Wall clock time and date at job start Tue Mar 31 2020 12:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.35676 * 117.00176 * 180.02562 * 3 2 1 5 5 N 1.32276 * 119.68324 * 359.97438 * 4 3 2 6 6 C 1.31936 * 121.64885 * 179.97438 * 5 4 3 7 7 C 1.38091 * 120.83342 * 0.02562 * 6 5 4 8 8 C 1.38788 * 119.28648 * 359.97438 * 7 6 5 9 9 C 1.38424 * 118.48619 * 359.75515 * 8 7 6 10 10 C 1.50693 * 120.44682 * 180.24359 * 9 8 7 11 11 N 1.46496 * 109.47182 * 260.25154 * 10 9 8 12 12 C 1.34783 * 120.00146 * 179.97438 * 11 10 9 13 13 O 1.21345 * 120.00078 * 359.97438 * 12 11 10 14 14 C 1.49453 * 119.99837 * 180.02562 * 12 11 10 15 15 O 1.21345 * 120.00085 * 359.97438 * 14 12 11 16 16 N 1.34776 * 119.99542 * 180.02562 * 14 12 11 17 17 C 1.46505 * 119.99953 * 179.97438 * 16 14 12 18 18 C 1.52997 * 109.47380 * 179.97438 * 17 16 14 19 19 C 1.50694 * 109.47173 * 179.97438 * 18 17 16 20 20 H 1.08006 * 120.00073 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00162 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00198 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 119.99969 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47459 * 89.99727 * 23 21 19 25 25 H 1.48501 * 109.47310 * 210.00212 * 23 21 19 26 26 H 1.48503 * 109.47124 * 329.99863 * 23 21 19 27 27 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 29 29 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 30 30 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 31 31 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 32 32 H 1.08003 * 119.58431 * 179.97438 * 6 5 4 33 33 H 1.08000 * 120.35648 * 180.02562 * 7 6 5 34 34 H 1.07997 * 120.75822 * 180.02562 * 8 7 6 35 35 H 1.09004 * 109.47059 * 20.24793 * 10 9 8 36 36 H 1.09001 * 109.47661 * 140.24511 * 10 9 8 37 37 H 0.97002 * 119.99999 * 0.02562 * 11 10 9 38 38 H 0.97000 * 120.00626 * 359.97438 * 16 14 12 39 39 H 1.09004 * 109.46722 * 299.99814 * 17 16 14 40 40 H 1.09006 * 109.46649 * 59.99243 * 17 16 14 41 41 H 1.08996 * 109.47257 * 300.00464 * 18 17 16 42 42 H 1.09003 * 109.46769 * 60.00104 * 18 17 16 43 43 H 0.97005 * 119.99923 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3514 1.5250 -0.0005 5 7 4.1514 0.4716 -0.0005 6 6 5.4645 0.5995 -0.0015 7 6 6.0540 1.8482 -0.0021 8 6 5.2492 2.9789 -0.0022 9 6 3.8752 2.8113 -0.0069 10 6 2.9598 4.0083 -0.0126 11 7 2.4725 4.2570 1.3463 12 6 1.6340 5.2851 1.5840 13 8 1.2831 6.0051 0.6724 14 6 1.1373 5.5391 2.9705 15 8 1.4885 4.8194 3.8822 16 7 0.2984 6.5669 3.2080 17 6 -0.1890 6.8155 4.5671 18 6 -1.1178 8.0313 4.5613 19 6 -1.6196 8.2867 5.9591 20 1 -1.3069 7.6462 6.7706 21 6 -2.4779 9.3380 6.2022 22 7 -2.9154 9.5612 7.4221 23 14 -3.0192 10.4454 4.7986 24 1 -4.2579 9.9001 4.1872 25 1 -3.2837 11.8108 5.3191 26 1 -1.9464 10.5057 3.7736 27 1 -0.3635 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 6.0863 -0.2837 -0.0011 33 1 7.1298 1.9440 -0.0034 34 1 5.6850 3.9670 -0.0031 35 1 3.5064 4.8819 -0.3681 36 1 2.1139 3.8158 -0.6725 37 1 2.7538 3.6821 2.0752 38 1 0.0173 7.1420 2.4792 39 1 -0.7355 5.9420 4.9225 40 1 0.6571 7.0081 5.2268 41 1 -0.5710 8.9046 4.2059 42 1 -1.9638 7.8390 3.9014 43 1 -3.5189 10.3011 7.5931 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323096267.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:44 Heat of formation + Delta-G solvation = -79.570275 kcal Electronic energy + Delta-G solvation = -25905.293986 eV Core-core repulsion = 21950.927445 eV Total energy + Delta-G solvation = -3954.366541 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.25283 -40.34017 -38.45490 -38.29985 -35.83555 -35.01743 -32.93010 -32.70365 -32.40872 -30.59753 -30.26724 -27.40323 -25.56791 -24.63205 -23.45203 -22.66340 -22.13013 -20.87650 -20.25212 -18.91646 -18.41773 -17.39405 -17.06964 -16.76557 -16.44324 -16.08729 -15.82522 -15.40250 -15.00600 -14.63761 -14.37580 -14.32777 -14.19135 -14.16508 -13.59202 -13.44471 -13.34679 -12.90360 -12.76279 -12.72955 -12.60711 -12.24365 -11.82101 -11.59288 -11.48473 -11.23786 -11.12524 -10.43368 -10.40307 -10.27874 -10.09661 -9.95147 -9.47010 -9.37470 -9.31158 -8.88693 -8.75348 -8.60480 -6.11762 -4.12395 0.53617 0.82130 1.58234 2.54217 2.61459 3.27276 3.30188 3.35189 3.37256 3.39598 3.78824 3.92174 4.27789 4.32823 4.38433 4.49108 4.66749 4.67991 4.70389 4.78330 4.97614 5.03118 5.15626 5.21396 5.34667 5.43127 5.51527 5.56164 5.72042 5.75999 5.96848 5.98560 6.05715 6.11796 6.48640 6.53455 6.83718 6.96976 7.11750 7.19678 7.37119 7.58770 7.63489 7.88045 8.24017 8.42606 8.91571 9.48250 11.00981 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020361 B = 0.002253 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.858142 B =12426.647746 C =12907.233622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.067 3.933 3 O -0.299 6.299 4 C 0.342 3.658 5 N -0.542 5.542 6 C 0.148 3.852 7 C -0.214 4.214 8 C -0.020 4.020 9 C -0.184 4.184 10 C 0.175 3.825 11 N -0.698 5.698 12 C 0.510 3.490 13 O -0.522 6.522 14 C 0.499 3.501 15 O -0.529 6.529 16 N -0.691 5.691 17 C 0.127 3.873 18 C -0.024 4.024 19 C -0.524 4.524 20 H 0.076 0.924 21 C 0.070 3.930 22 N -0.898 5.898 23 Si 0.881 3.119 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.265 1.265 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.161 0.839 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.412 0.588 38 H 0.409 0.591 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.025 0.975 42 H 0.020 0.980 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.068 -19.069 -19.760 32.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.008 4.008 3 O -0.205 6.205 4 C 0.163 3.837 5 N -0.266 5.266 6 C -0.008 4.008 7 C -0.235 4.235 8 C -0.046 4.046 9 C -0.187 4.187 10 C 0.052 3.948 11 N -0.351 5.351 12 C 0.291 3.709 13 O -0.397 6.397 14 C 0.279 3.721 15 O -0.406 6.406 16 N -0.342 5.342 17 C 0.006 3.994 18 C -0.061 4.061 19 C -0.562 4.562 20 H 0.095 0.905 21 C -0.132 4.132 22 N -0.536 5.536 23 Si 0.708 3.292 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.189 1.189 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.178 0.822 33 H 0.158 0.842 34 H 0.163 0.837 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.248 0.752 38 H 0.244 0.756 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.043 0.957 42 H 0.039 0.961 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 16.296 -19.571 -19.637 32.159 hybrid contribution 0.128 1.135 -0.620 1.300 sum 16.423 -18.436 -20.257 31.936 Atomic orbital electron populations 1.21837 0.92717 1.03016 1.03713 1.22655 0.95039 0.80646 1.02459 1.86311 1.16333 1.31001 1.86888 1.19676 0.84400 0.89253 0.90387 1.67428 1.06689 1.32819 1.19629 1.22518 0.89167 0.97590 0.91509 1.22014 1.01667 0.93112 1.06668 1.21458 0.91406 1.00101 0.91596 1.19862 0.94820 0.92876 1.11184 1.20000 0.96671 0.94133 0.83993 1.45765 1.47199 1.31217 1.10955 1.20403 0.79573 0.81198 0.89758 1.90750 1.56658 1.46708 1.45621 1.19953 0.81118 0.82566 0.88490 1.90745 1.57572 1.47041 1.45279 1.46199 1.45113 1.29487 1.13413 1.21710 0.98200 1.00110 0.79407 1.19823 0.94485 0.92724 0.99113 1.20877 1.28322 1.14607 0.92402 0.90547 1.24987 0.95500 0.97140 0.95592 1.69900 1.33287 1.30536 1.19848 0.86764 0.79510 0.80123 0.82799 1.20157 1.21243 1.18929 0.90183 0.91312 0.91573 0.91621 0.91449 0.82155 0.84160 0.83707 0.89917 0.89580 0.75176 0.75566 0.91291 0.91270 0.95708 0.96146 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 10.28 37.16 0.38 -0.74 16 2 C 0.07 0.57 6.03 37.16 0.22 0.79 16 3 O -0.30 -3.16 9.37 -18.73 -0.18 -3.34 16 4 C 0.34 3.43 7.47 -17.12 -0.13 3.30 16 5 N -0.54 -5.04 9.22 -13.33 -0.12 -5.17 16 6 C 0.15 0.98 11.18 -17.56 -0.20 0.79 16 7 C -0.21 -1.20 10.11 -39.43 -0.40 -1.60 16 8 C -0.02 -0.13 9.81 -39.31 -0.39 -0.52 16 9 C -0.18 -1.61 5.28 -104.32 -0.55 -2.16 16 10 C 0.18 1.71 5.48 -5.20 -0.03 1.68 16 11 N -0.70 -8.25 5.54 -61.91 -0.34 -8.60 16 12 C 0.51 7.49 7.89 -11.58 -0.09 7.40 16 13 O -0.52 -8.49 16.48 5.50 0.09 -8.40 16 14 C 0.50 8.42 7.89 -11.58 -0.09 8.33 16 15 O -0.53 -9.98 16.48 5.50 0.09 -9.89 16 16 N -0.69 -12.04 5.55 -60.72 -0.34 -12.38 16 17 C 0.13 2.57 5.61 -4.04 -0.02 2.55 16 18 C -0.02 -0.54 4.15 -27.89 -0.12 -0.66 16 19 C -0.52 -14.58 9.66 -34.44 -0.33 -14.92 16 20 H 0.08 2.29 7.99 -52.48 -0.42 1.87 16 21 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 22 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 23 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.26 -6.07 6.54 56.52 0.37 -5.70 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 31 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 32 H 0.16 0.59 8.06 -52.48 -0.42 0.17 16 33 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 34 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 35 H 0.08 0.72 8.03 -51.93 -0.42 0.30 16 36 H 0.09 0.92 7.87 -51.93 -0.41 0.51 16 37 H 0.41 4.78 7.94 -40.82 -0.32 4.46 16 38 H 0.41 6.60 7.94 -40.82 -0.32 6.27 16 39 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.02 0.56 7.20 -51.93 -0.37 0.19 16 42 H 0.02 0.46 7.57 -51.93 -0.39 0.06 16 43 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 375.07 15.07 5.65 5.65 Total: -1.00 -33.58 375.07 -6.92 -40.50 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -6.05 Total: 5.40 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -1.83 Total: 6.15 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -0.03 Total: -52.61 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: 0.01 Total: -21.62 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.58 -6.92 -40.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323096267.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.066 kcal (2) G-P(sol) polarization free energy of solvation -33.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds