Wall clock time and date at job start Tue Mar 31 2020 12:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47035 * 2 1 4 4 C 1.46504 * 120.00052 * 90.00209 * 3 2 1 5 5 C 1.50696 * 109.47352 * 89.99668 * 4 3 2 6 6 H 1.07997 * 120.00037 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99985 * 180.02562 * 5 4 3 8 8 N 1.31523 * 119.99972 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00378 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47027 * 59.99854 * 9 7 5 11 11 H 1.48495 * 109.47675 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46946 * 300.00554 * 9 7 5 13 13 C 1.34773 * 120.00503 * 269.99926 * 3 2 1 14 14 O 1.21280 * 120.00601 * 179.97438 * 13 3 2 15 15 C 1.50708 * 119.99939 * 359.97438 * 13 3 2 16 16 C 1.52991 * 109.47423 * 180.02562 * 15 13 3 17 17 N 1.46494 * 109.47479 * 180.02562 * 16 15 13 18 18 C 1.34741 * 120.00729 * 180.02562 * 17 16 15 19 19 O 1.34283 * 119.99774 * 359.97438 * 18 17 16 20 20 C 1.41522 * 120.00761 * 179.97438 * 18 17 16 21 21 N 1.33551 * 120.01377 * 354.22725 * 20 18 17 22 22 C 1.30909 * 121.63132 * 179.69847 * 21 20 18 23 23 C 1.39490 * 121.49289 * 0.58532 * 22 21 20 24 24 C 1.36518 * 119.85616 * 359.70827 * 23 22 21 25 25 C 1.40993 * 118.46821 * 359.97438 * 24 23 22 26 26 O 1.22432 * 120.71040 * 179.97438 * 25 24 23 27 27 H 1.08995 * 109.47471 * 300.00013 * 1 2 3 28 28 H 1.09002 * 109.46935 * 60.00277 * 1 2 3 29 29 H 1.09005 * 109.46968 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47240 * 240.00449 * 2 1 3 31 31 H 1.08995 * 109.47268 * 120.00514 * 2 1 3 32 32 H 1.09010 * 109.46730 * 329.99405 * 4 3 2 33 33 H 1.08998 * 109.47277 * 210.00506 * 4 3 2 34 34 H 0.97001 * 119.99855 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.46793 * 300.00487 * 15 13 3 36 36 H 1.08997 * 109.46772 * 60.00042 * 15 13 3 37 37 H 1.09004 * 109.47523 * 300.00027 * 16 15 13 38 38 H 1.08996 * 109.47363 * 59.99754 * 16 15 13 39 39 H 0.97004 * 120.00043 * 359.97438 * 17 16 15 40 40 H 0.96699 * 116.99586 * 94.90369 * 19 18 17 41 41 H 1.08002 * 119.25127 * 180.28654 * 22 21 20 42 42 H 1.07996 * 120.07291 * 179.69122 * 23 22 21 43 43 H 1.08000 * 120.76668 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2688 5 6 3.6857 1.8350 1.7038 6 1 4.3428 1.2309 1.0959 7 6 4.1490 2.3896 2.8780 8 7 3.3486 3.1249 3.6186 9 14 5.9134 2.0967 3.4170 10 1 6.8406 2.6211 2.3823 11 1 6.1605 2.7956 4.7037 12 1 6.1417 0.6400 3.5937 13 6 2.2430 2.0166 -1.1671 14 8 2.6468 3.1602 -1.1671 15 6 1.9924 1.3061 -2.4723 16 6 2.3243 2.2432 -3.6352 17 7 2.0801 1.5528 -4.9039 18 6 2.3056 2.1876 -6.0708 19 8 2.7536 3.4535 -6.0708 20 6 2.0702 1.5204 -7.2965 21 7 1.7360 0.2274 -7.2998 22 6 1.5056 -0.4194 -8.4144 23 6 1.6098 0.2081 -9.6559 24 6 1.9532 1.5277 -9.7237 25 6 2.1941 2.2222 -8.5206 26 8 2.5051 3.4063 -8.5336 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.5816 1.6877 2.0284 33 1 2.0954 3.1410 1.1385 34 1 3.6747 3.5154 4.4445 35 1 2.6229 0.4188 -2.5298 36 1 0.9446 1.0115 -2.5303 37 1 1.6941 3.1308 -3.5779 38 1 3.3722 2.5375 -3.5770 39 1 1.7569 0.6382 -4.9040 40 1 3.7094 3.5808 -6.1439 41 1 1.2334 -1.4636 -8.3721 42 1 1.4194 -0.3487 -10.5614 43 1 2.0377 2.0283 -10.6770 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320051433.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:14 Heat of formation + Delta-G solvation = -57.342253 kcal Electronic energy + Delta-G solvation = -26247.789290 eV Core-core repulsion = 22294.386628 eV Total energy + Delta-G solvation = -3953.402662 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 3.25 seconds Orbital eigenvalues (eV) -41.02182 -39.62197 -39.02046 -37.13438 -36.22838 -35.51084 -33.12027 -32.73014 -31.31084 -30.26250 -29.48101 -27.38815 -25.63216 -24.12573 -23.18656 -22.60083 -22.28740 -22.02095 -19.12981 -18.62492 -18.06332 -17.09961 -16.69565 -16.48972 -16.24837 -16.12703 -15.62736 -15.45422 -15.16672 -14.53981 -14.40055 -14.17543 -14.02104 -13.58698 -13.21943 -13.11179 -12.75299 -12.63001 -12.39514 -12.36805 -12.17677 -12.02687 -11.98051 -11.70290 -11.30776 -11.06110 -10.97892 -10.81516 -10.63936 -10.57387 -10.25447 -9.79382 -9.71912 -9.23162 -8.89860 -8.54129 -7.88039 -7.52714 -6.15446 -4.21115 -0.14525 1.64037 2.14407 2.20597 3.10499 3.23597 3.27097 3.29088 3.31635 3.73342 4.01014 4.18436 4.34458 4.39408 4.69534 4.73048 4.81049 4.93849 5.04734 5.09656 5.12346 5.19108 5.26527 5.38159 5.47090 5.49328 5.59936 5.62281 5.84134 5.87533 6.07661 6.12348 6.19006 6.32419 6.44279 6.54291 6.88023 7.07550 7.28548 7.35222 7.79369 7.82653 8.09652 8.12394 8.18821 8.70929 8.86719 9.44351 10.92637 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020394 B = 0.002389 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.638616 B =11719.901366 C =12348.780320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.104 3.896 3 N -0.592 5.592 4 C 0.246 3.754 5 C -0.530 4.530 6 H 0.056 0.944 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.277 1.277 13 C 0.510 3.490 14 O -0.540 6.540 15 C -0.158 4.158 16 C 0.102 3.898 17 N -0.642 5.642 18 C 0.560 3.440 19 O -0.467 6.467 20 C -0.204 4.204 21 N -0.416 5.416 22 C 0.033 3.967 23 C -0.085 4.085 24 C -0.218 4.218 25 C 0.371 3.629 26 O -0.530 6.530 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.034 0.966 33 H 0.044 0.956 34 H 0.265 0.735 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.434 0.566 40 H 0.436 0.564 41 H 0.152 0.848 42 H 0.126 0.874 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.931 -10.204 -18.708 21.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.020 4.020 3 N -0.323 5.323 4 C 0.127 3.873 5 C -0.569 4.569 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.295 3.705 14 O -0.418 6.418 15 C -0.198 4.198 16 C -0.021 4.021 17 N -0.265 5.265 18 C 0.380 3.620 19 O -0.278 6.278 20 C -0.329 4.329 21 N -0.127 5.127 22 C -0.149 4.149 23 C -0.106 4.106 24 C -0.245 4.245 25 C 0.265 3.735 26 O -0.420 6.420 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.115 0.885 39 H 0.276 0.724 40 H 0.304 0.696 41 H 0.169 0.831 42 H 0.144 0.856 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.050 -8.830 -17.274 20.046 hybrid contribution 1.249 -0.471 -0.493 1.423 sum -3.801 -9.301 -17.767 20.411 Atomic orbital electron populations 1.22226 0.96588 1.01623 1.02392 1.21467 0.93632 0.84014 1.02888 1.48265 1.63053 1.13320 1.07696 1.19317 0.96432 0.93658 0.77875 1.21345 0.96800 1.32324 1.06433 0.92548 1.24939 0.97932 0.94830 0.96344 1.69917 1.35772 1.33144 1.14333 0.86549 0.84611 0.78283 0.77921 1.20172 1.21097 1.20229 1.19808 0.79098 0.86861 0.84716 1.90719 1.46040 1.17882 1.87129 1.21914 1.04436 0.99939 0.93561 1.21791 1.04500 0.96158 0.79609 1.45737 1.57822 1.17543 1.05416 1.19464 0.79062 0.78902 0.84582 1.83763 1.30948 1.18970 1.94129 1.19454 1.28181 0.93364 0.91939 1.66904 1.06160 1.07119 1.32469 1.22197 1.05501 0.99986 0.87224 1.22004 0.94280 0.95105 0.99163 1.22853 1.05710 0.95890 1.00057 1.17410 0.78500 0.88755 0.88817 1.90841 1.44969 1.16237 1.89990 0.91890 0.93133 0.91979 0.91696 0.89696 0.94850 0.93782 0.92532 0.88217 0.88298 0.88145 0.88536 0.72414 0.69555 0.83072 0.85596 0.85061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 10.24 37.16 0.38 -1.54 16 2 C 0.10 1.41 5.93 -4.04 -0.02 1.39 16 3 N -0.59 -10.97 2.46 -175.06 -0.43 -11.40 16 4 C 0.25 5.97 5.16 -5.19 -0.03 5.95 16 5 C -0.53 -14.18 9.39 -34.44 -0.32 -14.51 16 6 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 9 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 C 0.51 8.86 7.67 -10.98 -0.08 8.78 16 14 O -0.54 -11.83 15.56 5.56 0.09 -11.74 16 15 C -0.16 -1.65 4.37 -27.88 -0.12 -1.77 16 16 C 0.10 0.99 4.97 -4.05 -0.02 0.97 16 17 N -0.64 -5.29 5.53 -60.41 -0.33 -5.62 16 18 C 0.56 5.73 7.70 -15.02 -0.12 5.62 16 19 O -0.47 -4.69 10.63 -36.99 -0.39 -5.08 16 20 C -0.20 -2.49 6.61 -84.57 -0.56 -3.05 16 21 N -0.42 -4.55 9.41 -10.77 -0.10 -4.65 16 22 C 0.03 0.31 11.16 -17.48 -0.20 0.12 16 23 C -0.08 -0.77 10.04 -39.74 -0.40 -1.17 16 24 C -0.22 -2.56 10.09 -39.16 -0.40 -2.96 16 25 C 0.37 5.26 6.73 -37.24 -0.25 5.01 16 26 O -0.53 -8.94 15.88 -17.76 -0.28 -9.23 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.52 7.22 -51.93 -0.38 0.15 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.67 6.44 -51.93 -0.33 0.34 16 31 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 32 H 0.03 0.83 8.07 -51.92 -0.42 0.41 16 33 H 0.04 1.22 7.42 -51.93 -0.39 0.84 16 34 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.10 0.85 7.40 -51.93 -0.38 0.47 16 36 H 0.10 0.83 7.19 -51.93 -0.37 0.46 16 37 H 0.10 1.12 8.10 -51.93 -0.42 0.70 16 38 H 0.10 0.98 8.10 -51.93 -0.42 0.56 16 39 H 0.43 3.08 7.69 -40.82 -0.31 2.77 16 40 H 0.44 2.50 9.15 45.56 0.42 2.92 16 41 H 0.15 0.95 8.06 -52.49 -0.42 0.52 16 42 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 370.56 15.07 5.58 5.58 Total: -1.00 -36.54 370.56 -7.47 -44.01 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -5.09 Total: 2.57 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -2.23 Total: 4.43 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -0.13 Total: -46.53 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.59 Total: -26.05 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.54 -7.47 -44.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320051433.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.328 kcal (2) G-P(sol) polarization free energy of solvation -36.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.25 seconds