Wall clock time and date at job start Tue Mar 31 2020 13:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 119.99938 * 2 1 4 4 C 1.50696 * 109.47686 * 270.00614 * 3 2 1 5 5 C 1.41378 * 126.80488 * 94.97630 * 4 3 2 6 6 C 1.35450 * 103.98832 * 179.97438 * 5 4 3 7 7 O 1.34038 * 106.44371 * 0.02562 * 6 5 4 8 8 N 1.20919 * 111.56933 * 359.97438 * 7 6 5 9 9 C 1.34777 * 120.00202 * 180.02562 * 2 1 3 10 10 O 1.21345 * 120.00314 * 174.94819 * 9 2 1 11 11 C 1.49455 * 119.99794 * 354.95269 * 9 2 1 12 12 O 1.21348 * 120.00191 * 85.04769 * 11 9 2 13 13 N 1.34775 * 119.99563 * 265.04327 * 11 9 2 14 14 C 1.46931 * 120.63157 * 354.84224 * 13 11 9 15 15 C 1.53193 * 108.77485 * 233.58594 * 14 13 11 16 16 C 1.53038 * 109.31219 * 305.36485 * 15 14 13 17 17 C 1.53041 * 109.54014 * 61.36740 * 16 15 14 18 18 H 1.09000 * 109.49485 * 58.58467 * 17 16 15 19 19 C 1.50701 * 109.50017 * 178.68167 * 17 16 15 20 20 H 1.07998 * 119.99864 * 359.97438 * 19 17 16 21 21 C 1.37873 * 120.00010 * 180.02562 * 19 17 16 22 22 N 1.31523 * 120.00046 * 359.97438 * 21 19 17 23 23 Si 1.86795 * 119.99969 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47421 * 59.99703 * 23 21 19 25 25 H 1.48505 * 109.47366 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47015 * 299.99799 * 23 21 19 27 27 C 1.46925 * 120.63012 * 174.56409 * 13 11 9 28 28 H 1.08997 * 109.47307 * 95.14040 * 1 2 3 29 29 H 1.09004 * 109.46639 * 215.13453 * 1 2 3 30 30 H 1.08990 * 109.47361 * 335.14096 * 1 2 3 31 31 H 1.09004 * 109.46954 * 149.99964 * 3 2 1 32 32 H 1.09005 * 109.46524 * 30.00797 * 3 2 1 33 33 H 1.08003 * 128.00199 * 359.97438 * 5 4 3 34 34 H 1.08001 * 126.77663 * 179.97438 * 6 5 4 35 35 H 1.08997 * 109.58873 * 353.37778 * 14 13 11 36 36 H 1.09002 * 109.58371 * 113.65727 * 14 13 11 37 37 H 1.08992 * 109.50030 * 65.31964 * 15 14 13 38 38 H 1.08998 * 109.49232 * 185.41634 * 15 14 13 39 39 H 1.08997 * 109.45948 * 181.38918 * 16 15 14 40 40 H 1.08998 * 109.46101 * 301.36169 * 16 15 14 41 41 H 0.96993 * 119.99636 * 180.02562 * 22 21 19 42 42 H 1.09000 * 109.58973 * 246.20300 * 27 13 11 43 43 H 1.08996 * 109.58804 * 6.62959 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7039 -1.4207 5 6 1.6593 2.5926 -2.1864 6 6 2.2994 2.6548 -3.3785 7 8 3.3693 1.8537 -3.2770 8 7 3.4352 1.3362 -2.1861 9 6 2.1389 -1.1672 -0.0005 10 8 3.3488 -1.1692 -0.0931 11 6 1.3960 -2.4590 0.1128 12 8 0.9362 -2.9837 -0.8801 13 7 1.2368 -3.0413 1.3178 14 6 1.8824 -2.4792 2.5120 15 6 2.6972 -3.5811 3.1968 16 6 1.7897 -4.7807 3.4787 17 6 1.2453 -5.3320 2.1589 18 1 2.0760 -5.6228 1.5159 19 6 0.3777 -6.5329 2.4350 20 1 0.2295 -6.8699 3.4503 21 6 -0.2259 -7.2019 1.3915 22 7 -0.0449 -6.7917 0.1550 23 14 -1.3018 -8.6900 1.7339 24 1 -2.4345 -8.2914 2.6075 25 1 -1.8296 -9.2245 0.4529 26 1 -0.4971 -9.7368 2.4135 27 6 0.4095 -4.2468 1.4633 28 1 -0.3634 -0.0921 -1.0235 29 1 -0.3633 -0.8405 0.5915 30 1 -0.3633 0.9323 0.4320 31 1 3.1499 1.1383 0.5139 32 1 1.6083 2.0283 0.5140 33 1 0.7553 3.1035 -1.8894 34 1 2.0052 3.2346 -4.2408 35 1 2.5438 -1.6635 2.2201 36 1 1.1214 -2.1053 3.1969 37 1 3.5142 -3.8884 2.5441 38 1 3.1030 -3.2034 4.1352 39 1 2.3611 -5.5565 3.9881 40 1 0.9591 -4.4670 4.1110 41 1 -0.4699 -7.2622 -0.5790 42 1 -0.4693 -4.0164 2.0655 43 1 0.0988 -4.5977 0.4792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328193784.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:01 Heat of formation + Delta-G solvation = -21.793217 kcal Electronic energy + Delta-G solvation = -27804.970401 eV Core-core repulsion = 23853.109261 eV Total energy + Delta-G solvation = -3951.861140 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.91999 -42.04730 -40.05334 -38.46811 -37.33332 -35.35676 -34.89496 -33.58462 -32.60689 -31.67077 -29.71865 -28.22340 -27.11083 -26.57202 -24.27278 -23.93959 -23.53326 -22.12034 -21.11155 -19.85328 -19.09551 -18.79228 -18.60813 -18.20182 -17.86805 -17.68875 -16.68041 -16.46495 -16.00576 -15.86696 -15.45943 -15.31569 -14.94344 -14.67372 -14.43404 -14.32089 -14.24433 -13.97771 -13.86728 -13.61482 -13.45138 -13.12568 -12.85849 -12.78380 -12.61535 -12.32859 -12.28147 -12.15847 -11.88965 -11.69886 -11.35349 -11.11681 -10.98963 -10.61178 -10.55992 -10.51667 -10.16903 -9.64057 -8.11280 -6.29162 0.58850 0.89250 0.97545 1.25404 1.42592 1.44039 1.52492 1.61411 2.36947 2.43762 2.51930 3.08360 3.17464 3.24812 3.60614 3.89512 4.06159 4.10506 4.20835 4.24516 4.31829 4.40062 4.50135 4.51535 4.62887 4.65857 4.69595 4.75679 4.78969 4.80824 5.02538 5.14766 5.16773 5.20087 5.20693 5.27654 5.41003 5.57119 5.79073 5.84998 5.93520 6.25928 6.30528 6.55761 6.78871 6.86659 7.40030 7.41534 8.92301 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022518 B = 0.003165 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.145073 B = 8845.084464 C = 9422.232886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.586 5.586 3 C 0.191 3.809 4 C -0.030 4.030 5 C -0.220 4.220 6 C -0.059 4.059 7 O 0.083 5.917 8 N -0.396 5.396 9 C 0.522 3.478 10 O -0.538 6.538 11 C 0.501 3.499 12 O -0.563 6.563 13 N -0.585 5.585 14 C 0.105 3.895 15 C -0.128 4.128 16 C -0.103 4.103 17 C 0.035 3.965 18 H -0.022 1.022 19 C -0.533 4.533 20 H 0.067 0.933 21 C 0.009 3.991 22 N -0.918 5.918 23 Si 0.961 3.039 24 H -0.262 1.262 25 H -0.291 1.291 26 H -0.271 1.271 27 C 0.124 3.876 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.138 0.862 31 H 0.086 0.914 32 H 0.165 0.835 33 H 0.212 0.788 34 H 0.261 0.739 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.037 0.963 38 H 0.109 0.891 39 H 0.053 0.947 40 H 0.071 0.929 41 H 0.260 0.740 42 H 0.063 0.937 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.849 25.274 2.287 25.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.321 5.321 3 C 0.070 3.930 4 C -0.190 4.190 5 C -0.241 4.241 6 C -0.139 4.139 7 O 0.016 5.984 8 N -0.100 5.100 9 C 0.305 3.695 10 O -0.414 6.414 11 C 0.283 3.717 12 O -0.442 6.442 13 N -0.317 5.317 14 C -0.017 4.017 15 C -0.166 4.166 16 C -0.140 4.140 17 C 0.016 3.984 18 H -0.004 1.004 19 C -0.572 4.572 20 H 0.085 0.915 21 C -0.191 4.191 22 N -0.556 5.556 23 Si 0.786 3.214 24 H -0.186 1.186 25 H -0.217 1.217 26 H -0.196 1.196 27 C 0.003 3.997 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.156 0.844 31 H 0.105 0.895 32 H 0.182 0.818 33 H 0.229 0.771 34 H 0.277 0.723 35 H 0.099 0.901 36 H 0.125 0.875 37 H 0.056 0.944 38 H 0.127 0.873 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.452 24.137 1.746 24.204 hybrid contribution -0.931 -1.057 -0.660 1.555 sum -1.383 23.080 1.086 23.147 Atomic orbital electron populations 1.22186 0.76044 1.05961 1.02777 1.47901 1.08889 1.04085 1.71228 1.20138 0.99497 0.84636 0.88761 1.24490 0.93884 0.99979 1.00611 1.23185 1.04514 1.03170 0.93272 1.27023 0.87829 0.96376 1.02692 1.84834 1.41325 1.45430 1.26829 1.74042 1.24431 1.17860 0.93682 1.20284 0.87367 0.85211 0.76667 1.90790 1.14415 1.86766 1.49432 1.20580 0.80241 0.86514 0.84359 1.90792 1.50488 1.65536 1.37376 1.48612 1.47955 1.28207 1.06966 1.22040 0.97270 0.96147 0.86232 1.21908 0.97608 0.95777 1.01268 1.21517 0.98677 0.96515 0.97314 1.19017 0.93732 0.92798 0.92883 1.00358 1.21461 1.29880 1.12367 0.93473 0.91458 1.25934 0.97977 1.00343 0.94797 1.70099 1.44549 1.41500 0.99473 0.85571 0.79241 0.79417 0.77201 1.18626 1.21705 1.19639 1.22030 0.92385 0.82065 1.03193 0.92688 0.92135 0.84370 0.89526 0.81765 0.77149 0.72319 0.90134 0.87509 0.94387 0.87254 0.92781 0.91026 0.93122 0.91904 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.32 10.28 127.77 1.31 2.64 16 2 N -0.59 -14.72 2.86 -852.74 -2.44 -17.16 16 3 C 0.19 3.60 6.00 85.63 0.51 4.11 16 4 C -0.03 -0.68 6.91 43.58 0.30 -0.38 16 5 C -0.22 -2.88 11.12 22.40 0.25 -2.64 16 6 C -0.06 -0.77 12.30 67.18 0.83 0.06 16 7 O 0.08 2.02 11.20 71.65 0.80 2.83 16 8 N -0.40 -11.97 12.07 -49.57 -0.60 -12.56 16 9 C 0.52 19.40 5.58 87.27 0.49 19.89 16 10 O -0.54 -23.33 16.51 -3.23 -0.05 -23.38 16 11 C 0.50 22.12 5.69 87.27 0.50 22.62 16 12 O -0.56 -30.40 16.52 -3.24 -0.05 -30.46 16 13 N -0.58 -24.04 2.97 -819.63 -2.43 -26.47 16 14 C 0.10 3.18 6.32 86.36 0.55 3.73 16 15 C -0.13 -4.08 6.08 30.67 0.19 -3.89 16 16 C -0.10 -3.94 5.10 30.62 0.16 -3.78 16 17 C 0.03 1.77 2.26 -11.32 -0.03 1.75 16 18 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16 19 C -0.53 -28.98 8.56 25.60 0.22 -28.76 16 20 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 21 C 0.01 0.49 5.30 84.65 0.45 0.94 16 22 N -0.92 -56.04 11.41 21.45 0.24 -55.80 16 23 Si 0.96 43.79 29.54 68.60 2.03 45.82 16 24 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 25 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 27 C 0.12 6.06 5.44 86.51 0.47 6.53 16 28 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 1.36 6.99 -2.38 -0.02 1.34 16 30 H 0.14 0.96 7.83 -2.39 -0.02 0.95 16 31 H 0.09 1.94 7.50 -2.38 -0.02 1.92 16 32 H 0.16 1.12 7.86 -2.38 -0.02 1.10 16 33 H 0.21 0.88 8.06 -2.91 -0.02 0.85 16 34 H 0.26 0.51 8.06 -2.91 -0.02 0.49 16 35 H 0.08 2.30 6.22 -2.39 -0.01 2.28 16 36 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 41 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 42 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 43 H 0.08 4.60 5.14 -2.39 -0.01 4.59 16 Total: -1.00 -88.54 360.17 4.72 -83.83 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 1.03 Total: 10.53 kcal Atomic # 6 Polarization: 16.63 SS G_CDS: 6.19 Total: 22.82 kcal Atomic # 7 Polarization: -106.77 SS G_CDS: -5.22 Total: -111.99 kcal Atomic # 8 Polarization: -51.71 SS G_CDS: 0.70 Total: -51.01 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -88.54 4.72 -83.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328193784.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.032 kcal (2) G-P(sol) polarization free energy of solvation -88.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds