -38.59814 -37.30335 -35.41633 -34.22609 -32.52706 -31.93983 -30.70426 -30.05989 -29.50420 -27.41660 -26.26475 -24.94077 -23.41860 -22.71155 -21.98830 -21.80361 -21.20222 -19.30983 -17.94936 -17.60567 -17.08330 -16.99571 -16.76980 -16.41477 -16.05127 -15.85333 -15.08518 -14.91765 -14.82222 -14.59842 -14.37468 -14.29488 -14.06279 -13.54684 -13.36217 -13.19059 -13.15904 -13.10303 -12.90880 -12.67585 -12.54589 -12.50135 -12.28529 -12.08763 -11.97524 -11.79676 -11.74989 -11.38134 -11.31220 -11.02494 -10.11592 -9.52303 -8.95093 -8.73759 -8.35996 -8.18581 -5.90321 0.11644 0.59834 0.79465 1.02539 1.35952 1.39047 1.50608 2.27698 2.33103 2.37240 2.83230 2.89472 3.16472 3.63215 3.78300 3.94383 4.08546 4.15530 4.20399 4.29998 4.38003 4.42205 4.45181 4.50918 4.62388 4.65795 4.81442 4.84607 4.87926 4.93700 4.96832 4.98091 5.04014 5.19284 5.24723 5.35381 5.37694 5.43188 5.50796 5.61918 5.67029 5.76443 5.82866 5.93455 5.99610 6.07342 6.28733 6.54722 6.57558 6.83747 7.20863 7.25636 7.40226 8.67276 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.009354 B = 0.006059 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2992.557532 B = 4619.980051 C = 6807.936388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.043 3.957 3 O -0.321 6.321 4 C 0.113 3.887 5 C -0.196 4.196 6 C -0.008 4.008 7 C -0.019 4.019 8 C -0.166 4.166 9 C -0.104 4.104 10 C -0.148 4.148 11 C 0.073 3.927 12 N -0.586 5.586 13 H 0.411 0.589 14 C -0.089 4.089 15 C -0.011 4.011 16 C -0.435 4.435 17 H 0.068 0.932 18 C 0.022 3.978 19 N -0.864 5.864 20 Si 0.956 3.044 21 H -0.264 1.264 22 H -0.275 1.275 23 H -0.268 1.268 24 C -0.147 4.147 25 C -0.113 4.113 26 C -0.097 4.097 27 C -0.133 4.133 28 C -0.095 4.095 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.135 0.865 35 H 0.131 0.869 36 H 0.154 0.846 37 H 0.136 0.864 38 H 0.160 0.840 39 H 0.273 0.727 40 H 0.101 0.899 41 H 0.139 0.861 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.751 -3.359 8.530 14.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.032 4.032 3 O -0.236 6.236 4 C 0.069 3.931 5 C -0.215 4.215 6 C -0.008 4.008 7 C -0.019 4.019 8 C -0.185 4.185 9 C -0.123 4.123 10 C -0.169 4.169 11 C -0.037 4.037 12 N -0.190 5.190 13 H 0.247 0.753 14 C -0.213 4.213 15 C -0.017 4.017 16 C -0.469 4.469 17 H 0.086 0.914 18 C -0.185 4.185 19 N -0.497 5.497 20 Si 0.780 3.220 21 H -0.189 1.189 22 H -0.200 1.200 23 H -0.192 1.192 24 C -0.154 4.154 25 C -0.132 4.132 26 C -0.115 4.115 27 C -0.133 4.133 28 C -0.152 4.152 29 H 0.117 0.883 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.152 0.848 35 H 0.149 0.851 36 H 0.172 0.828 37 H 0.154 0.846 38 H 0.177 0.823 39 H 0.083 0.917 40 H 0.119 0.881 41 H 0.157 0.843 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.643 -3.126 8.271 13.837 hybrid contribution 0.861 0.257 -0.967 1.320 sum -9.782 -2.869 7.304 12.541 Atomic orbital electron populations 1.21768 0.90738 1.04123 1.03348 1.23016 0.97269 0.81261 1.01618 1.85999 1.18075 1.30542 1.88983 1.18656 0.82579 0.93436 0.98477 1.21273 0.92632 0.98505 1.09074 1.18617 0.92252 0.92778 0.97165 1.18361 0.94638 0.94289 0.94655 1.20961 1.02840 0.95339 0.99401 1.20860 0.95057 0.98050 0.98346 1.20287 1.02849 0.99000 0.94791 1.18570 0.94780 0.98188 0.92187 1.41264 1.32323 1.23186 1.22222 0.75275 1.22465 1.07512 0.90037 1.01323 1.18364 0.96786 0.94618 0.91915 1.18886 1.01403 1.01758 1.24819 0.91388 1.26239 0.94819 1.01886 0.95575 1.69775 1.11651 1.37767 1.30473 0.85550 0.79213 0.79120 0.78130 1.18896 1.20011 1.19212 1.19683 0.99547 0.98303 0.97853 1.20998 0.99318 0.92116 1.00738 1.20932 0.91976 0.99102 0.99500 1.19518 0.94239 0.93410 1.06154 1.20577 0.98085 0.94166 1.02336 0.88326 0.91194 0.91936 0.92750 0.91354 0.84765 0.85106 0.82834 0.84610 0.82268 0.91671 0.88063 0.84303 0.91656 0.90886 0.90236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 10.28 71.98 0.74 -1.59 16 2 C 0.04 1.00 5.46 71.98 0.39 1.39 16 3 O -0.32 -9.61 9.17 -92.52 -0.85 -10.46 16 4 C 0.11 3.93 6.65 22.47 0.15 4.08 16 5 C -0.20 -7.22 8.62 22.60 0.19 -7.03 16 6 C -0.01 -0.33 4.59 -20.07 -0.09 -0.42 16 7 C -0.02 -0.82 5.41 -19.93 -0.11 -0.93 16 8 C -0.17 -5.87 9.62 22.51 0.22 -5.66 16 9 C -0.10 -3.27 10.00 22.24 0.22 -3.05 16 10 C -0.15 -5.14 10.06 22.44 0.23 -4.91 16 11 C 0.07 3.19 7.23 38.85 0.28 3.47 16 12 N -0.59 -25.44 5.99 -184.94 -1.11 -26.54 16 13 H 0.41 14.33 8.96 -92.71 -0.83 13.50 16 14 C -0.09 -4.61 10.77 84.29 0.91 -3.70 16 15 C -0.01 -0.62 5.96 -20.00 -0.12 -0.74 16 16 C -0.44 -24.21 7.58 23.29 0.18 -24.03 16 17 H 0.07 3.81 5.58 -2.91 -0.02 3.79 16 18 C 0.02 1.16 5.47 85.15 0.47 1.62 16 19 N -0.86 -47.08 10.80 21.79 0.24 -46.84 16 20 Si 0.96 41.98 29.56 68.60 2.03 44.01 16 21 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 22 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 24 C -0.15 -7.26 6.07 -19.88 -0.12 -7.38 16 25 C -0.11 -4.82 6.72 22.51 0.15 -4.67 16 26 C -0.10 -3.58 9.68 22.22 0.22 -3.36 16 27 C -0.13 -4.51 5.90 -19.72 -0.12 -4.63 16 28 C -0.10 -2.52 9.78 71.24 0.70 -1.82 16 29 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 1.32 7.66 -2.39 -0.02 1.30 16 33 H 0.07 1.44 7.66 -2.39 -0.02 1.42 16 34 H 0.13 4.43 6.29 -2.91 -0.02 4.41 16 35 H 0.13 3.94 8.06 -2.91 -0.02 3.91 16 36 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 37 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 38 H 0.16 8.64 6.36 -2.91 -0.02 8.63 16 39 H 0.27 13.85 8.30 -92.71 -0.77 13.08 16 40 H 0.10 4.77 7.84 -2.91 -0.02 4.74 16 41 H 0.14 4.47 8.06 -2.91 -0.02 4.44 16 42 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 43 H 0.07 1.80 7.53 -2.39 -0.02 1.78 16 44 H 0.08 1.78 8.08 -2.39 -0.02 1.76 16 Total: -1.00 -65.71 361.76 4.99 -60.72 By element: Atomic # 1 Polarization: 42.27 SS G_CDS: 0.20 Total: 42.47 kcal Atomic # 6 Polarization: -67.84 SS G_CDS: 4.48 Total: -63.36 kcal Atomic # 7 Polarization: -72.52 SS G_CDS: -0.87 Total: -73.39 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -0.85 Total: -10.46 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -65.71 4.99 -60.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244441704.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.164 kcal (2) G-P(sol) polarization free energy of solvation -65.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds