Wall clock time and date at job start Tue Mar 31 2020 13:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 119.99938 * 2 1 4 4 C 1.50696 * 109.47686 * 270.00614 * 3 2 1 5 5 C 1.41378 * 126.80488 * 94.97630 * 4 3 2 6 6 C 1.35450 * 103.98832 * 179.97438 * 5 4 3 7 7 O 1.34038 * 106.44371 * 0.02562 * 6 5 4 8 8 N 1.20919 * 111.56933 * 359.97438 * 7 6 5 9 9 C 1.34777 * 120.00202 * 180.02562 * 2 1 3 10 10 O 1.21345 * 120.00314 * 174.94819 * 9 2 1 11 11 C 1.49455 * 119.99794 * 354.95269 * 9 2 1 12 12 O 1.21348 * 120.00191 * 85.04769 * 11 9 2 13 13 N 1.34775 * 119.99563 * 265.04327 * 11 9 2 14 14 C 1.46931 * 120.63157 * 354.84224 * 13 11 9 15 15 C 1.53193 * 108.77485 * 233.58594 * 14 13 11 16 16 C 1.53038 * 109.31219 * 305.36485 * 15 14 13 17 17 C 1.53041 * 109.54014 * 61.36740 * 16 15 14 18 18 H 1.09000 * 109.49485 * 58.58467 * 17 16 15 19 19 C 1.50701 * 109.50017 * 178.68167 * 17 16 15 20 20 H 1.07998 * 119.99864 * 359.97438 * 19 17 16 21 21 C 1.37873 * 120.00010 * 180.02562 * 19 17 16 22 22 N 1.31523 * 120.00046 * 359.97438 * 21 19 17 23 23 Si 1.86795 * 119.99969 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47421 * 59.99703 * 23 21 19 25 25 H 1.48505 * 109.47366 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47015 * 299.99799 * 23 21 19 27 27 C 1.46925 * 120.63012 * 174.56409 * 13 11 9 28 28 H 1.08997 * 109.47307 * 95.14040 * 1 2 3 29 29 H 1.09004 * 109.46639 * 215.13453 * 1 2 3 30 30 H 1.08990 * 109.47361 * 335.14096 * 1 2 3 31 31 H 1.09004 * 109.46954 * 149.99964 * 3 2 1 32 32 H 1.09005 * 109.46524 * 30.00797 * 3 2 1 33 33 H 1.08003 * 128.00199 * 359.97438 * 5 4 3 34 34 H 1.08001 * 126.77663 * 179.97438 * 6 5 4 35 35 H 1.08997 * 109.58873 * 353.37778 * 14 13 11 36 36 H 1.09002 * 109.58371 * 113.65727 * 14 13 11 37 37 H 1.08992 * 109.50030 * 65.31964 * 15 14 13 38 38 H 1.08998 * 109.49232 * 185.41634 * 15 14 13 39 39 H 1.08997 * 109.45948 * 181.38918 * 16 15 14 40 40 H 1.08998 * 109.46101 * 301.36169 * 16 15 14 41 41 H 0.96993 * 119.99636 * 180.02562 * 22 21 19 42 42 H 1.09000 * 109.58973 * 246.20300 * 27 13 11 43 43 H 1.08996 * 109.58804 * 6.62959 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7039 -1.4207 5 6 1.6593 2.5926 -2.1864 6 6 2.2994 2.6548 -3.3785 7 8 3.3693 1.8537 -3.2770 8 7 3.4352 1.3362 -2.1861 9 6 2.1389 -1.1672 -0.0005 10 8 3.3488 -1.1692 -0.0931 11 6 1.3960 -2.4590 0.1128 12 8 0.9362 -2.9837 -0.8801 13 7 1.2368 -3.0413 1.3178 14 6 1.8824 -2.4792 2.5120 15 6 2.6972 -3.5811 3.1968 16 6 1.7897 -4.7807 3.4787 17 6 1.2453 -5.3320 2.1589 18 1 2.0760 -5.6228 1.5159 19 6 0.3777 -6.5329 2.4350 20 1 0.2295 -6.8699 3.4503 21 6 -0.2259 -7.2019 1.3915 22 7 -0.0449 -6.7917 0.1550 23 14 -1.3018 -8.6900 1.7339 24 1 -2.4345 -8.2914 2.6075 25 1 -1.8296 -9.2245 0.4529 26 1 -0.4971 -9.7368 2.4135 27 6 0.4095 -4.2468 1.4633 28 1 -0.3634 -0.0921 -1.0235 29 1 -0.3633 -0.8405 0.5915 30 1 -0.3633 0.9323 0.4320 31 1 3.1499 1.1383 0.5139 32 1 1.6083 2.0283 0.5140 33 1 0.7553 3.1035 -1.8894 34 1 2.0052 3.2346 -4.2408 35 1 2.5438 -1.6635 2.2201 36 1 1.1214 -2.1053 3.1969 37 1 3.5142 -3.8884 2.5441 38 1 3.1030 -3.2034 4.1352 39 1 2.3611 -5.5565 3.9881 40 1 0.9591 -4.4670 4.1110 41 1 -0.4699 -7.2622 -0.5790 42 1 -0.4693 -4.0164 2.0655 43 1 0.0988 -4.5977 0.4792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328193784.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:01 Heat of formation + Delta-G solvation = 4.211432 kcal Electronic energy + Delta-G solvation = -27803.842755 eV Core-core repulsion = 23853.109261 eV Total energy + Delta-G solvation = -3950.733494 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.10953 -40.56301 -38.54508 -36.75192 -36.16977 -34.04731 -33.40498 -31.89750 -31.82756 -29.89034 -28.76024 -26.97405 -25.34894 -25.02594 -23.38633 -22.65254 -21.89365 -21.15054 -19.56306 -18.45879 -17.97594 -17.76020 -17.49623 -16.59294 -16.23653 -16.19600 -15.58844 -14.82221 -14.54940 -14.45587 -14.22766 -13.76446 -13.70698 -13.37014 -13.22770 -13.00600 -12.83209 -12.66686 -12.65299 -12.36062 -12.18202 -11.95393 -11.36786 -11.06213 -11.04430 -10.93062 -10.56496 -10.49027 -10.41322 -10.27057 -9.95513 -9.85382 -9.26373 -9.16914 -9.05598 -8.88647 -8.47619 -7.92361 -6.01962 -4.11386 1.33814 1.84309 2.34009 2.62919 3.01202 3.10626 3.30705 3.36867 3.37954 3.70753 3.95676 4.25960 4.40553 4.52044 4.87769 4.90001 4.93673 5.11269 5.24098 5.28020 5.32931 5.34648 5.42488 5.45141 5.59882 5.62821 5.75280 5.92234 6.14329 6.16041 6.27388 6.52788 6.60927 6.78750 6.92204 6.97558 7.01978 7.10085 7.54901 7.80714 7.88217 7.90565 8.04693 8.13523 8.31421 8.49513 8.92560 9.54413 11.03351 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022518 B = 0.003165 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.145073 B = 8845.084464 C = 9422.232886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.604 5.604 3 C 0.195 3.805 4 C -0.012 4.012 5 C -0.225 4.225 6 C -0.066 4.066 7 O 0.106 5.894 8 N -0.334 5.334 9 C 0.517 3.483 10 O -0.501 6.501 11 C 0.508 3.492 12 O -0.508 6.508 13 N -0.587 5.587 14 C 0.108 3.892 15 C -0.133 4.133 16 C -0.110 4.110 17 C 0.039 3.961 18 H 0.031 0.969 19 C -0.522 4.522 20 H 0.059 0.941 21 C 0.063 3.937 22 N -0.880 5.880 23 Si 0.894 3.106 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 C 0.111 3.889 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.172 0.828 34 H 0.215 0.785 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.265 0.735 42 H 0.050 0.950 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.126 22.231 0.106 22.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.342 5.342 3 C 0.072 3.928 4 C -0.172 4.172 5 C -0.247 4.247 6 C -0.147 4.147 7 O 0.035 5.965 8 N -0.034 5.034 9 C 0.300 3.700 10 O -0.374 6.374 11 C 0.288 3.712 12 O -0.382 6.382 13 N -0.321 5.321 14 C -0.016 4.016 15 C -0.171 4.171 16 C -0.148 4.148 17 C 0.020 3.980 18 H 0.050 0.950 19 C -0.560 4.560 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.517 5.517 23 Si 0.721 3.279 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.203 1.203 27 C -0.008 4.008 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.189 0.811 34 H 0.232 0.768 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.282 21.031 -0.481 21.075 hybrid contribution -1.454 -0.190 0.055 1.467 sum -0.172 20.841 -0.427 20.846 Atomic orbital electron populations 1.21907 0.78126 1.03590 1.02894 1.47878 1.07641 1.04743 1.73901 1.19705 0.99273 0.85185 0.88673 1.24060 0.93656 0.99341 1.00177 1.22720 1.03819 1.04108 0.94082 1.26043 0.89646 0.97857 1.01169 1.84908 1.39524 1.44552 1.27506 1.74026 1.21833 1.15361 0.92223 1.20898 0.88107 0.84936 0.76060 1.90802 1.13234 1.86360 1.46961 1.19914 0.80869 0.85420 0.84950 1.90834 1.47996 1.63826 1.35584 1.48598 1.48564 1.29345 1.05616 1.21704 0.96205 0.96226 0.87420 1.21927 0.98904 0.96728 0.99552 1.21636 0.97617 0.95392 1.00161 1.19055 0.95461 0.92435 0.91028 0.95046 1.21029 1.30172 1.11625 0.93204 0.92291 1.25069 0.96502 0.97366 0.95121 1.69881 1.43224 1.40133 0.98505 0.86633 0.80728 0.83026 0.77466 1.20244 1.21252 1.20261 1.22553 0.91714 0.80830 1.05719 0.91956 0.90483 0.90149 0.87970 0.87565 0.81091 0.76801 0.91465 0.91427 0.91797 0.91914 0.92756 0.93052 0.92516 0.93170 0.85842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 10.28 59.85 0.61 1.43 16 2 N -0.60 -8.10 2.86 -183.47 -0.52 -8.63 16 3 C 0.20 2.09 6.00 -5.20 -0.03 2.06 16 4 C -0.01 -0.14 6.91 -82.10 -0.57 -0.71 16 5 C -0.23 -1.87 11.12 -39.38 -0.44 -2.31 16 6 C -0.07 -0.51 12.30 29.74 0.37 -0.15 16 7 O 0.11 1.29 11.20 17.18 0.19 1.48 16 8 N -0.33 -4.98 12.07 33.42 0.40 -4.58 16 9 C 0.52 9.47 5.58 -11.58 -0.06 9.41 16 10 O -0.50 -10.51 16.51 5.50 0.09 -10.42 16 11 C 0.51 10.77 5.69 -11.58 -0.07 10.70 16 12 O -0.51 -12.80 16.52 5.50 0.09 -12.71 16 13 N -0.59 -11.86 2.97 -173.01 -0.51 -12.37 16 14 C 0.11 1.75 6.32 -3.71 -0.02 1.72 16 15 C -0.13 -2.24 6.08 -26.61 -0.16 -2.40 16 16 C -0.11 -2.18 5.10 -26.69 -0.14 -2.31 16 17 C 0.04 0.97 2.26 -91.43 -0.21 0.76 16 18 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 19 C -0.52 -13.93 8.56 -34.44 -0.29 -14.22 16 20 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 21 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 22 N -0.88 -25.53 11.41 55.43 0.63 -24.90 16 23 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 C 0.11 2.62 5.44 -3.49 -0.02 2.60 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.92 6.99 -51.93 -0.36 0.56 16 30 H 0.08 0.51 7.83 -51.93 -0.41 0.10 16 31 H 0.10 1.21 7.50 -51.93 -0.39 0.82 16 32 H 0.11 0.66 7.86 -51.93 -0.41 0.25 16 33 H 0.17 0.85 8.06 -52.48 -0.42 0.42 16 34 H 0.22 0.64 8.06 -52.49 -0.42 0.22 16 35 H 0.07 1.02 6.22 -51.93 -0.32 0.70 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.12 3.41 5.14 -51.93 -0.27 3.14 16 LS Contribution 360.17 15.07 5.43 5.43 Total: -1.00 -35.90 360.17 -6.27 -42.17 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -5.93 Total: 0.33 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: -1.12 Total: 8.20 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.00 Total: -50.47 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: 0.37 Total: -21.66 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.90 -6.27 -42.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328193784.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.378 kcal (2) G-P(sol) polarization free energy of solvation -35.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds