Wall clock time and date at job start Tue Mar 31 2020 12:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42895 * 109.46845 * 2 1 4 4 C 1.35911 * 117.00167 * 179.97438 * 3 2 1 5 5 C 1.38852 * 119.98975 * 0.02562 * 4 3 2 6 6 C 1.38217 * 120.21068 * 179.97438 * 5 4 3 7 7 C 1.38046 * 120.18625 * 359.77060 * 6 5 4 8 8 C 1.50703 * 120.01014 * 180.24986 * 7 6 5 9 9 C 1.39437 * 119.97978 * 0.48621 * 7 6 5 10 10 C 1.48203 * 120.10308 * 179.76597 * 9 7 6 11 11 C 1.39165 * 120.28092 * 244.72510 * 10 9 7 12 12 C 1.38323 * 120.10423 * 179.97438 * 11 10 9 13 13 C 1.38038 * 120.77557 * 0.04894 * 12 11 10 14 14 C 1.39117 * 120.23282 * 359.94816 * 13 12 11 15 15 N 1.38185 * 132.73913 * 180.02562 * 14 13 12 16 16 H 0.97004 * 124.70084 * 0.02562 * 15 14 13 17 17 C 1.35590 * 110.59651 * 179.97438 * 15 14 13 18 18 C 1.38987 * 109.24820 * 359.97438 * 17 15 14 19 19 C 1.40962 * 126.93208 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00110 * 197.88456 * 19 18 17 21 21 C 1.39696 * 119.99514 * 17.87578 * 19 18 17 22 22 N 1.31074 * 119.99946 * 8.77731 * 21 19 18 23 23 Si 1.86800 * 119.99633 * 188.77379 * 21 19 18 24 24 H 1.48498 * 109.47097 * 94.99581 * 23 21 19 25 25 H 1.48502 * 109.46857 * 214.99176 * 23 21 19 26 26 H 1.48493 * 109.47365 * 334.99545 * 23 21 19 27 27 C 1.40188 * 120.28364 * 64.72312 * 10 9 7 28 28 C 1.38474 * 119.99435 * 180.02562 * 4 3 2 29 29 H 1.08990 * 109.47267 * 300.00062 * 1 2 3 30 30 H 1.08995 * 109.46740 * 60.00525 * 1 2 3 31 31 H 1.09008 * 109.46722 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47713 * 239.99662 * 2 1 3 33 33 H 1.09003 * 109.47084 * 119.99564 * 2 1 3 34 34 H 1.08000 * 119.89183 * 0.02562 * 5 4 3 35 35 H 1.08000 * 119.90709 * 180.02562 * 6 5 4 36 36 H 1.08997 * 109.47464 * 270.23494 * 8 7 6 37 37 H 1.08997 * 109.46804 * 30.23717 * 8 7 6 38 38 H 1.08999 * 109.46680 * 150.23359 * 8 7 6 39 39 H 1.07998 * 119.94382 * 0.02562 * 11 10 9 40 40 H 1.08003 * 119.61112 * 180.02562 * 12 11 10 41 41 H 1.07998 * 119.88219 * 179.97438 * 13 12 11 42 42 H 1.08003 * 125.37334 * 180.26270 * 17 15 14 43 43 H 0.97003 * 119.99878 * 179.97438 * 22 21 19 44 44 H 1.07999 * 120.09409 * 0.02562 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1993 0.4242 0.0005 6 6 5.5703 0.6001 0.0005 7 6 6.1069 1.8720 -0.0042 8 6 7.6022 2.0592 -0.0099 9 6 5.2649 2.9835 0.0012 10 6 5.8381 4.3502 0.0014 11 6 5.6407 5.1938 1.0905 12 6 6.1777 6.4685 1.0870 13 6 6.9126 6.9224 0.0102 14 6 7.1242 6.0985 -1.0906 15 7 7.8026 6.2795 -2.2808 16 1 8.2706 7.0913 -2.5318 17 6 7.7245 5.1647 -3.0487 18 6 6.9819 4.1988 -2.3798 19 6 6.6704 2.9025 -2.8377 20 1 5.8639 2.3479 -2.3813 21 6 7.4048 2.3354 -3.8820 22 7 8.4872 2.9305 -4.3206 23 14 6.8442 0.7290 -4.6531 24 1 6.0254 1.0175 -5.8579 25 1 8.0313 -0.0740 -5.0421 26 1 6.0305 -0.0334 -3.6726 27 6 6.5837 4.8042 -1.0955 28 6 3.8827 2.8051 0.0011 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.7846 -0.5730 -0.0003 35 1 6.2235 -0.2599 0.0001 36 1 7.9669 2.1025 1.0164 37 1 8.0712 1.2222 -0.5271 38 1 7.8501 2.9883 -0.5230 39 1 5.0680 4.8523 1.9400 40 1 6.0200 7.1164 1.9366 41 1 7.3249 7.9204 0.0226 42 1 8.1727 5.0446 -4.0239 43 1 8.9973 2.5365 -5.0455 44 1 3.2261 3.6626 0.0015 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244872392.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:14 Heat of formation + Delta-G solvation = 16.649121 kcal Electronic energy + Delta-G solvation = -26987.456280 eV Core-core repulsion = 23448.111388 eV Total energy + Delta-G solvation = -3539.344892 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -41.64337 -40.84445 -38.83721 -37.18978 -35.32466 -33.58303 -33.15851 -31.80224 -31.19703 -29.72822 -29.28758 -27.09892 -26.47137 -24.90065 -23.56096 -22.68384 -22.08378 -21.68699 -21.01096 -19.33923 -18.02420 -17.57458 -16.96595 -16.95063 -16.86405 -16.16169 -16.06575 -15.93511 -15.13825 -14.91587 -14.75780 -14.42782 -14.33659 -14.27831 -14.16909 -13.80541 -13.35086 -13.17114 -13.09118 -12.93173 -12.86542 -12.51844 -12.49709 -12.47208 -12.39123 -12.06420 -11.97229 -11.72332 -11.67258 -11.34319 -11.19082 -11.00235 -10.03689 -9.59344 -8.82297 -8.70017 -8.35040 -8.23792 -5.82538 0.21682 0.59811 0.75188 1.05330 1.35137 1.39989 1.50664 2.30175 2.33427 2.37878 2.84822 2.93241 3.18148 3.70287 3.86094 3.94586 4.09080 4.14189 4.21388 4.33558 4.35595 4.41156 4.47963 4.50593 4.66208 4.66821 4.83619 4.90669 4.91345 4.95101 4.97006 5.05852 5.16160 5.22429 5.30668 5.36307 5.44880 5.46169 5.50497 5.57468 5.68731 5.83560 5.87901 5.96126 6.03150 6.10476 6.32606 6.57547 6.61730 6.87908 7.24208 7.29835 7.44412 8.69092 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.009833 B = 0.006000 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2846.832137 B = 4665.790725 C = 6610.649090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.043 3.957 3 O -0.334 6.334 4 C 0.111 3.889 5 C -0.207 4.207 6 C -0.094 4.094 7 C -0.088 4.088 8 C -0.103 4.103 9 C 0.001 3.999 10 C -0.011 4.011 11 C -0.169 4.169 12 C -0.104 4.104 13 C -0.149 4.149 14 C 0.073 3.927 15 N -0.586 5.586 16 H 0.410 0.590 17 C -0.097 4.097 18 C 0.001 3.999 19 C -0.426 4.426 20 H 0.065 0.935 21 C 0.026 3.974 22 N -0.859 5.859 23 Si 0.950 3.050 24 H -0.276 1.276 25 H -0.274 1.274 26 H -0.262 1.262 27 C -0.139 4.139 28 C -0.155 4.155 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.102 0.898 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.150 0.850 35 H 0.139 0.861 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.128 0.872 40 H 0.151 0.849 41 H 0.134 0.866 42 H 0.157 0.843 43 H 0.273 0.727 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.953 -3.126 9.143 12.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.031 4.031 3 O -0.249 6.249 4 C 0.067 3.933 5 C -0.226 4.226 6 C -0.112 4.112 7 C -0.088 4.088 8 C -0.159 4.159 9 C 0.001 3.999 10 C -0.011 4.011 11 C -0.189 4.189 12 C -0.123 4.123 13 C -0.171 4.171 14 C -0.038 4.038 15 N -0.189 5.189 16 H 0.246 0.754 17 C -0.222 4.222 18 C -0.004 4.004 19 C -0.459 4.459 20 H 0.083 0.917 21 C -0.182 4.182 22 N -0.490 5.490 23 Si 0.774 3.226 24 H -0.201 1.201 25 H -0.199 1.199 26 H -0.186 1.186 27 C -0.146 4.146 28 C -0.173 4.173 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.121 0.879 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.167 0.833 35 H 0.157 0.843 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.146 0.854 40 H 0.169 0.831 41 H 0.152 0.848 42 H 0.174 0.826 43 H 0.083 0.917 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.859 -3.002 8.848 12.209 hybrid contribution 0.458 -0.482 -1.125 1.307 sum -7.401 -3.484 7.723 11.250 Atomic orbital electron populations 1.21794 0.91222 1.04195 1.03126 1.23058 0.97047 0.80981 1.02055 1.86024 1.18536 1.31204 1.89103 1.18776 0.82678 0.93765 0.98115 1.21366 0.93808 0.98470 1.08913 1.20957 0.94890 0.96608 0.98756 1.19859 0.96066 0.92432 1.00460 1.20718 0.91402 1.03234 1.00567 1.18493 0.91742 0.92585 0.97086 1.18212 0.96980 0.92282 0.93652 1.20936 1.05076 0.94795 0.98080 1.20821 0.97826 0.95594 0.98026 1.20257 1.04769 0.99512 0.92534 1.18547 0.99309 0.96229 0.89700 1.41227 1.47764 1.15158 1.14760 0.75376 1.22329 1.14451 0.86559 0.98858 1.18251 0.98332 0.93729 0.90114 1.18776 1.14086 0.98851 1.14194 0.91726 1.26158 0.94020 1.01006 0.96978 1.69810 1.14066 1.40227 1.24941 0.85631 0.78520 0.79451 0.78980 1.20126 1.19947 1.18628 1.19523 1.03813 0.95203 0.96012 1.20407 0.93930 0.95339 1.07643 0.91564 0.92250 0.87934 0.91960 0.90817 0.83291 0.84340 0.91743 0.92630 0.91737 0.85443 0.83090 0.84767 0.82623 0.91727 0.85954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 10.28 71.98 0.74 -1.64 16 2 C 0.04 0.94 5.46 71.98 0.39 1.33 16 3 O -0.33 -10.44 10.13 -92.55 -0.94 -11.37 16 4 C 0.11 3.93 6.68 22.47 0.15 4.08 16 5 C -0.21 -6.69 9.03 22.41 0.20 -6.49 16 6 C -0.09 -3.32 9.68 22.22 0.22 -3.10 16 7 C -0.09 -3.56 4.05 -19.62 -0.08 -3.64 16 8 C -0.10 -4.25 8.71 71.24 0.62 -3.62 16 9 C 0.00 0.05 4.20 -20.07 -0.08 -0.04 16 10 C -0.01 -0.46 4.63 -19.93 -0.09 -0.55 16 11 C -0.17 -6.11 9.73 22.51 0.22 -5.89 16 12 C -0.10 -3.32 10.00 22.24 0.22 -3.10 16 13 C -0.15 -5.20 10.06 22.43 0.23 -4.98 16 14 C 0.07 3.13 7.23 38.85 0.28 3.41 16 15 N -0.59 -25.06 5.99 -184.95 -1.11 -26.16 16 16 H 0.41 14.18 8.96 -92.71 -0.83 13.35 16 17 C -0.10 -4.96 10.77 84.29 0.91 -4.06 16 18 C 0.00 0.07 4.96 -20.00 -0.10 -0.03 16 19 C -0.43 -23.06 7.14 23.29 0.17 -22.89 16 20 H 0.06 3.56 5.63 -2.91 -0.02 3.55 16 21 C 0.03 1.35 5.43 85.16 0.46 1.82 16 22 N -0.86 -45.82 10.89 21.79 0.24 -45.58 16 23 Si 0.95 41.37 29.57 68.60 2.03 43.40 16 24 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 26 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 27 C -0.14 -6.67 4.77 -19.88 -0.09 -6.77 16 28 C -0.15 -6.06 9.68 22.60 0.22 -5.84 16 29 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.06 1.31 7.66 -2.39 -0.02 1.30 16 33 H 0.07 1.37 7.66 -2.39 -0.02 1.35 16 34 H 0.15 3.75 6.28 -2.91 -0.02 3.73 16 35 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 36 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.05 2.23 8.09 -2.39 -0.02 2.21 16 38 H 0.06 3.12 4.29 -2.39 -0.01 3.11 16 39 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16 40 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 41 H 0.13 3.74 8.06 -2.91 -0.02 3.72 16 42 H 0.16 8.32 6.41 -2.91 -0.02 8.30 16 43 H 0.27 13.58 8.30 -92.71 -0.77 12.81 16 44 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -64.00 356.51 5.00 -59.00 By element: Atomic # 1 Polarization: 42.52 SS G_CDS: 0.21 Total: 42.73 kcal Atomic # 6 Polarization: -66.58 SS G_CDS: 4.57 Total: -62.01 kcal Atomic # 7 Polarization: -70.87 SS G_CDS: -0.87 Total: -71.74 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: -0.94 Total: -11.37 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -64.00 5.00 -59.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244872392.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.646 kcal (2) G-P(sol) polarization free energy of solvation -63.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds