Wall clock time and date at job start Tue Mar 31 2020 13:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46501 * 120.00267 * 2 1 4 4 C 1.53000 * 109.46636 * 269.99928 * 3 2 1 5 5 C 1.53009 * 109.46928 * 180.02562 * 4 3 2 6 6 N 1.46899 * 109.46847 * 179.97438 * 5 4 3 7 7 C 1.34780 * 119.99761 * 179.97438 * 2 1 3 8 8 O 1.21358 * 120.00104 * 181.00989 * 7 2 1 9 9 C 1.49318 * 120.00239 * 1.01029 * 7 2 1 10 10 O 1.21396 * 119.99788 * 4.06767 * 9 7 2 11 11 N 1.34770 * 120.00476 * 184.07030 * 9 7 2 12 12 C 1.39743 * 120.00484 * 173.26390 * 11 9 7 13 13 C 1.38990 * 120.00534 * 330.88105 * 12 11 9 14 14 C 1.37973 * 119.99410 * 180.02562 * 13 12 11 15 15 C 1.38941 * 120.00254 * 359.97438 * 14 13 12 16 16 O 1.35758 * 119.98937 * 179.97438 * 15 14 13 17 17 C 1.34798 * 117.00206 * 5.73083 * 16 15 14 18 18 H 1.08001 * 119.99759 * 354.91623 * 17 16 15 19 19 C 1.38654 * 120.00002 * 174.91202 * 17 16 15 20 20 N 1.31553 * 119.99808 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99722 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46974 * 90.00537 * 21 19 17 23 23 H 1.48502 * 109.46836 * 209.99982 * 21 19 17 24 24 H 1.48496 * 109.47315 * 329.99860 * 21 19 17 25 25 C 1.38930 * 120.01501 * 0.25693 * 15 14 13 26 26 C 1.37973 * 120.00550 * 359.48919 * 25 15 14 27 27 H 1.09004 * 109.47331 * 263.26306 * 1 2 3 28 28 H 1.08999 * 109.46964 * 23.26438 * 1 2 3 29 29 H 1.09002 * 109.47646 * 143.26126 * 1 2 3 30 30 H 1.08994 * 109.46880 * 29.99269 * 3 2 1 31 31 H 1.08996 * 109.47150 * 149.99706 * 3 2 1 32 32 H 1.09006 * 109.47135 * 299.99627 * 4 3 2 33 33 H 1.08996 * 109.47532 * 60.00012 * 4 3 2 34 34 H 1.08999 * 109.46449 * 299.99797 * 5 4 3 35 35 H 1.08996 * 109.47097 * 59.99633 * 5 4 3 36 36 H 1.00901 * 110.99508 * 179.97438 * 6 5 4 37 37 H 1.00895 * 110.99925 * 303.94887 * 6 5 4 38 38 H 0.97002 * 119.99504 * 353.27131 * 11 9 7 39 39 H 1.08005 * 120.00703 * 359.97438 * 13 12 11 40 40 H 1.07995 * 119.99603 * 179.97438 * 14 13 12 41 41 H 0.97011 * 119.99690 * 180.02562 * 20 19 17 42 42 H 1.07996 * 119.99692 * 179.72137 * 25 15 14 43 43 H 1.08000 * 120.00200 * 180.23236 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7102 -1.4425 5 6 3.2182 3.0350 -1.4426 6 7 3.4635 3.4586 -2.8276 7 6 2.1388 -1.1673 0.0005 8 8 3.3522 -1.1674 0.0190 9 6 1.3924 -2.4603 -0.0217 10 8 0.1820 -2.4609 -0.1148 11 7 2.0623 -3.6267 0.0616 12 6 1.3601 -4.8288 0.1827 13 6 0.1169 -4.8480 0.8039 14 6 -0.5760 -6.0351 0.9238 15 6 -0.0312 -7.2111 0.4232 16 8 -0.7130 -8.3791 0.5418 17 6 -1.9608 -8.3108 1.0472 18 1 -2.3446 -7.3697 1.4126 19 6 -2.7516 -9.4486 1.0976 20 7 -2.2839 -10.5949 0.6528 21 14 -4.4811 -9.3537 1.7972 22 1 -5.4392 -9.0378 0.7075 23 1 -4.8398 -10.6584 2.4090 24 1 -4.5391 -8.2896 2.8313 25 6 1.2136 -7.1931 -0.1934 26 6 1.9045 -6.0054 -0.3183 27 1 -0.3634 -0.1206 1.0206 28 1 -0.3633 0.9441 -0.4059 29 1 -0.3634 -0.8235 -0.6147 30 1 1.6084 2.0283 0.5137 31 1 3.1499 1.1383 0.5139 32 1 3.0416 0.9505 -1.9563 33 1 1.5001 1.8406 -1.9564 34 1 2.6294 3.7948 -0.9287 35 1 4.1705 2.9042 -0.9289 36 1 3.9679 4.3321 -2.8546 37 1 3.9522 2.7424 -3.3436 38 1 3.0320 -3.6318 0.0376 39 1 -0.3064 -3.9339 1.1935 40 1 -1.5418 -6.0501 1.4069 41 1 -2.8373 -11.3909 0.6878 42 1 1.6387 -8.1081 -0.5784 43 1 2.8705 -5.9908 -0.8011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333517678.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:25 Heat of formation + Delta-G solvation = -50.810204 kcal Electronic energy + Delta-G solvation = -26034.918778 eV Core-core repulsion = 22081.799367 eV Total energy + Delta-G solvation = -3953.119411 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.07604 -39.43620 -38.47525 -36.96418 -36.59935 -35.29744 -33.95095 -32.22988 -31.12469 -30.28807 -28.41774 -27.10152 -26.13633 -25.27838 -23.47434 -22.38540 -21.85176 -20.93960 -19.83958 -18.33738 -17.84450 -17.32161 -17.04055 -16.56398 -16.23053 -16.08177 -15.55661 -15.32199 -14.77803 -14.59279 -14.51975 -14.05763 -13.83442 -13.71530 -13.49781 -13.20195 -13.01773 -12.91259 -12.65246 -12.59966 -12.41873 -11.87855 -11.84763 -11.64400 -11.57634 -11.29443 -11.16481 -11.08435 -10.77239 -10.47189 -9.79752 -9.51366 -9.23335 -9.18542 -9.00333 -8.74952 -8.28068 -6.99264 -6.48733 -4.05905 1.20856 2.11502 2.15405 2.30298 3.10249 3.12935 3.17632 3.19811 3.39174 3.94552 4.07230 4.26743 4.49798 4.52887 4.67872 4.85565 4.93286 5.01957 5.05169 5.21130 5.21405 5.24471 5.44738 5.59956 5.62113 5.63912 5.72124 5.81984 6.03554 6.07035 6.15126 6.20917 6.61875 6.63120 6.69165 6.81375 6.90841 6.93467 6.98844 7.22661 7.35593 7.37029 7.66314 7.68690 7.95932 8.06939 8.96789 9.65195 10.68849 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.027295 B = 0.002199 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.569987 B =12730.538989 C =13427.949832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.586 5.586 3 C 0.113 3.887 4 C -0.135 4.135 5 C 0.064 3.936 6 N -0.853 5.853 7 C 0.510 3.490 8 O -0.525 6.525 9 C 0.496 3.504 10 O -0.502 6.502 11 N -0.623 5.623 12 C 0.026 3.974 13 C -0.064 4.064 14 C -0.219 4.219 15 C 0.148 3.852 16 O -0.173 6.173 17 C -0.391 4.391 18 H 0.093 0.907 19 C 0.040 3.960 20 N -0.860 5.860 21 Si 0.942 3.058 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.176 4.176 26 C -0.088 4.088 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.114 0.886 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.030 0.970 36 H 0.342 0.658 37 H 0.342 0.658 38 H 0.414 0.586 39 H 0.125 0.875 40 H 0.132 0.868 41 H 0.271 0.729 42 H 0.124 0.876 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.090 23.581 -1.798 25.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.320 5.320 3 C -0.010 4.010 4 C -0.174 4.174 5 C -0.067 4.067 6 N -0.383 5.383 7 C 0.292 3.708 8 O -0.401 6.401 9 C 0.278 3.722 10 O -0.379 6.379 11 N -0.267 5.267 12 C -0.066 4.066 13 C -0.084 4.084 14 C -0.239 4.239 15 C 0.094 3.906 16 O -0.076 6.076 17 C -0.467 4.467 18 H 0.111 0.889 19 C -0.165 4.165 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.191 1.191 25 C -0.196 4.196 26 C -0.108 4.108 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.132 0.868 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.250 0.750 39 H 0.143 0.857 40 H 0.150 0.850 41 H 0.081 0.919 42 H 0.142 0.858 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.042 23.148 -1.948 24.583 hybrid contribution 0.572 0.095 0.582 0.821 sum 8.614 23.243 -1.366 24.826 Atomic orbital electron populations 1.22535 0.77239 1.04697 1.03858 1.47682 1.08463 1.04967 1.70843 1.21552 0.98088 0.84177 0.97147 1.21944 1.01775 0.96773 0.96925 1.21689 0.98542 0.96721 0.89771 1.58683 1.57235 1.08496 1.13838 1.20176 0.87426 0.85283 0.77895 1.90739 1.13339 1.87348 1.48707 1.19974 0.87823 0.85098 0.79317 1.90663 1.13466 1.86324 1.47425 1.42905 1.10702 1.04198 1.68929 1.17249 0.96253 0.84129 1.08966 1.20769 0.93195 0.97957 0.96478 1.21079 1.02689 0.91944 1.08164 1.19435 0.91872 0.86513 0.92817 1.83965 1.27203 1.25125 1.71342 1.21355 0.87665 0.97327 1.40392 0.88923 1.25307 0.99841 0.94331 0.97031 1.70039 1.37134 0.99506 1.42783 0.85697 0.80409 0.78213 0.79058 1.19808 1.20246 1.19131 1.20000 0.95044 0.97830 1.06698 1.20354 0.99613 0.91036 0.99764 0.92105 0.91451 0.86769 0.89793 0.89544 0.91497 0.90650 0.90841 0.95220 0.84530 0.84553 0.75013 0.85730 0.85023 0.91945 0.85833 0.86446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.54 9.58 59.84 0.57 1.12 16 2 N -0.59 -6.06 2.87 -182.14 -0.52 -6.58 16 3 C 0.11 0.89 5.38 -4.04 -0.02 0.87 16 4 C -0.14 -1.03 5.80 -26.73 -0.15 -1.18 16 5 C 0.06 0.40 6.79 -3.82 -0.03 0.37 16 6 N -0.85 -5.29 9.62 -10.37 -0.10 -5.39 16 7 C 0.51 6.56 7.74 -11.65 -0.09 6.47 16 8 O -0.52 -7.44 16.06 5.49 0.09 -7.35 16 9 C 0.50 7.21 7.54 -11.65 -0.09 7.12 16 10 O -0.50 -8.08 10.56 5.46 0.06 -8.02 16 11 N -0.62 -9.08 5.34 -10.27 -0.05 -9.14 16 12 C 0.03 0.46 6.35 -83.70 -0.53 -0.07 16 13 C -0.06 -1.24 8.66 -39.40 -0.34 -1.58 16 14 C -0.22 -4.77 9.16 -39.42 -0.36 -5.14 16 15 C 0.15 3.51 6.65 -39.07 -0.26 3.25 16 16 O -0.17 -4.86 9.75 0.11 0.00 -4.86 16 17 C -0.39 -10.78 9.48 30.89 0.29 -10.49 16 18 H 0.09 2.37 5.20 -52.49 -0.27 2.09 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -24.88 13.67 55.48 0.76 -24.12 16 21 Si 0.94 20.33 29.55 -169.99 -5.02 15.30 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 23 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 24 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 25 C -0.18 -3.58 9.98 -39.42 -0.39 -3.98 16 26 C -0.09 -1.51 9.94 -39.40 -0.39 -1.90 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.46 8.02 -51.93 -0.42 0.05 16 29 H 0.11 1.31 5.30 -51.98 -0.28 1.03 16 30 H 0.08 0.48 8.07 -51.93 -0.42 0.06 16 31 H 0.09 0.74 7.41 -51.93 -0.38 0.36 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.03 0.18 8.14 -51.93 -0.42 -0.25 16 36 H 0.34 1.53 9.08 -39.29 -0.36 1.17 16 37 H 0.34 1.96 8.99 -39.29 -0.35 1.61 16 38 H 0.41 5.11 8.28 -40.82 -0.34 4.78 16 39 H 0.12 2.30 6.14 -52.48 -0.32 1.98 16 40 H 0.13 2.87 5.63 -52.49 -0.30 2.58 16 41 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 43 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 364.56 15.07 5.49 5.49 Total: -1.00 -32.10 364.56 -6.72 -38.82 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -5.53 Total: 10.01 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -1.89 Total: -4.17 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: 0.08 Total: -45.23 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: 0.15 Total: -20.23 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.10 -6.72 -38.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333517678.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.989 kcal (2) G-P(sol) polarization free energy of solvation -32.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds