Wall clock time and date at job start Tue Mar 31 2020 13:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 120.00198 * 2 1 4 4 C 1.50699 * 109.47487 * 270.00246 * 3 2 1 5 5 C 1.41376 * 126.80233 * 94.99386 * 4 3 2 6 6 C 1.35458 * 103.98459 * 180.02562 * 5 4 3 7 7 O 1.34044 * 106.44562 * 0.02562 * 6 5 4 8 8 N 1.20929 * 111.56331 * 359.70900 * 7 6 5 9 9 C 1.34775 * 120.00052 * 180.02562 * 2 1 3 10 10 O 1.21347 * 120.00118 * 185.00854 * 9 2 1 11 11 C 1.49454 * 119.99743 * 5.00598 * 9 2 1 12 12 O 1.21345 * 119.99954 * 275.16009 * 11 9 2 13 13 N 1.34770 * 119.99859 * 95.16125 * 11 9 2 14 14 C 1.46931 * 120.63483 * 354.95013 * 13 11 9 15 15 C 1.53194 * 108.77608 * 126.36729 * 14 13 11 16 16 C 1.53041 * 109.31050 * 54.63750 * 15 14 13 17 17 C 1.53039 * 109.53978 * 298.63569 * 16 15 14 18 18 H 1.09004 * 109.49614 * 301.41075 * 17 16 15 19 19 C 1.50696 * 109.52268 * 181.33340 * 17 16 15 20 20 H 1.08003 * 120.00195 * 0.14050 * 19 17 16 21 21 C 1.37884 * 120.00196 * 180.14444 * 19 17 16 22 22 N 1.31518 * 119.99246 * 359.97438 * 21 19 17 23 23 Si 1.86791 * 120.00328 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47443 * 89.99891 * 23 21 19 25 25 H 1.48501 * 109.47377 * 209.99993 * 23 21 19 26 26 H 1.48505 * 109.47254 * 330.00055 * 23 21 19 27 27 C 1.46932 * 120.63139 * 174.92876 * 13 11 9 28 28 H 1.08999 * 109.47102 * 264.80645 * 1 2 3 29 29 H 1.09001 * 109.46618 * 24.80661 * 1 2 3 30 30 H 1.08993 * 109.47109 * 144.80453 * 1 2 3 31 31 H 1.09007 * 109.46756 * 30.00140 * 3 2 1 32 32 H 1.09005 * 109.47255 * 149.99465 * 3 2 1 33 33 H 1.07995 * 128.00797 * 359.97438 * 5 4 3 34 34 H 1.07995 * 126.77572 * 180.02562 * 6 5 4 35 35 H 1.08999 * 109.58782 * 246.16096 * 14 13 11 36 36 H 1.09002 * 109.58108 * 6.58468 * 14 13 11 37 37 H 1.08998 * 109.49469 * 174.58909 * 15 14 13 38 38 H 1.08994 * 109.50054 * 294.68787 * 15 14 13 39 39 H 1.08996 * 109.46176 * 178.61056 * 16 15 14 40 40 H 1.09002 * 109.44702 * 58.64985 * 16 15 14 41 41 H 0.97006 * 119.98997 * 180.02562 * 22 21 19 42 42 H 1.09001 * 109.58288 * 353.41841 * 27 13 11 43 43 H 1.08997 * 109.58778 * 113.69743 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 6 1.6598 2.5927 -2.1863 6 6 2.2992 2.6538 -3.3789 7 8 3.3685 1.8519 -3.2777 8 7 3.4375 1.3389 -2.1848 9 6 2.1389 -1.1672 -0.0005 10 8 3.3489 -1.1692 0.0912 11 6 1.3959 -2.4589 -0.1140 12 8 0.9335 -2.9821 0.8784 13 7 1.2395 -3.0427 -1.3186 14 6 1.6961 -2.3691 -2.5420 15 6 2.6208 -3.3178 -3.3114 16 6 1.8956 -4.6429 -3.5568 17 6 1.5463 -5.2913 -2.2153 18 1 2.4586 -5.4546 -1.6416 19 6 0.8613 -6.6117 -2.4574 20 1 0.6937 -6.9560 -3.4673 21 6 0.4486 -7.3802 -1.3896 22 7 0.6531 -6.9611 -0.1599 23 14 -0.4010 -9.0164 -1.6896 24 1 0.6152 -10.0973 -1.7550 25 1 -1.3476 -9.2936 -0.5795 26 1 -1.1462 -8.9594 -2.9729 27 6 0.6095 -4.3651 -1.4336 28 1 -0.3633 -0.0930 1.0234 29 1 -0.3632 0.9329 -0.4312 30 1 -0.3633 -0.8397 -0.5923 31 1 1.6084 2.0283 0.5139 32 1 3.1500 1.1384 0.5139 33 1 0.7560 3.1039 -1.8894 34 1 2.0054 3.2340 -4.2411 35 1 0.8363 -2.1145 -3.1616 36 1 2.2405 -1.4623 -2.2783 37 1 2.8899 -2.8678 -4.2670 38 1 3.5230 -3.4996 -2.7274 39 1 2.5423 -5.3109 -4.1256 40 1 0.9807 -4.4571 -4.1195 41 1 0.3630 -7.5020 0.5913 42 1 0.4368 -4.7753 -0.4385 43 1 -0.3402 -4.2729 -1.9606 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328193783.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:58 Heat of formation + Delta-G solvation = -21.091468 kcal Electronic energy + Delta-G solvation = -28273.034169 eV Core-core repulsion = 24321.203459 eV Total energy + Delta-G solvation = -3951.830710 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.87042 -42.07794 -40.08697 -38.51465 -37.34754 -35.38857 -34.85354 -33.62030 -32.55245 -31.74064 -29.71890 -28.23878 -27.13078 -26.62368 -24.27904 -23.91021 -23.58087 -22.05735 -21.12708 -19.89292 -19.16514 -18.66872 -18.60754 -18.21040 -18.00649 -17.60344 -16.65894 -16.40817 -16.18939 -15.84299 -15.45624 -15.37258 -15.02097 -14.63418 -14.46585 -14.30578 -14.28685 -13.96471 -13.82771 -13.69895 -13.45360 -13.15830 -12.90110 -12.80867 -12.63945 -12.34622 -12.26680 -12.12145 -11.96460 -11.75736 -11.32264 -11.15271 -11.02690 -10.62524 -10.54625 -10.48159 -10.15294 -9.69918 -8.13031 -6.30618 0.60804 0.86547 1.00347 1.28998 1.42492 1.42703 1.54079 1.58853 2.32670 2.42611 2.57910 3.04691 3.16120 3.25417 3.63959 3.79262 3.97461 4.07073 4.16048 4.23613 4.31950 4.40781 4.41999 4.56525 4.59796 4.63182 4.66113 4.70522 4.78426 4.86040 4.96616 5.09095 5.15160 5.15547 5.23477 5.24094 5.34738 5.54677 5.77885 5.81329 5.90729 6.21974 6.27403 6.54058 6.74829 6.84303 7.40119 7.45380 8.91286 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021073 B = 0.003642 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.392396 B = 7686.032220 C = 8404.880929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.588 5.588 3 C 0.189 3.811 4 C -0.028 4.028 5 C -0.218 4.218 6 C -0.052 4.052 7 O 0.091 5.909 8 N -0.392 5.392 9 C 0.523 3.477 10 O -0.541 6.541 11 C 0.501 3.499 12 O -0.558 6.558 13 N -0.585 5.585 14 C 0.112 3.888 15 C -0.127 4.127 16 C -0.101 4.101 17 C 0.035 3.965 18 H -0.020 1.020 19 C -0.533 4.533 20 H 0.068 0.932 21 C 0.009 3.991 22 N -0.918 5.918 23 Si 0.962 3.038 24 H -0.279 1.279 25 H -0.287 1.287 26 H -0.258 1.258 27 C 0.125 3.875 28 H 0.072 0.928 29 H 0.130 0.870 30 H 0.054 0.946 31 H 0.156 0.844 32 H 0.078 0.922 33 H 0.209 0.791 34 H 0.261 0.739 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.104 0.896 38 H 0.037 0.963 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.261 0.739 42 H 0.081 0.919 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.887 25.394 -8.023 26.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.323 5.323 3 C 0.067 3.933 4 C -0.187 4.187 5 C -0.240 4.240 6 C -0.133 4.133 7 O 0.023 5.977 8 N -0.095 5.095 9 C 0.305 3.695 10 O -0.417 6.417 11 C 0.283 3.717 12 O -0.437 6.437 13 N -0.317 5.317 14 C -0.009 4.009 15 C -0.165 4.165 16 C -0.138 4.138 17 C 0.015 3.985 18 H -0.002 1.002 19 C -0.571 4.571 20 H 0.086 0.914 21 C -0.190 4.190 22 N -0.557 5.557 23 Si 0.787 3.213 24 H -0.205 1.205 25 H -0.213 1.213 26 H -0.182 1.182 27 C 0.004 3.996 28 H 0.091 0.909 29 H 0.148 0.852 30 H 0.073 0.927 31 H 0.174 0.826 32 H 0.097 0.903 33 H 0.226 0.774 34 H 0.277 0.723 35 H 0.119 0.881 36 H 0.087 0.913 37 H 0.122 0.878 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.070 0.930 42 H 0.099 0.901 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.476 24.254 -7.089 25.390 hybrid contribution -0.682 -0.983 0.612 1.344 sum -3.158 23.271 -6.476 24.361 Atomic orbital electron populations 1.22196 0.75933 1.05368 1.03586 1.47899 1.08942 1.04052 1.71382 1.19974 0.99186 0.84649 0.89493 1.24225 0.94068 1.00492 0.99892 1.23126 1.04563 1.03052 0.93257 1.26983 0.87634 0.96193 1.02508 1.84856 1.41170 1.45375 1.26344 1.74052 1.23637 1.18169 0.93605 1.20286 0.87327 0.85269 0.76583 1.90775 1.14451 1.86810 1.49639 1.20557 0.80186 0.86625 0.84331 1.90773 1.49769 1.65815 1.37295 1.48597 1.57260 1.20144 1.05716 1.21892 0.99090 0.94666 0.85301 1.21890 0.97494 0.96322 1.00760 1.21504 0.99911 0.95046 0.97370 1.18952 0.93500 0.93405 0.92609 1.00170 1.21468 1.38771 1.03749 0.93139 0.91395 1.25936 0.96503 1.01746 0.94804 1.70089 1.47494 1.39214 0.98898 0.85488 0.78273 0.79354 0.78147 1.20469 1.21263 1.18170 1.21964 0.95237 0.78735 1.03665 0.90894 0.85204 0.92717 0.82596 0.90312 0.77429 0.72350 0.88140 0.91263 0.87802 0.94405 0.92514 0.91115 0.93018 0.90079 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.29 10.23 127.77 1.31 2.59 16 2 N -0.59 -15.04 2.86 -852.71 -2.44 -17.47 16 3 C 0.19 3.69 6.01 85.63 0.51 4.20 16 4 C -0.03 -0.54 6.91 43.58 0.30 -0.24 16 5 C -0.22 -2.15 11.12 22.40 0.25 -1.90 16 6 C -0.05 -0.48 12.30 67.18 0.83 0.35 16 7 O 0.09 1.79 11.20 71.59 0.80 2.59 16 8 N -0.39 -10.12 12.07 -49.56 -0.60 -10.72 16 9 C 0.52 19.88 5.45 87.27 0.48 20.36 16 10 O -0.54 -24.14 16.65 -3.24 -0.05 -24.20 16 11 C 0.50 22.39 5.69 87.27 0.50 22.89 16 12 O -0.56 -29.44 16.53 -3.23 -0.05 -29.49 16 13 N -0.58 -24.98 2.97 -820.47 -2.44 -27.41 16 14 C 0.11 3.76 6.36 86.36 0.55 4.31 16 15 C -0.13 -4.38 6.08 30.67 0.19 -4.19 16 16 C -0.10 -4.01 5.11 30.62 0.16 -3.85 16 17 C 0.03 1.78 2.25 -11.47 -0.03 1.76 16 18 H -0.02 -1.21 8.14 -2.38 -0.02 -1.23 16 19 C -0.53 -29.21 8.57 25.60 0.22 -28.99 16 20 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 21 C 0.01 0.53 5.30 84.66 0.45 0.98 16 22 N -0.92 -56.10 11.39 21.45 0.24 -55.86 16 23 Si 0.96 43.96 29.54 68.60 2.03 45.98 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 25 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 26 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 27 C 0.12 6.24 5.39 86.36 0.47 6.71 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.13 1.04 8.03 -2.39 -0.02 1.02 16 30 H 0.05 1.25 6.99 -2.39 -0.02 1.23 16 31 H 0.16 1.40 8.07 -2.38 -0.02 1.38 16 32 H 0.08 1.98 7.36 -2.38 -0.02 1.96 16 33 H 0.21 0.34 8.06 -2.91 -0.02 0.31 16 34 H 0.26 -0.40 8.06 -2.91 -0.02 -0.42 16 35 H 0.10 2.71 8.14 -2.39 -0.02 2.70 16 36 H 0.07 2.31 6.31 -2.39 -0.02 2.30 16 37 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 38 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 42 H 0.08 4.83 5.15 -2.39 -0.01 4.82 16 43 H 0.06 2.79 8.14 -2.39 -0.02 2.77 16 Total: -1.00 -85.66 360.51 4.69 -80.98 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 1.03 Total: 10.63 kcal Atomic # 6 Polarization: 18.80 SS G_CDS: 6.17 Total: 24.97 kcal Atomic # 7 Polarization: -106.24 SS G_CDS: -5.23 Total: -111.47 kcal Atomic # 8 Polarization: -51.79 SS G_CDS: 0.69 Total: -51.10 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -85.66 4.69 -80.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328193783.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.884 kcal (2) G-P(sol) polarization free energy of solvation -85.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds