Wall clock time and date at job start Tue Mar 31 2020 12:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47035 * 2 1 4 4 C 1.46504 * 120.00052 * 90.00209 * 3 2 1 5 5 C 1.50696 * 109.47352 * 89.99668 * 4 3 2 6 6 H 1.07997 * 120.00037 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99985 * 180.02562 * 5 4 3 8 8 N 1.31523 * 119.99972 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00378 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47027 * 59.99854 * 9 7 5 11 11 H 1.48495 * 109.47675 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46946 * 300.00554 * 9 7 5 13 13 C 1.34773 * 120.00503 * 269.99926 * 3 2 1 14 14 O 1.21280 * 120.00601 * 179.97438 * 13 3 2 15 15 C 1.50708 * 119.99939 * 359.97438 * 13 3 2 16 16 C 1.52991 * 109.47423 * 180.02562 * 15 13 3 17 17 N 1.46494 * 109.47479 * 180.02562 * 16 15 13 18 18 C 1.34741 * 120.00729 * 180.02562 * 17 16 15 19 19 O 1.34283 * 119.99774 * 359.97438 * 18 17 16 20 20 C 1.41522 * 120.00761 * 179.97438 * 18 17 16 21 21 N 1.33551 * 120.01377 * 354.22725 * 20 18 17 22 22 C 1.30909 * 121.63132 * 179.69847 * 21 20 18 23 23 C 1.39490 * 121.49289 * 0.58532 * 22 21 20 24 24 C 1.36518 * 119.85616 * 359.70827 * 23 22 21 25 25 C 1.40993 * 118.46821 * 359.97438 * 24 23 22 26 26 O 1.22432 * 120.71040 * 179.97438 * 25 24 23 27 27 H 1.08995 * 109.47471 * 300.00013 * 1 2 3 28 28 H 1.09002 * 109.46935 * 60.00277 * 1 2 3 29 29 H 1.09005 * 109.46968 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47240 * 240.00449 * 2 1 3 31 31 H 1.08995 * 109.47268 * 120.00514 * 2 1 3 32 32 H 1.09010 * 109.46730 * 329.99405 * 4 3 2 33 33 H 1.08998 * 109.47277 * 210.00506 * 4 3 2 34 34 H 0.97001 * 119.99855 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.46793 * 300.00487 * 15 13 3 36 36 H 1.08997 * 109.46772 * 60.00042 * 15 13 3 37 37 H 1.09004 * 109.47523 * 300.00027 * 16 15 13 38 38 H 1.08996 * 109.47363 * 59.99754 * 16 15 13 39 39 H 0.97004 * 120.00043 * 359.97438 * 17 16 15 40 40 H 0.96699 * 116.99586 * 94.90369 * 19 18 17 41 41 H 1.08002 * 119.25127 * 180.28654 * 22 21 20 42 42 H 1.07996 * 120.07291 * 179.69122 * 23 22 21 43 43 H 1.08000 * 120.76668 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2688 5 6 3.6857 1.8350 1.7038 6 1 4.3428 1.2309 1.0959 7 6 4.1490 2.3896 2.8780 8 7 3.3486 3.1249 3.6186 9 14 5.9134 2.0967 3.4170 10 1 6.8406 2.6211 2.3823 11 1 6.1605 2.7956 4.7037 12 1 6.1417 0.6400 3.5937 13 6 2.2430 2.0166 -1.1671 14 8 2.6468 3.1602 -1.1671 15 6 1.9924 1.3061 -2.4723 16 6 2.3243 2.2432 -3.6352 17 7 2.0801 1.5528 -4.9039 18 6 2.3056 2.1876 -6.0708 19 8 2.7536 3.4535 -6.0708 20 6 2.0702 1.5204 -7.2965 21 7 1.7360 0.2274 -7.2998 22 6 1.5056 -0.4194 -8.4144 23 6 1.6098 0.2081 -9.6559 24 6 1.9532 1.5277 -9.7237 25 6 2.1941 2.2222 -8.5206 26 8 2.5051 3.4063 -8.5336 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.5816 1.6877 2.0284 33 1 2.0954 3.1410 1.1385 34 1 3.6747 3.5154 4.4445 35 1 2.6229 0.4188 -2.5298 36 1 0.9446 1.0115 -2.5303 37 1 1.6941 3.1308 -3.5779 38 1 3.3722 2.5375 -3.5770 39 1 1.7569 0.6382 -4.9040 40 1 3.7094 3.5808 -6.1439 41 1 1.2334 -1.4636 -8.3721 42 1 1.4194 -0.3487 -10.5614 43 1 2.0377 2.0283 -10.6770 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320051433.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:08 Heat of formation + Delta-G solvation = -85.400642 kcal Electronic energy + Delta-G solvation = -26249.005993 eV Core-core repulsion = 22294.386628 eV Total energy + Delta-G solvation = -3954.619365 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 5.01 seconds Orbital eigenvalues (eV) -41.85341 -40.88189 -39.94843 -38.04138 -37.20825 -36.84374 -34.94716 -33.72057 -32.28966 -31.53141 -30.39613 -29.04314 -26.66509 -25.34731 -24.47187 -23.72400 -23.13294 -23.00907 -20.16266 -19.58861 -19.03003 -18.62965 -18.04522 -17.62357 -17.29456 -17.00641 -16.94667 -16.57900 -16.14715 -16.03325 -15.44164 -15.30353 -14.96041 -14.70065 -14.42814 -14.26635 -14.01077 -13.62958 -13.43869 -13.33334 -13.30991 -13.25133 -13.03807 -12.88949 -12.84164 -12.64548 -12.45457 -12.15705 -11.89353 -11.74383 -11.66821 -11.44728 -10.69651 -10.64921 -10.48456 -9.79672 -9.46419 -8.41199 -8.23391 -6.38138 -0.92702 0.84715 1.31002 1.34461 1.36830 1.40084 1.47455 1.78211 2.27344 2.41186 2.65759 3.06800 3.17620 3.36020 3.52506 3.73341 3.87887 3.96049 4.12295 4.22774 4.32995 4.38467 4.44237 4.46369 4.58211 4.67304 4.71311 4.83306 4.96243 5.00507 5.06212 5.08228 5.22384 5.34629 5.41361 5.42149 5.56543 5.76190 5.82993 5.84172 6.04767 6.43375 6.68490 6.78148 7.00561 7.22233 7.26987 7.43915 8.83393 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020394 B = 0.002389 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.638616 B =11719.901366 C =12348.780320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.097 3.903 3 N -0.601 5.601 4 C 0.261 3.739 5 C -0.541 4.541 6 H 0.057 0.943 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.966 3.034 10 H -0.276 1.276 11 H -0.282 1.282 12 H -0.260 1.260 13 C 0.500 3.500 14 O -0.596 6.596 15 C -0.139 4.139 16 C 0.110 3.890 17 N -0.616 5.616 18 C 0.570 3.430 19 O -0.480 6.480 20 C -0.221 4.221 21 N -0.419 5.419 22 C 0.030 3.970 23 C -0.062 4.062 24 C -0.255 4.255 25 C 0.348 3.652 26 O -0.583 6.583 27 H 0.033 0.967 28 H 0.064 0.936 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.069 0.931 32 H 0.020 0.980 33 H -0.003 1.003 34 H 0.266 0.734 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.444 0.556 40 H 0.451 0.549 41 H 0.190 0.810 42 H 0.164 0.836 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.993 -13.916 -20.008 24.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.025 4.025 3 N -0.331 5.331 4 C 0.139 3.861 5 C -0.579 4.579 6 H 0.075 0.925 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.790 3.210 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.184 1.184 13 C 0.288 3.712 14 O -0.478 6.478 15 C -0.179 4.179 16 C -0.013 4.013 17 N -0.239 5.239 18 C 0.388 3.612 19 O -0.294 6.294 20 C -0.346 4.346 21 N -0.130 5.130 22 C -0.152 4.152 23 C -0.082 4.082 24 C -0.282 4.282 25 C 0.247 3.753 26 O -0.478 6.478 27 H 0.053 0.947 28 H 0.083 0.917 29 H 0.113 0.887 30 H 0.128 0.872 31 H 0.087 0.913 32 H 0.038 0.962 33 H 0.015 0.985 34 H 0.075 0.925 35 H 0.152 0.848 36 H 0.150 0.850 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.288 0.712 40 H 0.323 0.677 41 H 0.206 0.794 42 H 0.182 0.818 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.132 -12.633 -18.594 23.058 hybrid contribution 1.202 0.610 -0.067 1.350 sum -3.930 -12.024 -18.660 22.544 Atomic orbital electron populations 1.22176 0.94723 1.03539 1.01720 1.21808 0.95153 0.81140 1.04363 1.48264 1.63455 1.15207 1.06200 1.18697 0.95225 0.91570 0.80563 1.21681 0.97872 1.31938 1.06443 0.92491 1.25862 1.02263 0.94579 0.96580 1.70048 1.37804 1.34253 1.14812 0.85497 0.79191 0.78999 0.77312 1.20195 1.20757 1.18433 1.20943 0.77414 0.86425 0.86398 1.90695 1.48335 1.20645 1.88137 1.21819 1.07203 0.99896 0.88950 1.21595 1.04117 0.95716 0.79876 1.45515 1.56626 1.17592 1.04213 1.19373 0.78464 0.78717 0.84693 1.83715 1.32463 1.19158 1.94067 1.19485 1.29200 0.94049 0.91833 1.66989 1.06537 1.06217 1.33230 1.22933 1.03965 1.01472 0.86797 1.22399 0.91059 0.93918 1.00822 1.22912 1.08484 0.97413 0.99410 1.17914 0.78346 0.88558 0.90493 1.90801 1.48372 1.17971 1.90654 0.94747 0.91687 0.88674 0.87166 0.91253 0.96216 0.98523 0.92481 0.84814 0.85000 0.89588 0.88839 0.71200 0.67717 0.79362 0.81849 0.85082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 10.24 71.98 0.74 -2.51 16 2 C 0.10 2.39 5.93 86.38 0.51 2.90 16 3 N -0.60 -22.04 2.46 -826.15 -2.03 -24.07 16 4 C 0.26 13.21 5.16 85.63 0.44 13.65 16 5 C -0.54 -29.51 9.39 25.60 0.24 -29.27 16 6 H 0.06 3.02 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.34 5.46 84.65 0.46 0.81 16 8 N -0.93 -54.91 13.29 21.45 0.28 -54.63 16 9 Si 0.97 43.25 29.54 68.60 2.03 45.28 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 12 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 13 C 0.50 16.97 7.67 87.66 0.67 17.64 16 14 O -0.60 -26.89 15.56 -3.03 -0.05 -26.94 16 15 C -0.14 -2.41 4.37 29.85 0.13 -2.28 16 16 C 0.11 1.91 4.97 86.38 0.43 2.34 16 17 N -0.62 -8.46 5.53 -457.37 -2.53 -10.99 16 18 C 0.57 11.01 7.70 85.06 0.65 11.66 16 19 O -0.48 -9.70 10.63 -54.23 -0.58 -10.28 16 20 C -0.22 -5.15 6.61 40.53 0.27 -4.89 16 21 N -0.42 -7.98 9.41 -187.99 -1.77 -9.75 16 22 C 0.03 0.45 11.16 85.13 0.95 1.40 16 23 C -0.06 -0.95 10.04 22.17 0.22 -0.73 16 24 C -0.25 -5.91 10.09 22.54 0.23 -5.68 16 25 C 0.35 10.06 6.73 23.79 0.16 10.22 16 26 O -0.58 -20.74 15.88 14.56 0.23 -20.51 16 27 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.06 1.11 7.22 -2.39 -0.02 1.09 16 29 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.11 1.72 6.44 -2.38 -0.02 1.71 16 31 H 0.07 1.93 8.07 -2.39 -0.02 1.91 16 32 H 0.02 1.03 8.07 -2.38 -0.02 1.01 16 33 H 0.00 -0.20 7.42 -2.39 -0.02 -0.22 16 34 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 35 H 0.13 1.53 7.40 -2.38 -0.02 1.51 16 36 H 0.13 1.52 7.19 -2.39 -0.02 1.50 16 37 H 0.09 1.83 8.10 -2.38 -0.02 1.81 16 38 H 0.09 1.76 8.10 -2.39 -0.02 1.74 16 39 H 0.44 4.48 7.69 -92.71 -0.71 3.77 16 40 H 0.45 5.38 9.15 -74.06 -0.68 4.70 16 41 H 0.19 1.35 8.06 -2.91 -0.02 1.33 16 42 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 43 H 0.13 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -86.32 370.56 1.37 -84.96 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -0.33 Total: 11.66 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: 6.11 Total: 15.27 kcal Atomic # 7 Polarization: -93.40 SS G_CDS: -6.04 Total: -99.44 kcal Atomic # 8 Polarization: -57.34 SS G_CDS: -0.39 Total: -57.74 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -86.32 1.37 -84.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320051433.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.443 kcal (2) G-P(sol) polarization free energy of solvation -86.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.01 seconds