Wall clock time and date at job start Tue Mar 31 2020 12:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.35676 * 117.00176 * 180.02562 * 3 2 1 5 5 N 1.32276 * 119.68324 * 359.97438 * 4 3 2 6 6 C 1.31936 * 121.64885 * 179.97438 * 5 4 3 7 7 C 1.38091 * 120.83342 * 0.02562 * 6 5 4 8 8 C 1.38788 * 119.28648 * 359.97438 * 7 6 5 9 9 C 1.38424 * 118.48619 * 359.75515 * 8 7 6 10 10 C 1.50693 * 120.44682 * 180.24359 * 9 8 7 11 11 N 1.46496 * 109.47182 * 260.25154 * 10 9 8 12 12 C 1.34783 * 120.00146 * 179.97438 * 11 10 9 13 13 O 1.21345 * 120.00078 * 359.97438 * 12 11 10 14 14 C 1.49453 * 119.99837 * 180.02562 * 12 11 10 15 15 O 1.21345 * 120.00085 * 359.97438 * 14 12 11 16 16 N 1.34776 * 119.99542 * 180.02562 * 14 12 11 17 17 C 1.46505 * 119.99953 * 179.97438 * 16 14 12 18 18 C 1.52997 * 109.47380 * 179.97438 * 17 16 14 19 19 C 1.50694 * 109.47173 * 179.97438 * 18 17 16 20 20 H 1.08006 * 120.00073 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00162 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00198 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 119.99969 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47459 * 89.99727 * 23 21 19 25 25 H 1.48501 * 109.47310 * 210.00212 * 23 21 19 26 26 H 1.48503 * 109.47124 * 329.99863 * 23 21 19 27 27 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 29 29 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 30 30 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 31 31 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 32 32 H 1.08003 * 119.58431 * 179.97438 * 6 5 4 33 33 H 1.08000 * 120.35648 * 180.02562 * 7 6 5 34 34 H 1.07997 * 120.75822 * 180.02562 * 8 7 6 35 35 H 1.09004 * 109.47059 * 20.24793 * 10 9 8 36 36 H 1.09001 * 109.47661 * 140.24511 * 10 9 8 37 37 H 0.97002 * 119.99999 * 0.02562 * 11 10 9 38 38 H 0.97000 * 120.00626 * 359.97438 * 16 14 12 39 39 H 1.09004 * 109.46722 * 299.99814 * 17 16 14 40 40 H 1.09006 * 109.46649 * 59.99243 * 17 16 14 41 41 H 1.08996 * 109.47257 * 300.00464 * 18 17 16 42 42 H 1.09003 * 109.46769 * 60.00104 * 18 17 16 43 43 H 0.97005 * 119.99923 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3514 1.5250 -0.0005 5 7 4.1514 0.4716 -0.0005 6 6 5.4645 0.5995 -0.0015 7 6 6.0540 1.8482 -0.0021 8 6 5.2492 2.9789 -0.0022 9 6 3.8752 2.8113 -0.0069 10 6 2.9598 4.0083 -0.0126 11 7 2.4725 4.2570 1.3463 12 6 1.6340 5.2851 1.5840 13 8 1.2831 6.0051 0.6724 14 6 1.1373 5.5391 2.9705 15 8 1.4885 4.8194 3.8822 16 7 0.2984 6.5669 3.2080 17 6 -0.1890 6.8155 4.5671 18 6 -1.1178 8.0313 4.5613 19 6 -1.6196 8.2867 5.9591 20 1 -1.3069 7.6462 6.7706 21 6 -2.4779 9.3380 6.2022 22 7 -2.9154 9.5612 7.4221 23 14 -3.0192 10.4454 4.7986 24 1 -4.2579 9.9001 4.1872 25 1 -3.2837 11.8108 5.3191 26 1 -1.9464 10.5057 3.7736 27 1 -0.3635 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 6.0863 -0.2837 -0.0011 33 1 7.1298 1.9440 -0.0034 34 1 5.6850 3.9670 -0.0031 35 1 3.5064 4.8819 -0.3681 36 1 2.1139 3.8158 -0.6725 37 1 2.7538 3.6821 2.0752 38 1 0.0173 7.1420 2.4792 39 1 -0.7355 5.9420 4.9225 40 1 0.6571 7.0081 5.2268 41 1 -0.5710 8.9046 4.2059 42 1 -1.9638 7.8390 3.9014 43 1 -3.5189 10.3011 7.5931 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323096267.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:43 Heat of formation + Delta-G solvation = -106.444592 kcal Electronic energy + Delta-G solvation = -25906.459344 eV Core-core repulsion = 21950.927445 eV Total energy + Delta-G solvation = -3955.531899 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.96556 -41.49975 -39.64173 -39.03583 -37.07271 -36.33717 -34.81492 -33.52159 -33.02623 -32.12795 -31.21962 -28.39167 -27.11190 -25.25886 -24.70513 -23.33499 -22.88211 -22.62702 -21.50228 -19.78819 -19.44056 -19.02218 -18.03051 -17.92437 -17.32436 -17.13538 -16.77706 -16.50457 -16.19676 -16.05853 -15.89077 -15.27806 -15.04863 -14.97157 -14.76655 -14.70520 -14.54688 -13.99568 -13.78106 -13.44007 -13.39500 -13.34036 -13.07114 -12.89818 -12.80900 -12.44015 -12.22977 -12.19740 -11.78087 -11.75403 -11.51535 -11.04547 -10.79150 -10.70239 -10.64358 -10.36661 -10.23951 -9.50135 -8.30292 -6.37129 -0.03590 0.28597 0.31420 1.36415 1.39979 1.41419 1.52773 2.01558 2.11337 2.36474 2.58207 2.85886 3.04897 3.22898 3.43049 3.65927 3.77342 4.04435 4.05179 4.11092 4.20205 4.26208 4.38367 4.40481 4.50023 4.54455 4.71908 4.72142 4.82028 4.89817 4.98030 5.04094 5.05345 5.17804 5.20966 5.29169 5.36953 5.50178 5.58496 5.87966 6.20075 6.22158 6.32417 6.66220 6.72407 6.81356 6.91358 7.27447 8.85966 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020361 B = 0.002253 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.858142 B =12426.647746 C =12907.233622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.067 3.933 3 O -0.319 6.319 4 C 0.319 3.681 5 N -0.563 5.563 6 C 0.140 3.860 7 C -0.204 4.204 8 C -0.019 4.019 9 C -0.196 4.196 10 C 0.178 3.822 11 N -0.682 5.682 12 C 0.518 3.482 13 O -0.537 6.537 14 C 0.501 3.499 15 O -0.551 6.551 16 N -0.687 5.687 17 C 0.142 3.858 18 C -0.017 4.017 19 C -0.536 4.536 20 H 0.035 0.965 21 C 0.007 3.993 22 N -0.948 5.948 23 Si 0.953 3.047 24 H -0.266 1.266 25 H -0.285 1.285 26 H -0.240 1.240 27 H 0.100 0.900 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.189 0.811 33 H 0.173 0.827 34 H 0.169 0.831 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.414 0.586 38 H 0.418 0.582 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.037 0.963 42 H 0.034 0.966 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.790 -19.046 -22.348 34.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.008 4.008 3 O -0.226 6.226 4 C 0.140 3.860 5 N -0.287 5.287 6 C -0.016 4.016 7 C -0.224 4.224 8 C -0.044 4.044 9 C -0.200 4.200 10 C 0.056 3.944 11 N -0.334 5.334 12 C 0.298 3.702 13 O -0.415 6.415 14 C 0.281 3.719 15 O -0.430 6.430 16 N -0.339 5.339 17 C 0.019 3.981 18 C -0.055 4.055 19 C -0.574 4.574 20 H 0.054 0.946 21 C -0.190 4.190 22 N -0.587 5.587 23 Si 0.776 3.224 24 H -0.191 1.191 25 H -0.211 1.211 26 H -0.163 1.163 27 H 0.118 0.882 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.206 0.794 33 H 0.191 0.809 34 H 0.186 0.814 35 H 0.117 0.883 36 H 0.093 0.907 37 H 0.250 0.750 38 H 0.255 0.745 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 18.056 -19.585 -22.256 34.712 hybrid contribution -0.271 0.982 0.247 1.048 sum 17.785 -18.603 -22.009 33.864 Atomic orbital electron populations 1.21842 0.91983 1.04122 1.02905 1.22713 0.95589 0.80169 1.02345 1.86277 1.17182 1.31882 1.87307 1.19911 0.84312 0.90043 0.91690 1.67437 1.07941 1.32923 1.20354 1.23123 0.88556 0.99370 0.90529 1.22392 1.03203 0.92195 1.04588 1.21813 0.90490 1.01720 0.90406 1.19849 0.95634 0.91832 1.12657 1.20091 0.96714 0.95370 0.82258 1.45799 1.45724 1.29818 1.12101 1.19871 0.80147 0.81927 0.88257 1.90749 1.57632 1.47600 1.45484 1.20349 0.80369 0.81738 0.89403 1.90737 1.58219 1.47668 1.46329 1.45970 1.45389 1.30080 1.12424 1.21284 0.97305 0.98648 0.80861 1.19692 0.95388 0.94174 0.96220 1.21196 1.28343 1.13969 0.93931 0.94623 1.25999 0.95546 0.98966 0.98530 1.70058 1.34489 1.31661 1.22542 0.85618 0.79870 0.77482 0.79436 1.19127 1.21121 1.16345 0.88158 0.92619 0.91737 0.91283 0.91926 0.79443 0.80948 0.81356 0.88336 0.90655 0.74968 0.74497 0.92374 0.92205 0.94503 0.94762 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 10.28 71.98 0.74 -1.44 16 2 C 0.07 1.14 6.03 71.98 0.43 1.57 16 3 O -0.32 -6.84 9.37 -89.93 -0.84 -7.68 16 4 C 0.32 6.24 7.47 84.78 0.63 6.87 16 5 N -0.56 -9.92 9.22 -308.93 -2.85 -12.77 16 6 C 0.14 1.53 11.18 84.64 0.95 2.48 16 7 C -0.20 -1.62 10.11 22.37 0.23 -1.40 16 8 C -0.02 -0.19 9.81 22.45 0.22 0.03 16 9 C -0.20 -3.17 5.28 -19.67 -0.10 -3.28 16 10 C 0.18 3.25 5.48 85.63 0.47 3.72 16 11 N -0.68 -15.43 5.54 -468.15 -2.59 -18.03 16 12 C 0.52 14.63 7.89 87.27 0.69 15.31 16 13 O -0.54 -16.69 16.48 -3.23 -0.05 -16.74 16 14 C 0.50 16.52 7.89 87.27 0.69 17.21 16 15 O -0.55 -20.65 16.48 -3.23 -0.05 -20.71 16 16 N -0.69 -23.19 5.55 -464.40 -2.58 -25.77 16 17 C 0.14 5.71 5.61 86.38 0.48 6.19 16 18 C -0.02 -0.76 4.15 29.85 0.12 -0.64 16 19 C -0.54 -30.34 9.66 25.60 0.25 -30.10 16 20 H 0.04 2.23 7.99 -2.91 -0.02 2.21 16 21 C 0.01 0.41 5.47 84.65 0.46 0.87 16 22 N -0.95 -58.83 13.96 21.45 0.30 -58.53 16 23 Si 0.95 42.91 27.47 68.60 1.88 44.80 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 26 H -0.24 -9.80 6.54 99.48 0.65 -9.15 16 27 H 0.10 0.98 8.14 -2.39 -0.02 0.97 16 28 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.07 1.09 8.10 -2.39 -0.02 1.07 16 31 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 32 H 0.19 0.84 8.06 -2.91 -0.02 0.82 16 33 H 0.17 0.25 8.06 -2.91 -0.02 0.22 16 34 H 0.17 0.89 8.06 -2.91 -0.02 0.87 16 35 H 0.10 1.51 8.03 -2.38 -0.02 1.49 16 36 H 0.08 1.57 7.87 -2.39 -0.02 1.55 16 37 H 0.41 9.28 7.94 -92.71 -0.74 8.54 16 38 H 0.42 12.71 7.94 -92.71 -0.74 11.97 16 39 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 40 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 41 H 0.04 1.58 7.20 -2.39 -0.02 1.56 16 42 H 0.03 1.45 7.57 -2.39 -0.02 1.43 16 43 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 Total: -1.00 -73.79 375.07 -1.00 -74.79 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: -0.48 Total: 23.23 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: 6.26 Total: 17.41 kcal Atomic # 7 Polarization: -107.38 SS G_CDS: -7.72 Total: -115.10 kcal Atomic # 8 Polarization: -44.18 SS G_CDS: -0.95 Total: -45.13 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.88 Total: 44.80 kcal Total: -73.79 -1.00 -74.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323096267.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.654 kcal (2) G-P(sol) polarization free energy of solvation -73.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds