Wall clock time and date at job start Tue Mar 31 2020 12:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46498 * 109.47010 * 2 1 4 4 C 1.46509 * 119.99913 * 269.99623 * 3 2 1 5 5 C 1.50698 * 109.47116 * 270.00314 * 4 3 2 6 6 H 1.08007 * 119.99726 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00162 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99922 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00116 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46933 * 89.99693 * 9 7 5 11 11 H 1.48504 * 109.46984 * 210.00019 * 9 7 5 12 12 H 1.48502 * 109.46903 * 330.00098 * 9 7 5 13 13 C 1.34776 * 120.00274 * 89.99485 * 3 2 1 14 14 O 1.21286 * 119.99955 * 179.97438 * 13 3 2 15 15 C 1.50695 * 120.00148 * 359.97438 * 13 3 2 16 16 C 1.52999 * 109.47166 * 179.97438 * 15 13 3 17 17 N 1.46509 * 109.46831 * 180.02562 * 16 15 13 18 18 C 1.34746 * 119.99551 * 179.97438 * 17 16 15 19 19 O 1.34276 * 120.00225 * 5.49155 * 18 17 16 20 20 C 1.41521 * 119.99531 * 185.48556 * 18 17 16 21 21 N 1.33554 * 120.01281 * 189.99693 * 20 18 17 22 22 C 1.30912 * 121.62866 * 179.97438 * 21 20 18 23 23 C 1.39496 * 121.49384 * 0.02562 * 22 21 20 24 24 C 1.36516 * 119.85451 * 359.97438 * 23 22 21 25 25 C 1.40999 * 118.46988 * 359.75189 * 24 23 22 26 26 O 1.22433 * 120.70316 * 180.26358 * 25 24 23 27 27 H 1.08998 * 109.47155 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47142 * 300.00608 * 1 2 3 29 29 H 1.09004 * 109.46544 * 60.00392 * 1 2 3 30 30 H 1.08993 * 109.47142 * 239.99392 * 2 1 3 31 31 H 1.08998 * 109.46391 * 119.99200 * 2 1 3 32 32 H 1.09005 * 109.46833 * 30.00096 * 4 3 2 33 33 H 1.08993 * 109.47293 * 149.99865 * 4 3 2 34 34 H 0.97000 * 119.99829 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.46890 * 300.00125 * 15 13 3 36 36 H 1.09005 * 109.47031 * 59.99604 * 15 13 3 37 37 H 1.09000 * 109.47226 * 299.99497 * 16 15 13 38 38 H 1.08995 * 109.47268 * 60.00028 * 16 15 13 39 39 H 0.96993 * 119.99887 * 0.02562 * 17 16 15 40 40 H 0.96702 * 116.99675 * 180.02562 * 19 18 17 41 41 H 1.08003 * 119.24815 * 180.02562 * 22 21 20 42 42 H 1.07994 * 120.07353 * 179.97438 * 23 22 21 43 43 H 1.08002 * 120.76372 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.6859 1.8350 -1.7038 6 1 4.3429 1.2308 -1.0957 7 6 4.1493 2.3895 -2.8780 8 7 3.3490 3.1247 -3.6187 9 14 5.9138 2.0965 -3.4168 10 1 5.9778 0.8750 -4.2589 11 1 6.3924 3.2637 -4.2003 12 1 6.7737 1.9178 -2.2194 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1600 1.1671 15 6 1.9911 1.3066 2.4723 16 6 2.3232 2.2438 3.6351 17 7 2.0790 1.5532 4.9039 18 6 2.3046 2.1881 6.0708 19 8 2.6467 3.4866 6.0735 20 6 2.1807 1.4865 7.2936 21 7 2.2060 2.1520 8.4512 22 6 2.0937 1.5350 9.6004 23 6 1.9423 0.1502 9.6723 24 6 1.9085 -0.5902 8.5258 25 6 2.0240 0.0788 7.2900 26 8 1.9939 -0.5443 6.2366 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.5818 1.6876 -2.0285 33 1 2.0956 3.1410 -1.1386 34 1 3.6752 3.5152 -4.4446 35 1 0.9431 1.0128 2.5297 36 1 2.6210 0.4188 2.5303 37 1 3.3714 2.5371 3.5775 38 1 1.6937 3.1317 3.5773 39 1 1.7556 0.6387 4.9039 40 1 2.7988 3.8987 6.9349 41 1 2.1188 2.1114 10.5134 42 1 1.8521 -0.3352 10.6327 43 1 1.7923 -1.6632 8.5644 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320051434.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:27 Heat of formation + Delta-G solvation = -87.303638 kcal Electronic energy + Delta-G solvation = -26433.687293 eV Core-core repulsion = 22478.985408 eV Total energy + Delta-G solvation = -3954.701885 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 7.11 seconds Orbital eigenvalues (eV) -42.09176 -40.88836 -40.02113 -38.34582 -37.26421 -36.87865 -34.95468 -33.57932 -32.52150 -31.57028 -30.44226 -29.07263 -26.71874 -25.15187 -24.41039 -23.88682 -23.39786 -23.29904 -20.03864 -19.77857 -18.87826 -18.58309 -17.99028 -17.71180 -17.34280 -17.16702 -17.08102 -16.54623 -16.18971 -16.06957 -15.79025 -15.43579 -14.98170 -14.74705 -14.52047 -14.26509 -14.19697 -13.87579 -13.59905 -13.43578 -13.31969 -13.28140 -13.26131 -13.01353 -12.83699 -12.68499 -12.45726 -12.17542 -11.88380 -11.72939 -11.56742 -11.41728 -10.71560 -10.65380 -10.50203 -9.91561 -9.48235 -8.52641 -8.24016 -6.38485 -0.70342 0.93199 1.14371 1.23656 1.35805 1.38164 1.48348 1.74714 2.18702 2.37121 2.57068 3.05939 3.09722 3.17140 3.45827 3.68826 3.84880 3.90129 4.09556 4.19842 4.24011 4.34622 4.39979 4.41840 4.56024 4.66004 4.67968 4.79079 4.94549 4.97790 5.04974 5.13005 5.21278 5.34966 5.37825 5.38973 5.55770 5.56580 5.75717 5.82037 6.04544 6.36768 6.66921 6.75618 6.92943 7.12219 7.25400 7.41280 8.83037 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020634 B = 0.002472 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.650739 B =11322.045290 C =11777.942490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.096 3.904 3 N -0.600 5.600 4 C 0.261 3.739 5 C -0.542 4.542 6 H 0.054 0.946 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.966 3.034 10 H -0.265 1.265 11 H -0.281 1.281 12 H -0.273 1.273 13 C 0.504 3.496 14 O -0.592 6.592 15 C -0.141 4.141 16 C 0.113 3.887 17 N -0.608 5.608 18 C 0.571 3.429 19 O -0.451 6.451 20 C -0.247 4.247 21 N -0.419 5.419 22 C 0.024 3.976 23 C -0.062 4.062 24 C -0.251 4.251 25 C 0.344 3.656 26 O -0.599 6.599 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.022 0.978 33 H 0.000 1.000 34 H 0.267 0.733 35 H 0.129 0.871 36 H 0.122 0.878 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.444 0.556 40 H 0.460 0.540 41 H 0.188 0.812 42 H 0.164 0.836 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.522 -6.013 25.103 26.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.026 4.026 3 N -0.331 5.331 4 C 0.140 3.860 5 C -0.581 4.581 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.791 3.209 10 H -0.190 1.190 11 H -0.207 1.207 12 H -0.197 1.197 13 C 0.292 3.708 14 O -0.474 6.474 15 C -0.181 4.181 16 C -0.010 4.010 17 N -0.250 5.250 18 C 0.381 3.619 19 O -0.252 6.252 20 C -0.372 4.372 21 N -0.129 5.129 22 C -0.156 4.156 23 C -0.082 4.082 24 C -0.278 4.278 25 C 0.249 3.751 26 O -0.498 6.498 27 H 0.112 0.888 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.120 0.880 32 H 0.040 0.960 33 H 0.018 0.982 34 H 0.076 0.924 35 H 0.147 0.853 36 H 0.140 0.860 37 H 0.105 0.895 38 H 0.113 0.887 39 H 0.302 0.698 40 H 0.326 0.674 41 H 0.205 0.795 42 H 0.182 0.818 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.248 -4.639 23.440 24.464 hybrid contribution 0.708 -0.824 -0.209 1.106 sum -4.540 -5.463 23.231 24.293 Atomic orbital electron populations 1.22165 0.94520 1.03531 1.01838 1.21792 0.95355 0.81288 1.04131 1.48259 1.63449 1.15097 1.06263 1.18728 0.95248 0.91676 0.80357 1.21704 0.97896 1.31955 1.06507 0.92821 1.25842 1.02292 0.94520 0.96494 1.70046 1.37729 1.34221 1.14772 0.85437 0.79142 0.78134 0.78227 1.18980 1.20684 1.19737 1.20790 0.77449 0.86394 0.86183 1.90676 1.48196 1.20427 1.88087 1.21790 1.06820 0.99862 0.89602 1.21578 1.03901 0.95620 0.79946 1.45856 1.56789 1.19269 1.03061 1.19293 0.75450 0.81281 0.85826 1.83887 1.78763 1.19025 1.43551 1.19386 1.33378 0.93394 0.91008 1.66792 1.07536 1.40653 0.97950 1.22838 1.04992 0.92655 0.95130 1.22377 0.90824 0.95297 0.99708 1.22757 1.09380 1.01756 0.93926 1.17807 0.77589 0.89046 0.90651 1.90398 1.55078 1.69871 1.34444 0.88812 0.91826 0.94226 0.90984 0.87966 0.95997 0.98188 0.92415 0.85270 0.85997 0.89550 0.88686 0.69850 0.67393 0.79478 0.81826 0.84710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.76 10.24 71.98 0.74 -3.03 16 2 C 0.10 2.76 5.93 86.38 0.51 3.27 16 3 N -0.60 -23.97 2.46 -826.14 -2.03 -26.00 16 4 C 0.26 13.73 5.16 85.63 0.44 14.17 16 5 C -0.54 -30.70 9.39 25.60 0.24 -30.46 16 6 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 7 C 0.01 0.43 5.46 84.65 0.46 0.89 16 8 N -0.93 -55.63 13.29 21.45 0.28 -55.35 16 9 Si 0.97 44.53 29.54 68.60 2.03 46.56 16 10 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 13 C 0.50 19.03 7.67 87.66 0.67 19.70 16 14 O -0.59 -28.24 15.56 -3.05 -0.05 -28.29 16 15 C -0.14 -3.34 4.37 29.85 0.13 -3.21 16 16 C 0.11 2.58 4.97 86.38 0.43 3.01 16 17 N -0.61 -12.67 5.31 -457.34 -2.43 -15.10 16 18 C 0.57 11.53 7.80 85.06 0.66 12.19 16 19 O -0.45 -7.04 12.69 -75.47 -0.96 -8.00 16 20 C -0.25 -5.57 6.61 40.53 0.27 -5.30 16 21 N -0.42 -7.84 9.33 -187.99 -1.75 -9.59 16 22 C 0.02 0.35 11.17 85.13 0.95 1.30 16 23 C -0.06 -0.91 10.04 22.17 0.22 -0.69 16 24 C -0.25 -5.44 10.09 22.54 0.23 -5.21 16 25 C 0.34 9.16 6.72 23.79 0.16 9.32 16 26 O -0.60 -18.34 14.44 -6.75 -0.10 -18.44 16 27 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.06 1.31 7.22 -2.39 -0.02 1.29 16 29 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.07 2.24 8.07 -2.39 -0.02 2.22 16 31 H 0.10 2.20 6.44 -2.39 -0.02 2.18 16 32 H 0.02 1.18 8.07 -2.38 -0.02 1.16 16 33 H 0.00 0.00 7.42 -2.39 -0.02 -0.02 16 34 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 35 H 0.13 2.32 7.18 -2.39 -0.02 2.30 16 36 H 0.12 2.48 7.40 -2.38 -0.02 2.46 16 37 H 0.09 2.21 8.10 -2.39 -0.02 2.19 16 38 H 0.09 2.24 8.10 -2.39 -0.02 2.22 16 39 H 0.44 9.86 5.15 -93.48 -0.48 9.38 16 40 H 0.46 3.86 8.12 -74.06 -0.60 3.25 16 41 H 0.19 1.34 8.06 -2.91 -0.02 1.32 16 42 H 0.16 1.15 8.06 -2.91 -0.02 1.12 16 43 H 0.13 2.71 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -80.17 367.40 1.09 -79.09 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -0.03 Total: 19.17 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: 6.12 Total: 15.95 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -5.93 Total: -106.04 kcal Atomic # 8 Polarization: -53.63 SS G_CDS: -1.10 Total: -54.73 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -80.17 1.09 -79.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320051434.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.217 kcal (2) G-P(sol) polarization free energy of solvation -80.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.11 seconds