Wall clock time and date at job start Tue Mar 31 2020 13:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 120.00198 * 2 1 4 4 C 1.50699 * 109.47487 * 270.00246 * 3 2 1 5 5 C 1.41376 * 126.80233 * 94.99386 * 4 3 2 6 6 C 1.35458 * 103.98459 * 180.02562 * 5 4 3 7 7 O 1.34044 * 106.44562 * 0.02562 * 6 5 4 8 8 N 1.20929 * 111.56331 * 359.70900 * 7 6 5 9 9 C 1.34775 * 120.00052 * 180.02562 * 2 1 3 10 10 O 1.21347 * 120.00118 * 185.00854 * 9 2 1 11 11 C 1.49454 * 119.99743 * 5.00598 * 9 2 1 12 12 O 1.21345 * 119.99954 * 275.16009 * 11 9 2 13 13 N 1.34770 * 119.99859 * 95.16125 * 11 9 2 14 14 C 1.46931 * 120.63483 * 354.95013 * 13 11 9 15 15 C 1.53194 * 108.77608 * 126.36729 * 14 13 11 16 16 C 1.53041 * 109.31050 * 54.63750 * 15 14 13 17 17 C 1.53039 * 109.53978 * 298.63569 * 16 15 14 18 18 H 1.09004 * 109.49614 * 301.41075 * 17 16 15 19 19 C 1.50696 * 109.52268 * 181.33340 * 17 16 15 20 20 H 1.08003 * 120.00195 * 0.14050 * 19 17 16 21 21 C 1.37884 * 120.00196 * 180.14444 * 19 17 16 22 22 N 1.31518 * 119.99246 * 359.97438 * 21 19 17 23 23 Si 1.86791 * 120.00328 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47443 * 89.99891 * 23 21 19 25 25 H 1.48501 * 109.47377 * 209.99993 * 23 21 19 26 26 H 1.48505 * 109.47254 * 330.00055 * 23 21 19 27 27 C 1.46932 * 120.63139 * 174.92876 * 13 11 9 28 28 H 1.08999 * 109.47102 * 264.80645 * 1 2 3 29 29 H 1.09001 * 109.46618 * 24.80661 * 1 2 3 30 30 H 1.08993 * 109.47109 * 144.80453 * 1 2 3 31 31 H 1.09007 * 109.46756 * 30.00140 * 3 2 1 32 32 H 1.09005 * 109.47255 * 149.99465 * 3 2 1 33 33 H 1.07995 * 128.00797 * 359.97438 * 5 4 3 34 34 H 1.07995 * 126.77572 * 180.02562 * 6 5 4 35 35 H 1.08999 * 109.58782 * 246.16096 * 14 13 11 36 36 H 1.09002 * 109.58108 * 6.58468 * 14 13 11 37 37 H 1.08998 * 109.49469 * 174.58909 * 15 14 13 38 38 H 1.08994 * 109.50054 * 294.68787 * 15 14 13 39 39 H 1.08996 * 109.46176 * 178.61056 * 16 15 14 40 40 H 1.09002 * 109.44702 * 58.64985 * 16 15 14 41 41 H 0.97006 * 119.98997 * 180.02562 * 22 21 19 42 42 H 1.09001 * 109.58288 * 353.41841 * 27 13 11 43 43 H 1.08997 * 109.58778 * 113.69743 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 6 1.6598 2.5927 -2.1863 6 6 2.2992 2.6538 -3.3789 7 8 3.3685 1.8519 -3.2777 8 7 3.4375 1.3389 -2.1848 9 6 2.1389 -1.1672 -0.0005 10 8 3.3489 -1.1692 0.0912 11 6 1.3959 -2.4589 -0.1140 12 8 0.9335 -2.9821 0.8784 13 7 1.2395 -3.0427 -1.3186 14 6 1.6961 -2.3691 -2.5420 15 6 2.6208 -3.3178 -3.3114 16 6 1.8956 -4.6429 -3.5568 17 6 1.5463 -5.2913 -2.2153 18 1 2.4586 -5.4546 -1.6416 19 6 0.8613 -6.6117 -2.4574 20 1 0.6937 -6.9560 -3.4673 21 6 0.4486 -7.3802 -1.3896 22 7 0.6531 -6.9611 -0.1599 23 14 -0.4010 -9.0164 -1.6896 24 1 0.6152 -10.0973 -1.7550 25 1 -1.3476 -9.2936 -0.5795 26 1 -1.1462 -8.9594 -2.9729 27 6 0.6095 -4.3651 -1.4336 28 1 -0.3633 -0.0930 1.0234 29 1 -0.3632 0.9329 -0.4312 30 1 -0.3633 -0.8397 -0.5923 31 1 1.6084 2.0283 0.5139 32 1 3.1500 1.1384 0.5139 33 1 0.7560 3.1039 -1.8894 34 1 2.0054 3.2340 -4.2411 35 1 0.8363 -2.1145 -3.1616 36 1 2.2405 -1.4623 -2.2783 37 1 2.8899 -2.8678 -4.2670 38 1 3.5230 -3.4996 -2.7274 39 1 2.5423 -5.3109 -4.1256 40 1 0.9807 -4.4571 -4.1195 41 1 0.3630 -7.5020 0.5913 42 1 0.4368 -4.7753 -0.4385 43 1 -0.3402 -4.2729 -1.9606 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328193783.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:58 Heat of formation + Delta-G solvation = 4.033437 kcal Electronic energy + Delta-G solvation = -28271.944671 eV Core-core repulsion = 24321.203459 eV Total energy + Delta-G solvation = -3950.741212 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.16313 -40.56744 -38.54396 -36.76710 -36.18045 -34.07061 -33.41401 -31.92738 -31.83813 -29.90720 -28.76891 -26.97783 -25.35228 -25.03055 -23.43233 -22.67381 -21.87701 -21.15014 -19.55066 -18.45308 -18.05081 -17.77813 -17.48113 -16.68027 -16.23231 -16.18706 -15.44003 -15.05481 -14.61885 -14.31583 -14.18910 -13.76278 -13.74490 -13.44977 -13.22605 -13.03828 -12.78016 -12.67175 -12.63049 -12.39505 -12.14813 -11.98190 -11.41540 -11.06485 -11.03399 -10.94554 -10.54499 -10.51047 -10.41739 -10.26058 -9.96341 -9.90418 -9.27526 -9.17151 -9.05146 -8.86346 -8.46517 -7.93475 -6.02300 -4.11251 1.28037 1.78922 2.35391 2.64041 3.00014 3.05266 3.30385 3.37486 3.39480 3.69990 3.90920 4.24817 4.40833 4.50935 4.85301 4.89122 4.90786 5.07126 5.24990 5.28440 5.30674 5.36024 5.42758 5.45486 5.57532 5.63475 5.70695 5.93177 6.14590 6.17118 6.28479 6.53856 6.62251 6.79784 6.93004 6.98474 7.01901 7.10496 7.55606 7.81044 7.88447 7.91082 8.05315 8.07609 8.31239 8.49361 8.92883 9.54575 11.03321 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021073 B = 0.003642 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.392396 B = 7686.032220 C = 8404.880929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.606 5.606 3 C 0.192 3.808 4 C -0.011 4.011 5 C -0.226 4.226 6 C -0.064 4.064 7 O 0.107 5.893 8 N -0.337 5.337 9 C 0.519 3.481 10 O -0.501 6.501 11 C 0.508 3.492 12 O -0.511 6.511 13 N -0.585 5.585 14 C 0.110 3.890 15 C -0.133 4.133 16 C -0.110 4.110 17 C 0.038 3.962 18 H 0.031 0.969 19 C -0.520 4.520 20 H 0.060 0.940 21 C 0.062 3.938 22 N -0.881 5.881 23 Si 0.894 3.106 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.274 1.274 27 C 0.112 3.888 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.171 0.829 34 H 0.216 0.784 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.264 0.736 42 H 0.125 0.875 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.897 22.604 -5.413 23.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.344 5.344 3 C 0.069 3.931 4 C -0.171 4.171 5 C -0.247 4.247 6 C -0.145 4.145 7 O 0.036 5.964 8 N -0.037 5.037 9 C 0.302 3.698 10 O -0.373 6.373 11 C 0.289 3.711 12 O -0.386 6.386 13 N -0.318 5.318 14 C -0.013 4.013 15 C -0.171 4.171 16 C -0.147 4.147 17 C 0.019 3.981 18 H 0.049 0.951 19 C -0.559 4.559 20 H 0.078 0.922 21 C -0.141 4.141 22 N -0.519 5.519 23 Si 0.722 3.278 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.199 1.199 27 C -0.008 4.008 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.189 0.811 34 H 0.232 0.768 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.142 0.858 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.467 21.399 -4.427 21.857 hybrid contribution -1.294 -0.220 -0.167 1.323 sum -1.761 21.179 -4.594 21.743 Atomic orbital electron populations 1.21897 0.78182 1.03429 1.03013 1.47871 1.07593 1.04777 1.74137 1.19651 0.99619 0.85313 0.88556 1.24060 0.93464 0.99460 1.00095 1.22726 1.03902 1.04066 0.94053 1.26051 0.89559 0.97709 1.01170 1.84917 1.39566 1.44672 1.27203 1.74026 1.21527 1.15930 0.92241 1.20883 0.88092 0.84904 0.75948 1.90790 1.13159 1.86370 1.46972 1.19906 0.80783 0.85509 0.84929 1.90816 1.47723 1.64258 1.35849 1.48601 1.57751 1.21142 1.04331 1.21671 0.97890 0.95134 0.86611 1.21926 0.98851 0.97222 0.99082 1.21631 0.98735 0.94141 1.00224 1.18996 0.95707 0.92884 0.90502 0.95063 1.21062 1.39191 1.02789 0.92845 0.92205 1.25069 0.95756 0.98057 0.95177 1.69883 1.46143 1.37865 0.97968 0.86560 0.79435 0.83996 0.77818 1.20647 1.21164 1.19883 1.22475 0.94837 0.77238 1.06221 0.91377 0.90383 0.90838 0.87646 0.87752 0.81109 0.76784 0.91581 0.91736 0.92006 0.91757 0.92704 0.93089 0.92557 0.85759 0.93217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.81 10.23 59.85 0.61 1.42 16 2 N -0.61 -8.14 2.86 -183.46 -0.52 -8.66 16 3 C 0.19 2.06 6.01 -5.20 -0.03 2.03 16 4 C -0.01 -0.12 6.91 -82.10 -0.57 -0.68 16 5 C -0.23 -1.63 11.12 -39.38 -0.44 -2.07 16 6 C -0.06 -0.42 12.30 29.74 0.37 -0.06 16 7 O 0.11 1.15 11.20 17.16 0.19 1.34 16 8 N -0.34 -4.52 12.07 33.42 0.40 -4.11 16 9 C 0.52 9.62 5.45 -11.58 -0.06 9.56 16 10 O -0.50 -10.68 16.65 5.50 0.09 -10.59 16 11 C 0.51 10.88 5.69 -11.59 -0.07 10.81 16 12 O -0.51 -12.67 16.53 5.50 0.09 -12.58 16 13 N -0.58 -12.19 2.97 -173.27 -0.51 -12.70 16 14 C 0.11 1.92 6.36 -3.71 -0.02 1.89 16 15 C -0.13 -2.37 6.08 -26.61 -0.16 -2.53 16 16 C -0.11 -2.23 5.11 -26.69 -0.14 -2.36 16 17 C 0.04 0.95 2.25 -91.66 -0.21 0.75 16 18 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 19 C -0.52 -14.03 8.57 -34.44 -0.29 -14.32 16 20 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 21 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 22 N -0.88 -25.66 11.39 55.43 0.63 -25.03 16 23 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 27 C 0.11 2.69 5.39 -3.71 -0.02 2.67 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.52 8.03 -51.93 -0.42 0.10 16 30 H 0.07 0.89 6.99 -51.93 -0.36 0.53 16 31 H 0.11 0.70 8.07 -51.93 -0.42 0.28 16 32 H 0.10 1.30 7.36 -51.93 -0.38 0.92 16 33 H 0.17 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.22 0.44 8.06 -52.49 -0.42 0.02 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.06 1.11 6.31 -51.93 -0.33 0.78 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.12 3.49 5.15 -51.93 -0.27 3.22 16 43 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 360.51 15.07 5.43 5.43 Total: -1.00 -35.30 360.51 -6.29 -41.59 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -5.95 Total: 0.47 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: -1.12 Total: 8.73 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: 0.00 Total: -50.50 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: 0.37 Total: -21.82 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.30 -6.29 -41.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328193783.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.622 kcal (2) G-P(sol) polarization free energy of solvation -35.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds