Wall clock time and date at job start Tue Mar 31 2020 12:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42895 * 109.46845 * 2 1 4 4 C 1.35911 * 117.00167 * 179.97438 * 3 2 1 5 5 C 1.38852 * 119.98975 * 0.02562 * 4 3 2 6 6 C 1.38217 * 120.21068 * 179.97438 * 5 4 3 7 7 C 1.38046 * 120.18625 * 359.77060 * 6 5 4 8 8 C 1.50703 * 120.01014 * 180.24986 * 7 6 5 9 9 C 1.39437 * 119.97978 * 0.48621 * 7 6 5 10 10 C 1.48203 * 120.10308 * 179.76597 * 9 7 6 11 11 C 1.39165 * 120.28092 * 244.72510 * 10 9 7 12 12 C 1.38323 * 120.10423 * 179.97438 * 11 10 9 13 13 C 1.38038 * 120.77557 * 0.04894 * 12 11 10 14 14 C 1.39117 * 120.23282 * 359.94816 * 13 12 11 15 15 N 1.38185 * 132.73913 * 180.02562 * 14 13 12 16 16 H 0.97004 * 124.70084 * 0.02562 * 15 14 13 17 17 C 1.35590 * 110.59651 * 179.97438 * 15 14 13 18 18 C 1.38987 * 109.24820 * 359.97438 * 17 15 14 19 19 C 1.40962 * 126.93208 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00110 * 197.88456 * 19 18 17 21 21 C 1.39696 * 119.99514 * 17.87578 * 19 18 17 22 22 N 1.31074 * 119.99946 * 8.77731 * 21 19 18 23 23 Si 1.86800 * 119.99633 * 188.77379 * 21 19 18 24 24 H 1.48498 * 109.47097 * 94.99581 * 23 21 19 25 25 H 1.48502 * 109.46857 * 214.99176 * 23 21 19 26 26 H 1.48493 * 109.47365 * 334.99545 * 23 21 19 27 27 C 1.40188 * 120.28364 * 64.72312 * 10 9 7 28 28 C 1.38474 * 119.99435 * 180.02562 * 4 3 2 29 29 H 1.08990 * 109.47267 * 300.00062 * 1 2 3 30 30 H 1.08995 * 109.46740 * 60.00525 * 1 2 3 31 31 H 1.09008 * 109.46722 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47713 * 239.99662 * 2 1 3 33 33 H 1.09003 * 109.47084 * 119.99564 * 2 1 3 34 34 H 1.08000 * 119.89183 * 0.02562 * 5 4 3 35 35 H 1.08000 * 119.90709 * 180.02562 * 6 5 4 36 36 H 1.08997 * 109.47464 * 270.23494 * 8 7 6 37 37 H 1.08997 * 109.46804 * 30.23717 * 8 7 6 38 38 H 1.08999 * 109.46680 * 150.23359 * 8 7 6 39 39 H 1.07998 * 119.94382 * 0.02562 * 11 10 9 40 40 H 1.08003 * 119.61112 * 180.02562 * 12 11 10 41 41 H 1.07998 * 119.88219 * 179.97438 * 13 12 11 42 42 H 1.08003 * 125.37334 * 180.26270 * 17 15 14 43 43 H 0.97003 * 119.99878 * 179.97438 * 22 21 19 44 44 H 1.07999 * 120.09409 * 0.02562 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1993 0.4242 0.0005 6 6 5.5703 0.6001 0.0005 7 6 6.1069 1.8720 -0.0042 8 6 7.6022 2.0592 -0.0099 9 6 5.2649 2.9835 0.0012 10 6 5.8381 4.3502 0.0014 11 6 5.6407 5.1938 1.0905 12 6 6.1777 6.4685 1.0870 13 6 6.9126 6.9224 0.0102 14 6 7.1242 6.0985 -1.0906 15 7 7.8026 6.2795 -2.2808 16 1 8.2706 7.0913 -2.5318 17 6 7.7245 5.1647 -3.0487 18 6 6.9819 4.1988 -2.3798 19 6 6.6704 2.9025 -2.8377 20 1 5.8639 2.3479 -2.3813 21 6 7.4048 2.3354 -3.8820 22 7 8.4872 2.9305 -4.3206 23 14 6.8442 0.7290 -4.6531 24 1 6.0254 1.0175 -5.8579 25 1 8.0313 -0.0740 -5.0421 26 1 6.0305 -0.0334 -3.6726 27 6 6.5837 4.8042 -1.0955 28 6 3.8827 2.8051 0.0011 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.7846 -0.5730 -0.0003 35 1 6.2235 -0.2599 0.0001 36 1 7.9669 2.1025 1.0164 37 1 8.0712 1.2222 -0.5271 38 1 7.8501 2.9883 -0.5230 39 1 5.0680 4.8523 1.9400 40 1 6.0200 7.1164 1.9366 41 1 7.3249 7.9204 0.0226 42 1 8.1727 5.0446 -4.0239 43 1 8.9973 2.5365 -5.0455 44 1 3.2261 3.6626 0.0015 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244872392.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:16 Heat of formation + Delta-G solvation = 29.512306 kcal Electronic energy + Delta-G solvation = -26986.898490 eV Core-core repulsion = 23448.111388 eV Total energy + Delta-G solvation = -3538.787102 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.09374 -39.44449 -37.47041 -35.63796 -33.52076 -32.27204 -31.76456 -30.59317 -29.53999 -28.19164 -27.62978 -25.59589 -24.70171 -23.70852 -22.26452 -21.18392 -20.50195 -20.17900 -19.34233 -17.94455 -16.45507 -15.91760 -15.77887 -15.53954 -15.28324 -14.71892 -14.48519 -14.32211 -13.74866 -13.43823 -13.24521 -13.01873 -12.92826 -12.87772 -12.56087 -12.50208 -12.40845 -11.82730 -11.39356 -11.27368 -11.24912 -11.16944 -11.10458 -10.96814 -10.80726 -10.62934 -10.42335 -10.34240 -10.16482 -9.70652 -9.58377 -9.16516 -8.47355 -8.05384 -7.38863 -7.07099 -6.51850 -6.46448 -3.91429 1.70182 2.04498 2.25801 2.61656 3.10820 3.20598 3.26767 3.47756 4.13382 4.21111 4.30356 4.52543 4.78431 4.93090 4.99092 5.22312 5.29037 5.35480 5.51427 5.55816 5.58957 5.71489 5.75918 5.83308 5.89297 5.97540 6.01034 6.08593 6.19637 6.41975 6.44578 6.48062 6.55539 6.68744 6.79074 6.80889 6.94895 7.07103 7.15262 7.21179 7.31224 7.39822 7.44511 7.52114 7.66872 7.75410 7.86583 8.05385 8.36014 8.70169 9.02581 9.16469 9.22386 10.55754 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.009833 B = 0.006000 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2846.832137 B = 4665.790725 C = 6610.649090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.320 6.320 4 C 0.110 3.890 5 C -0.211 4.211 6 C -0.090 4.090 7 C -0.067 4.067 8 C -0.112 4.112 9 C 0.017 3.983 10 C 0.006 3.994 11 C -0.171 4.171 12 C -0.116 4.116 13 C -0.149 4.149 14 C 0.084 3.916 15 N -0.590 5.590 16 H 0.394 0.606 17 C -0.084 4.084 18 C 0.031 3.969 19 C -0.413 4.413 20 H 0.077 0.923 21 C 0.064 3.936 22 N -0.833 5.833 23 Si 0.896 3.104 24 H -0.275 1.275 25 H -0.282 1.282 26 H -0.263 1.263 27 C -0.109 4.109 28 C -0.136 4.136 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.048 0.952 37 H 0.057 0.943 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.101 0.899 42 H 0.172 0.828 43 H 0.270 0.730 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.588 -2.579 7.319 10.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.235 6.235 4 C 0.066 3.934 5 C -0.229 4.229 6 C -0.108 4.108 7 C -0.067 4.067 8 C -0.168 4.168 9 C 0.017 3.983 10 C 0.005 3.995 11 C -0.191 4.191 12 C -0.135 4.135 13 C -0.171 4.171 14 C -0.027 4.027 15 N -0.191 5.191 16 H 0.227 0.773 17 C -0.208 4.208 18 C 0.026 3.974 19 C -0.446 4.446 20 H 0.095 0.905 21 C -0.146 4.146 22 N -0.463 5.463 23 Si 0.722 3.278 24 H -0.201 1.201 25 H -0.208 1.208 26 H -0.187 1.187 27 C -0.116 4.116 28 C -0.155 4.155 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.115 0.885 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.119 0.881 42 H 0.189 0.811 43 H 0.081 0.919 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.489 -2.477 7.011 9.869 hybrid contribution 0.143 -0.712 -0.714 1.018 sum -6.346 -3.189 6.298 9.492 Atomic orbital electron populations 1.21759 0.93243 1.02406 1.03372 1.22662 0.95381 0.82803 1.01115 1.86022 1.19660 1.28380 1.89464 1.18700 0.81599 0.94010 0.99098 1.21052 0.94381 0.97229 1.10268 1.20665 0.93901 0.96714 0.99559 1.19780 0.96420 0.91528 0.99015 1.20870 0.90643 1.05148 1.00159 1.18408 0.91172 0.92583 0.96177 1.17944 0.96808 0.91290 0.93417 1.20556 1.05657 0.94487 0.98410 1.20303 0.99998 0.95843 0.97347 1.19840 1.05138 0.98452 0.93630 1.18120 0.99463 0.96125 0.88968 1.41413 1.47346 1.15291 1.15066 0.77272 1.22558 1.14145 0.85221 0.98901 1.17957 0.97424 0.93416 0.88635 1.18771 1.14039 0.98341 1.13489 0.90494 1.25551 0.93981 0.98384 0.96697 1.69734 1.13286 1.38986 1.24318 0.86452 0.78831 0.82489 0.80000 1.20111 1.20788 1.18699 1.19339 1.02196 0.94219 0.95828 1.20338 0.94218 0.94413 1.06519 0.91709 0.91590 0.90772 0.92331 0.92463 0.86476 0.86402 0.93322 0.92353 0.88500 0.87496 0.87390 0.88129 0.81120 0.91932 0.85720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.28 37.16 0.38 -1.04 16 2 C 0.06 0.68 5.46 37.16 0.20 0.88 16 3 O -0.32 -5.23 10.13 -19.46 -0.20 -5.43 16 4 C 0.11 1.99 6.68 -39.27 -0.26 1.73 16 5 C -0.21 -3.59 9.03 -39.36 -0.36 -3.94 16 6 C -0.09 -1.63 9.68 -39.66 -0.38 -2.02 16 7 C -0.07 -1.35 4.05 -104.24 -0.42 -1.77 16 8 C -0.11 -2.26 8.71 36.01 0.31 -1.94 16 9 C 0.02 0.35 4.20 -104.94 -0.44 -0.09 16 10 C 0.01 0.13 4.63 -104.73 -0.49 -0.36 16 11 C -0.17 -3.23 9.73 -39.21 -0.38 -3.61 16 12 C -0.12 -2.04 10.00 -39.62 -0.40 -2.43 16 13 C -0.15 -2.78 10.06 -39.33 -0.40 -3.17 16 14 C 0.08 1.82 7.23 -83.91 -0.61 1.22 16 15 N -0.59 -12.40 5.99 -9.81 -0.06 -12.46 16 16 H 0.39 6.78 8.96 -40.82 -0.37 6.41 16 17 C -0.08 -2.06 10.77 -15.61 -0.17 -2.22 16 18 C 0.03 0.79 4.96 -104.83 -0.52 0.27 16 19 C -0.41 -10.75 7.14 -38.01 -0.27 -11.02 16 20 H 0.08 2.04 5.63 -52.49 -0.30 1.74 16 21 C 0.06 1.63 5.43 -17.33 -0.09 1.54 16 22 N -0.83 -21.37 10.89 55.54 0.60 -20.77 16 23 Si 0.90 19.78 29.57 -169.99 -5.03 14.75 16 24 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 27 C -0.11 -2.56 4.77 -104.65 -0.50 -3.06 16 28 C -0.14 -2.66 9.68 -39.07 -0.38 -3.03 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 32 H 0.06 0.69 7.66 -51.93 -0.40 0.30 16 33 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 34 H 0.12 1.66 6.28 -52.49 -0.33 1.33 16 35 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 1.14 8.09 -51.93 -0.42 0.72 16 38 H 0.10 2.25 4.29 -51.93 -0.22 2.03 16 39 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 40 H 0.11 1.56 8.06 -52.48 -0.42 1.13 16 41 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.17 4.31 6.41 -52.48 -0.34 3.97 16 43 H 0.27 6.51 8.30 -40.82 -0.34 6.17 16 44 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 LS Contribution 356.51 15.07 5.37 5.37 Total: -1.00 -28.37 356.51 -10.17 -38.54 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -5.71 Total: 14.07 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: -5.16 Total: -34.09 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: 0.55 Total: -33.23 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: -0.20 Total: -5.43 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.75 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.37 -10.17 -38.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244872392.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.057 kcal (2) G-P(sol) polarization free energy of solvation -28.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds