Wall clock time and date at job start Tue Mar 31 2020 12:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46498 * 109.47010 * 2 1 4 4 C 1.46509 * 119.99913 * 269.99623 * 3 2 1 5 5 C 1.50698 * 109.47116 * 270.00314 * 4 3 2 6 6 H 1.08007 * 119.99726 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00162 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99922 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00116 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46933 * 89.99693 * 9 7 5 11 11 H 1.48504 * 109.46984 * 210.00019 * 9 7 5 12 12 H 1.48502 * 109.46903 * 330.00098 * 9 7 5 13 13 C 1.34776 * 120.00274 * 89.99485 * 3 2 1 14 14 O 1.21286 * 119.99955 * 179.97438 * 13 3 2 15 15 C 1.50695 * 120.00148 * 359.97438 * 13 3 2 16 16 C 1.52999 * 109.47166 * 179.97438 * 15 13 3 17 17 N 1.46509 * 109.46831 * 180.02562 * 16 15 13 18 18 C 1.34746 * 119.99551 * 179.97438 * 17 16 15 19 19 O 1.34276 * 120.00225 * 5.49155 * 18 17 16 20 20 C 1.41521 * 119.99531 * 185.48556 * 18 17 16 21 21 N 1.33554 * 120.01281 * 189.99693 * 20 18 17 22 22 C 1.30912 * 121.62866 * 179.97438 * 21 20 18 23 23 C 1.39496 * 121.49384 * 0.02562 * 22 21 20 24 24 C 1.36516 * 119.85451 * 359.97438 * 23 22 21 25 25 C 1.40999 * 118.46988 * 359.75189 * 24 23 22 26 26 O 1.22433 * 120.70316 * 180.26358 * 25 24 23 27 27 H 1.08998 * 109.47155 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47142 * 300.00608 * 1 2 3 29 29 H 1.09004 * 109.46544 * 60.00392 * 1 2 3 30 30 H 1.08993 * 109.47142 * 239.99392 * 2 1 3 31 31 H 1.08998 * 109.46391 * 119.99200 * 2 1 3 32 32 H 1.09005 * 109.46833 * 30.00096 * 4 3 2 33 33 H 1.08993 * 109.47293 * 149.99865 * 4 3 2 34 34 H 0.97000 * 119.99829 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.46890 * 300.00125 * 15 13 3 36 36 H 1.09005 * 109.47031 * 59.99604 * 15 13 3 37 37 H 1.09000 * 109.47226 * 299.99497 * 16 15 13 38 38 H 1.08995 * 109.47268 * 60.00028 * 16 15 13 39 39 H 0.96993 * 119.99887 * 0.02562 * 17 16 15 40 40 H 0.96702 * 116.99675 * 180.02562 * 19 18 17 41 41 H 1.08003 * 119.24815 * 180.02562 * 22 21 20 42 42 H 1.07994 * 120.07353 * 179.97438 * 23 22 21 43 43 H 1.08002 * 120.76372 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.6859 1.8350 -1.7038 6 1 4.3429 1.2308 -1.0957 7 6 4.1493 2.3895 -2.8780 8 7 3.3490 3.1247 -3.6187 9 14 5.9138 2.0965 -3.4168 10 1 5.9778 0.8750 -4.2589 11 1 6.3924 3.2637 -4.2003 12 1 6.7737 1.9178 -2.2194 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1600 1.1671 15 6 1.9911 1.3066 2.4723 16 6 2.3232 2.2438 3.6351 17 7 2.0790 1.5532 4.9039 18 6 2.3046 2.1881 6.0708 19 8 2.6467 3.4866 6.0735 20 6 2.1807 1.4865 7.2936 21 7 2.2060 2.1520 8.4512 22 6 2.0937 1.5350 9.6004 23 6 1.9423 0.1502 9.6723 24 6 1.9085 -0.5902 8.5258 25 6 2.0240 0.0788 7.2900 26 8 1.9939 -0.5443 6.2366 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.5818 1.6876 -2.0285 33 1 2.0956 3.1410 -1.1386 34 1 3.6752 3.5152 -4.4446 35 1 0.9431 1.0128 2.5297 36 1 2.6210 0.4188 2.5303 37 1 3.3714 2.5371 3.5775 38 1 1.6937 3.1317 3.5773 39 1 1.7556 0.6387 4.9039 40 1 2.7988 3.8987 6.9349 41 1 2.1188 2.1114 10.5134 42 1 1.8521 -0.3352 10.6327 43 1 1.7923 -1.6632 8.5644 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320051434.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:34 Heat of formation + Delta-G solvation = -60.373473 kcal Electronic energy + Delta-G solvation = -26432.519514 eV Core-core repulsion = 22478.985408 eV Total energy + Delta-G solvation = -3953.534105 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 4.80 seconds Orbital eigenvalues (eV) -41.27429 -39.52995 -39.11406 -37.47855 -36.26968 -35.42431 -33.01426 -32.64270 -31.48078 -30.18634 -29.52172 -27.35769 -25.60248 -23.76448 -23.10568 -23.01543 -22.56384 -22.02192 -19.03097 -18.69061 -17.80560 -17.06291 -16.71547 -16.41453 -16.34697 -16.27427 -15.60096 -15.42627 -15.21250 -14.88190 -14.41923 -14.30721 -13.84454 -13.57364 -13.48128 -13.14833 -12.94532 -12.65440 -12.49711 -12.47597 -12.24546 -12.06539 -11.83710 -11.60395 -11.24378 -10.97532 -10.82868 -10.72134 -10.60687 -10.55248 -10.19874 -9.72416 -9.71114 -9.13844 -9.06441 -8.49615 -7.80113 -7.65522 -6.10682 -4.15744 0.09247 1.72134 1.97078 2.06243 3.11802 3.20275 3.26208 3.33200 3.37608 3.81098 3.90924 4.00686 4.39175 4.48390 4.67431 4.83174 4.87595 4.92963 4.99439 5.06842 5.17383 5.24158 5.37219 5.50865 5.52885 5.59807 5.61900 5.72315 5.93556 5.97622 6.08055 6.13859 6.15702 6.34864 6.40740 6.43374 6.94880 7.10997 7.34675 7.42602 7.72681 7.84963 7.99404 8.15545 8.26791 8.78366 8.93832 9.49611 10.97443 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020634 B = 0.002472 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.650739 B =11322.045290 C =11777.942490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.103 3.897 3 N -0.592 5.592 4 C 0.246 3.754 5 C -0.528 4.528 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.512 3.488 14 O -0.541 6.541 15 C -0.158 4.158 16 C 0.102 3.898 17 N -0.610 5.610 18 C 0.567 3.433 19 O -0.456 6.456 20 C -0.236 4.236 21 N -0.413 5.413 22 C 0.023 3.977 23 C -0.079 4.079 24 C -0.220 4.220 25 C 0.368 3.632 26 O -0.566 6.566 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.033 0.967 33 H 0.044 0.956 34 H 0.264 0.736 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.445 0.555 40 H 0.447 0.553 41 H 0.153 0.847 42 H 0.127 0.873 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.720 -4.783 22.495 23.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.021 4.021 3 N -0.324 5.324 4 C 0.127 3.873 5 C -0.567 4.567 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.297 3.703 14 O -0.419 6.419 15 C -0.198 4.198 16 C -0.020 4.020 17 N -0.252 5.252 18 C 0.378 3.622 19 O -0.256 6.256 20 C -0.361 4.361 21 N -0.123 5.123 22 C -0.157 4.157 23 C -0.100 4.100 24 C -0.248 4.248 25 C 0.270 3.730 26 O -0.461 6.461 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.303 0.697 40 H 0.310 0.690 41 H 0.170 0.830 42 H 0.145 0.855 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.429 -3.387 20.784 21.747 hybrid contribution 0.805 -1.254 0.448 1.556 sum -4.624 -4.641 21.233 22.221 Atomic orbital electron populations 1.22222 0.96630 1.01627 1.02312 1.21477 0.93625 0.84009 1.02981 1.48255 1.63117 1.13335 1.07653 1.19313 0.96416 0.93648 0.77933 1.21409 0.96843 1.32081 1.06345 0.92457 1.24937 0.97924 0.94858 0.96370 1.69927 1.35724 1.33339 1.14297 0.86492 0.84560 0.77723 0.78620 1.20604 1.21050 1.19891 1.19814 0.78975 0.86814 0.84713 1.90707 1.46080 1.17943 1.87175 1.21899 1.04503 1.00095 0.93347 1.21810 1.04681 0.95857 0.79684 1.46059 1.56294 1.19395 1.03403 1.19352 0.75866 0.80760 0.86242 1.83871 1.79381 1.20020 1.42282 1.19335 1.32848 0.93819 0.90117 1.66695 1.06988 1.40743 0.97911 1.22087 1.07143 0.92068 0.94400 1.21972 0.93733 0.95327 0.98977 1.22627 1.07334 1.01177 0.93619 1.17355 0.77338 0.88135 0.90190 1.90436 1.52951 1.69225 1.33530 0.91981 0.93118 0.91953 0.89712 0.91548 0.94859 0.93788 0.92655 0.88342 0.88001 0.88319 0.88408 0.69731 0.68991 0.83022 0.85513 0.84952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 10.24 37.16 0.38 -1.73 16 2 C 0.10 1.54 5.93 -4.04 -0.02 1.51 16 3 N -0.59 -11.66 2.46 -175.06 -0.43 -12.09 16 4 C 0.25 6.16 5.16 -5.19 -0.03 6.14 16 5 C -0.53 -14.55 9.39 -34.44 -0.32 -14.87 16 6 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 9 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.51 9.58 7.67 -10.99 -0.08 9.49 16 14 O -0.54 -12.40 15.56 5.55 0.09 -12.32 16 15 C -0.16 -1.99 4.37 -27.89 -0.12 -2.12 16 16 C 0.10 1.21 4.97 -4.04 -0.02 1.19 16 17 N -0.61 -6.63 5.31 -60.40 -0.32 -6.95 16 18 C 0.57 5.98 7.80 -15.02 -0.12 5.86 16 19 O -0.46 -3.80 12.69 -14.69 -0.19 -3.99 16 20 C -0.24 -2.79 6.61 -84.57 -0.56 -3.34 16 21 N -0.41 -4.31 9.33 -10.77 -0.10 -4.41 16 22 C 0.02 0.20 11.17 -17.48 -0.20 0.01 16 23 C -0.08 -0.71 10.04 -39.73 -0.40 -1.10 16 24 C -0.22 -2.52 10.09 -39.16 -0.40 -2.92 16 25 C 0.37 4.99 6.72 -37.24 -0.25 4.74 16 26 O -0.57 -8.68 14.44 4.52 0.07 -8.61 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.58 7.22 -51.93 -0.37 0.21 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 31 H 0.07 0.81 6.44 -51.93 -0.33 0.48 16 32 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 33 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 34 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.10 1.03 7.18 -51.93 -0.37 0.65 16 36 H 0.10 1.17 7.40 -51.93 -0.38 0.78 16 37 H 0.10 1.26 8.10 -51.93 -0.42 0.84 16 38 H 0.10 1.17 8.10 -51.93 -0.42 0.75 16 39 H 0.44 5.15 5.15 -40.87 -0.21 4.94 16 40 H 0.45 2.19 8.12 45.56 0.37 2.56 16 41 H 0.15 0.90 8.06 -52.48 -0.42 0.47 16 42 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 367.40 15.07 5.54 5.54 Total: -1.00 -35.05 367.40 -6.90 -41.95 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -5.03 Total: 5.25 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: -2.23 Total: 4.47 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: -0.11 Total: -48.77 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.03 Total: -24.92 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.05 -6.90 -41.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320051434.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.426 kcal (2) G-P(sol) polarization free energy of solvation -35.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.80 seconds